HEADER LIGASE 13-MAY-17 5XMC TITLE CRYSTAL STRUCTURE OF THE AUTO-INHIBITED NEDD4 FAMILY E3 LIGASE ITCH COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE ITCHY; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: NEDD4 FAMILY E3 LIGASE ITCH, UNP RESIDUES 143-864; COMPND 5 SYNONYM: HECT-TYPE E3 UBIQUITIN TRANSFERASE ITCHY HOMOLOG; COMPND 6 EC: 2.3.2.26; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: ITCH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS AUTO-INHIBITED ITCH, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.SHAN,W.WEN REVDAT 3 22-NOV-23 5XMC 1 REMARK REVDAT 2 13-SEP-17 5XMC 1 JRNL REVDAT 1 02-AUG-17 5XMC 0 JRNL AUTH K.ZHU,Z.SHAN,X.CHEN,Y.CAI,L.CUI,W.YAO,Z.WANG,P.SHI,C.TIAN, JRNL AUTH 2 J.LOU,Y.XIE,W.WEN JRNL TITL ALLOSTERIC AUTO-INHIBITION AND ACTIVATION OF THE NEDD4 JRNL TITL 2 FAMILY E3 LIGASE ITCH JRNL REF EMBO REP. V. 18 1618 2017 JRNL REFN ESSN 1469-3178 JRNL PMID 28747490 JRNL DOI 10.15252/EMBR.201744454 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 21563 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1098 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.6009 - 5.1981 0.99 2760 148 0.2292 0.2688 REMARK 3 2 5.1981 - 4.1266 0.99 2657 138 0.1775 0.2391 REMARK 3 3 4.1266 - 3.6052 1.00 2612 158 0.1921 0.2299 REMARK 3 4 3.6052 - 3.2757 1.00 2636 136 0.2059 0.2519 REMARK 3 5 3.2757 - 3.0409 1.00 2611 132 0.2336 0.2954 REMARK 3 6 3.0409 - 2.8617 1.00 2588 136 0.2342 0.2613 REMARK 3 7 2.8617 - 2.7184 0.97 2511 145 0.2475 0.3175 REMARK 3 8 2.7184 - 2.6001 0.81 2090 105 0.2629 0.3396 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.950 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3401 REMARK 3 ANGLE : 1.059 4622 REMARK 3 CHIRALITY : 0.077 476 REMARK 3 PLANARITY : 0.005 602 REMARK 3 DIHEDRAL : 16.285 1200 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 287 THROUGH 503 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.2714 -10.0217 -44.2425 REMARK 3 T TENSOR REMARK 3 T11: 0.2827 T22: 0.2528 REMARK 3 T33: 0.2444 T12: -0.0398 REMARK 3 T13: 0.0712 T23: 0.0625 REMARK 3 L TENSOR REMARK 3 L11: 0.8671 L22: 1.1638 REMARK 3 L33: 2.2490 L12: -0.9241 REMARK 3 L13: -0.6562 L23: 1.2338 REMARK 3 S TENSOR REMARK 3 S11: 0.0433 S12: 0.1261 S13: 0.0820 REMARK 3 S21: -0.0421 S22: -0.1072 S23: -0.0886 REMARK 3 S31: 0.0830 S32: -0.0152 S33: 0.0714 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 504 THROUGH 635 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.2292 -1.5285 -35.5687 REMARK 3 T TENSOR REMARK 3 T11: 0.2324 T22: 0.2282 REMARK 3 T33: 0.1462 T12: -0.0190 REMARK 3 T13: 0.0137 T23: -0.0298 REMARK 3 L TENSOR REMARK 3 L11: 2.5239 L22: 4.4063 REMARK 3 L33: 4.2110 L12: -0.3910 REMARK 3 L13: -0.6678 L23: 0.9056 REMARK 3 S TENSOR REMARK 3 S11: -0.0225 S12: 0.2018 S13: -0.0720 REMARK 3 S21: -0.3412 S22: -0.0593 S23: 0.0110 REMARK 3 S31: 0.1690 S32: -0.3229 S33: 0.0408 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 636 THROUGH 725 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.5130 3.6310 -31.3617 REMARK 3 T TENSOR REMARK 3 T11: 0.2894 T22: 0.4735 REMARK 3 T33: 0.5758 T12: -0.0085 REMARK 3 T13: 0.1698 T23: 0.0563 REMARK 3 L TENSOR REMARK 3 L11: 2.3388 L22: 1.1648 REMARK 3 L33: 2.3195 L12: -0.8184 REMARK 3 L13: 1.0257 L23: 0.4616 REMARK 3 S TENSOR REMARK 3 S11: -0.0544 S12: 0.0297 S13: -0.0343 REMARK 3 S21: -0.3124 S22: -0.0045 S23: -0.7895 REMARK 3 S31: -0.1083 S32: 0.8120 S33: -0.3951 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 726 THROUGH 859 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.3573 -6.2988 -10.9644 REMARK 3 T TENSOR REMARK 3 T11: 0.7564 T22: 0.6114 REMARK 3 T33: 0.3316 T12: 0.2918 REMARK 3 T13: -0.1767 T23: -0.0672 REMARK 3 L TENSOR REMARK 3 L11: 1.7178 L22: 1.1161 REMARK 3 L33: 1.8024 L12: -0.5192 REMARK 3 L13: 0.4653 L23: 0.3393 REMARK 3 S TENSOR REMARK 3 S11: -0.0517 S12: -0.5232 S13: -0.1625 REMARK 3 S21: 0.6395 S22: 0.3549 S23: -0.4355 REMARK 3 S31: 0.9301 S32: 0.6142 S33: -0.0951 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5XMC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1300003767. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.975 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22580 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.49800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3TUG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM CITRIC ACID, 50MM BIS-TRIS REMARK 280 PROPONE, PH 5.5, 16% PEG 3350, EVAPORATION, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.79300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.23750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.54200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.23750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.79300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.54200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 143 REMARK 465 VAL A 144 REMARK 465 GLU A 145 REMARK 465 ALA A 146 REMARK 465 GLU A 147 REMARK 465 VAL A 148 REMARK 465 VAL A 149 REMARK 465 THR A 150 REMARK 465 ASN A 151 REMARK 465 GLY A 152 REMARK 465 GLU A 153 REMARK 465 THR A 154 REMARK 465 SER A 155 REMARK 465 CYS A 156 REMARK 465 SER A 157 REMARK 465 GLU A 158 REMARK 465 SER A 159 REMARK 465 THR A 160 REMARK 465 THR A 161 REMARK 465 GLN A 162 REMARK 465 ASN A 163 REMARK 465 ASP A 164 REMARK 465 ASP A 165 REMARK 465 GLY A 166 REMARK 465 CYS A 167 REMARK 465 ARG A 168 REMARK 465 THR A 169 REMARK 465 ARG A 170 REMARK 465 ASP A 171 REMARK 465 ASP A 172 REMARK 465 THR A 173 REMARK 465 ARG A 174 REMARK 465 VAL A 175 REMARK 465 SER A 176 REMARK 465 THR A 177 REMARK 465 ASN A 178 REMARK 465 GLY A 179 REMARK 465 SER A 180 REMARK 465 GLU A 181 REMARK 465 ASP A 182 REMARK 465 PRO A 183 REMARK 465 GLU A 184 REMARK 465 VAL A 185 REMARK 465 ALA A 186 REMARK 465 ALA A 187 REMARK 465 SER A 188 REMARK 465 GLY A 189 REMARK 465 GLU A 190 REMARK 465 ASN A 191 REMARK 465 LYS A 192 REMARK 465 ARG A 193 REMARK 465 ALA A 194 REMARK 465 ASN A 195 REMARK 465 GLY A 196 REMARK 465 ASN A 197 REMARK 465 ASN A 198 REMARK 465 SER A 199 REMARK 465 PRO A 200 REMARK 465 SER A 201 REMARK 465 LEU A 202 REMARK 465 SER A 203 REMARK 465 ASN A 204 REMARK 465 GLY A 205 REMARK 465 GLY A 206 REMARK 465 PHE A 207 REMARK 465 LYS A 208 REMARK 465 PRO A 209 REMARK 465 SER A 210 REMARK 465 ARG A 211 REMARK 465 PRO A 212 REMARK 465 PRO A 213 REMARK 465 ARG A 214 REMARK 465 PRO A 215 REMARK 465 SER A 216 REMARK 465 ARG A 217 REMARK 465 PRO A 218 REMARK 465 PRO A 219 REMARK 465 PRO A 220 REMARK 465 PRO A 221 REMARK 465 THR A 222 REMARK 465 PRO A 223 REMARK 465 ARG A 224 REMARK 465 ARG A 225 REMARK 465 PRO A 226 REMARK 465 ALA A 227 REMARK 465 SER A 228 REMARK 465 VAL A 229 REMARK 465 ASN A 230 REMARK 465 GLY A 231 REMARK 465 SER A 232 REMARK 465 PRO A 233 REMARK 465 SER A 234 REMARK 465 THR A 235 REMARK 465 ASN A 236 REMARK 465 SER A 237 REMARK 465 ASP A 238 REMARK 465 SER A 239 REMARK 465 ASP A 240 REMARK 465 GLY A 241 REMARK 465 SER A 242 REMARK 465 SER A 243 REMARK 465 THR A 244 REMARK 465 GLY A 245 REMARK 465 SER A 246 REMARK 465 LEU A 247 REMARK 465 PRO A 248 REMARK 465 PRO A 249 REMARK 465 THR A 250 REMARK 465 ASN A 251 REMARK 465 THR A 252 REMARK 465 ASN A 253 REMARK 465 VAL A 254 REMARK 465 ASN A 255 REMARK 465 THR A 256 REMARK 465 SER A 257 REMARK 465 THR A 258 REMARK 465 SER A 259 REMARK 465 GLU A 260 REMARK 465 GLY A 261 REMARK 465 ALA A 262 REMARK 465 THR A 263 REMARK 465 SER A 264 REMARK 465 GLY A 265 REMARK 465 LEU A 266 REMARK 465 ILE A 267 REMARK 465 ILE A 268 REMARK 465 PRO A 269 REMARK 465 LEU A 270 REMARK 465 THR A 271 REMARK 465 ILE A 272 REMARK 465 SER A 273 REMARK 465 GLY A 274 REMARK 465 GLY A 275 REMARK 465 SER A 276 REMARK 465 GLY A 277 REMARK 465 PRO A 278 REMARK 465 ARG A 279 REMARK 465 PRO A 280 REMARK 465 LEU A 281 REMARK 465 ASN A 282 REMARK 465 THR A 283 REMARK 465 VAL A 284 REMARK 465 SER A 285 REMARK 465 GLN A 286 REMARK 465 GLY A 382 REMARK 465 ASN A 383 REMARK 465 GLN A 384 REMARK 465 ASP A 385 REMARK 465 LEU A 386 REMARK 465 PHE A 387 REMARK 465 ALA A 388 REMARK 465 THR A 389 REMARK 465 SER A 390 REMARK 465 GLN A 391 REMARK 465 ASN A 392 REMARK 465 LYS A 393 REMARK 465 GLU A 394 REMARK 465 PHE A 395 REMARK 465 ASP A 396 REMARK 465 PRO A 397 REMARK 465 LEU A 398 REMARK 465 GLY A 399 REMARK 465 PRO A 400 REMARK 465 LEU A 401 REMARK 465 PRO A 402 REMARK 465 PRO A 403 REMARK 465 GLY A 404 REMARK 465 TRP A 405 REMARK 465 GLU A 406 REMARK 465 LYS A 407 REMARK 465 ARG A 408 REMARK 465 THR A 409 REMARK 465 ASP A 410 REMARK 465 SER A 411 REMARK 465 ASN A 412 REMARK 465 GLY A 413 REMARK 465 ARG A 414 REMARK 465 VAL A 415 REMARK 465 TYR A 416 REMARK 465 PHE A 417 REMARK 465 VAL A 418 REMARK 465 ASN A 419 REMARK 465 HIS A 420 REMARK 465 ASN A 421 REMARK 465 THR A 422 REMARK 465 ARG A 423 REMARK 465 ILE A 424 REMARK 465 THR A 425 REMARK 465 GLN A 426 REMARK 465 TRP A 427 REMARK 465 GLU A 428 REMARK 465 ASP A 429 REMARK 465 PRO A 430 REMARK 465 ARG A 431 REMARK 465 SER A 432 REMARK 465 GLN A 433 REMARK 465 GLY A 434 REMARK 465 GLN A 435 REMARK 465 LEU A 436 REMARK 465 ASN A 437 REMARK 465 GLU A 438 REMARK 465 LYS A 439 REMARK 465 PRO A 440 REMARK 465 LEU A 441 REMARK 465 PRO A 442 REMARK 465 GLU A 443 REMARK 465 GLY A 444 REMARK 465 TRP A 445 REMARK 465 GLU A 446 REMARK 465 MET A 447 REMARK 465 ARG A 448 REMARK 465 PHE A 449 REMARK 465 THR A 450 REMARK 465 VAL A 451 REMARK 465 ASP A 452 REMARK 465 GLY A 453 REMARK 465 ILE A 454 REMARK 465 PRO A 455 REMARK 465 TYR A 456 REMARK 465 PHE A 457 REMARK 465 VAL A 458 REMARK 465 ASP A 459 REMARK 465 HIS A 460 REMARK 465 ASN A 461 REMARK 465 ARG A 462 REMARK 465 ARG A 463 REMARK 465 ALA A 464 REMARK 465 THR A 465 REMARK 465 THR A 466 REMARK 465 TYR A 467 REMARK 465 ILE A 468 REMARK 465 ASP A 469 REMARK 465 PRO A 470 REMARK 465 ARG A 471 REMARK 465 THR A 472 REMARK 465 GLY A 473 REMARK 465 LYS A 474 REMARK 465 SER A 475 REMARK 465 ALA A 476 REMARK 465 LEU A 477 REMARK 465 ASP A 478 REMARK 465 ASN A 479 REMARK 465 GLY A 480 REMARK 465 PRO A 481 REMARK 465 GLN A 482 REMARK 465 ILE A 483 REMARK 465 GLY A 544 REMARK 465 GLU A 545 REMARK 465 GLU A 546 REMARK 465 GLY A 547 REMARK 465 LEU A 548 REMARK 465 GLY A 577 REMARK 465 LYS A 578 REMARK 465 LYS A 653 REMARK 465 GLU A 654 REMARK 465 ASN A 655 REMARK 465 ASN A 656 REMARK 465 ILE A 657 REMARK 465 GLU A 658 REMARK 465 GLU A 659 REMARK 465 CYS A 660 REMARK 465 GLY A 661 REMARK 465 LEU A 662 REMARK 465 GLU A 663 REMARK 465 MET A 664 REMARK 465 TYR A 665 REMARK 465 PHE A 666 REMARK 465 SER A 667 REMARK 465 VAL A 668 REMARK 465 ASP A 669 REMARK 465 LYS A 670 REMARK 465 GLU A 671 REMARK 465 ILE A 672 REMARK 465 LEU A 673 REMARK 465 GLY A 674 REMARK 465 GLU A 675 REMARK 465 ILE A 676 REMARK 465 LYS A 677 REMARK 465 SER A 678 REMARK 465 HIS A 679 REMARK 465 ASP A 680 REMARK 465 LEU A 681 REMARK 465 LYS A 682 REMARK 465 PRO A 683 REMARK 465 ASN A 684 REMARK 465 GLY A 685 REMARK 465 GLY A 686 REMARK 465 ASN A 687 REMARK 465 ILE A 688 REMARK 465 LEU A 689 REMARK 465 VAL A 690 REMARK 465 THR A 691 REMARK 465 GLU A 692 REMARK 465 GLU A 693 REMARK 465 ASN A 694 REMARK 465 LYS A 695 REMARK 465 GLU A 696 REMARK 465 GLU A 697 REMARK 465 TYR A 698 REMARK 465 ILE A 699 REMARK 465 ARG A 700 REMARK 465 MET A 701 REMARK 465 VAL A 702 REMARK 465 ALA A 703 REMARK 465 GLU A 704 REMARK 465 ARG A 761 REMARK 465 SER A 767 REMARK 465 LYS A 768 REMARK 465 GLY A 860 REMARK 465 PHE A 861 REMARK 465 GLY A 862 REMARK 465 GLN A 863 REMARK 465 GLU A 864 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 297 CG1 CG2 REMARK 470 ARG A 302 NE CZ NH1 NH2 REMARK 470 ARG A 328 CZ NH1 NH2 REMARK 470 ASN A 331 CG OD1 ND2 REMARK 470 MET A 332 CG SD CE REMARK 470 ARG A 343 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 352 CD1 CD2 REMARK 470 GLU A 353 CG CD OE1 OE2 REMARK 470 ARG A 356 CZ NH1 NH2 REMARK 470 GLN A 360 OE1 NE2 REMARK 470 GLN A 373 CG CD OE1 NE2 REMARK 470 VAL A 486 CG1 CG2 REMARK 470 LYS A 490 NZ REMARK 470 GLN A 501 CG CD OE1 NE2 REMARK 470 MET A 505 CE REMARK 470 GLN A 507 CG CD OE1 NE2 REMARK 470 LYS A 510 CG CD CE NZ REMARK 470 LYS A 516 CG CD CE NZ REMARK 470 LEU A 518 CD1 CD2 REMARK 470 ARG A 537 CD NE CZ NH1 NH2 REMARK 470 TRP A 539 CE3 CZ2 CZ3 CH2 REMARK 470 ASP A 549 CG OD1 OD2 REMARK 470 ASP A 579 CG OD1 OD2 REMARK 470 ASN A 580 OD1 ND2 REMARK 470 ILE A 591 CD1 REMARK 470 LYS A 626 NZ REMARK 470 VAL A 633 CG1 CG2 REMARK 470 LEU A 635 CG CD1 CD2 REMARK 470 LYS A 636 CG CD CE NZ REMARK 470 LEU A 638 CD1 CD2 REMARK 470 SER A 640 OG REMARK 470 ILE A 641 CD1 REMARK 470 ASP A 642 CG OD1 OD2 REMARK 470 GLU A 644 CG CD OE1 OE2 REMARK 470 PHE A 645 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN A 647 CG OD1 ND2 REMARK 470 SER A 648 OG REMARK 470 LEU A 649 CG CD1 CD2 REMARK 470 ILE A 650 CG1 CG2 CD1 REMARK 470 TRP A 651 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 651 CZ3 CH2 REMARK 470 VAL A 652 CG1 CG2 REMARK 470 TRP A 705 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 705 CZ3 CH2 REMARK 470 ARG A 706 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 709 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 712 CG CD OE1 OE2 REMARK 470 LEU A 751 CG CD1 CD2 REMARK 470 ASN A 752 CG OD1 ND2 REMARK 470 GLN A 755 OE1 REMARK 470 ARG A 756 NE CZ NH1 NH2 REMARK 470 ILE A 759 CD1 REMARK 470 HIS A 762 CG ND1 CD2 CE1 NE2 REMARK 470 TYR A 763 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 THR A 764 OG1 CG2 REMARK 470 ARG A 765 CD NE CZ NH1 NH2 REMARK 470 THR A 766 OG1 CG2 REMARK 470 ILE A 770 CG1 CG2 CD1 REMARK 470 MET A 771 CE REMARK 470 GLN A 775 CG CD OE1 NE2 REMARK 470 LYS A 778 CG CD CE NZ REMARK 470 GLN A 813 CD OE1 NE2 REMARK 470 LYS A 814 CD CE NZ REMARK 470 LYS A 819 CG CD CE NZ REMARK 470 LYS A 822 CG CD CE NZ REMARK 470 TRP A 825 CE3 CZ2 CZ3 CH2 REMARK 470 ARG A 828 CD NE CZ NH1 NH2 REMARK 470 LYS A 842 CG CD CE NZ REMARK 470 SER A 843 OG REMARK 470 GLU A 845 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 311 62.38 65.29 REMARK 500 LYS A 311 61.48 65.29 REMARK 500 HIS A 340 37.07 -89.12 REMARK 500 PHE A 341 -36.36 -139.59 REMARK 500 ILE A 380 -86.46 -128.91 REMARK 500 ILE A 641 -75.24 -86.96 REMARK 500 ASN A 810 48.84 -146.55 REMARK 500 VAL A 820 138.78 -172.36 REMARK 500 PRO A 840 89.01 -64.61 REMARK 500 REMARK 500 REMARK: NULL DBREF 5XMC A 143 864 UNP Q8C863 ITCH_MOUSE 143 864 SEQRES 1 A 722 GLN VAL GLU ALA GLU VAL VAL THR ASN GLY GLU THR SER SEQRES 2 A 722 CYS SER GLU SER THR THR GLN ASN ASP ASP GLY CYS ARG SEQRES 3 A 722 THR ARG ASP ASP THR ARG VAL SER THR ASN GLY SER GLU SEQRES 4 A 722 ASP PRO GLU VAL ALA ALA SER GLY GLU ASN LYS ARG ALA SEQRES 5 A 722 ASN GLY ASN ASN SER PRO SER LEU SER ASN GLY GLY PHE SEQRES 6 A 722 LYS PRO SER ARG PRO PRO ARG PRO SER ARG PRO PRO PRO SEQRES 7 A 722 PRO THR PRO ARG ARG PRO ALA SER VAL ASN GLY SER PRO SEQRES 8 A 722 SER THR ASN SER ASP SER ASP GLY SER SER THR GLY SER SEQRES 9 A 722 LEU PRO PRO THR ASN THR ASN VAL ASN THR SER THR SER SEQRES 10 A 722 GLU GLY ALA THR SER GLY LEU ILE ILE PRO LEU THR ILE SEQRES 11 A 722 SER GLY GLY SER GLY PRO ARG PRO LEU ASN THR VAL SER SEQRES 12 A 722 GLN ALA PRO LEU PRO PRO GLY TRP GLU GLN ARG VAL ASP SEQRES 13 A 722 GLN HIS GLY ARG VAL TYR TYR VAL ASP HIS VAL GLU LYS SEQRES 14 A 722 ARG THR THR TRP ASP ARG PRO GLU PRO LEU PRO PRO GLY SEQRES 15 A 722 TRP GLU ARG ARG VAL ASP ASN MET GLY ARG ILE TYR TYR SEQRES 16 A 722 VAL ASP HIS PHE THR ARG THR THR THR TRP GLN ARG PRO SEQRES 17 A 722 THR LEU GLU SER VAL ARG ASN TYR GLU GLN TRP GLN LEU SEQRES 18 A 722 GLN ARG SER GLN LEU GLN GLY ALA MET GLN GLN PHE ASN SEQRES 19 A 722 GLN ARG PHE ILE TYR GLY ASN GLN ASP LEU PHE ALA THR SEQRES 20 A 722 SER GLN ASN LYS GLU PHE ASP PRO LEU GLY PRO LEU PRO SEQRES 21 A 722 PRO GLY TRP GLU LYS ARG THR ASP SER ASN GLY ARG VAL SEQRES 22 A 722 TYR PHE VAL ASN HIS ASN THR ARG ILE THR GLN TRP GLU SEQRES 23 A 722 ASP PRO ARG SER GLN GLY GLN LEU ASN GLU LYS PRO LEU SEQRES 24 A 722 PRO GLU GLY TRP GLU MET ARG PHE THR VAL ASP GLY ILE SEQRES 25 A 722 PRO TYR PHE VAL ASP HIS ASN ARG ARG ALA THR THR TYR SEQRES 26 A 722 ILE ASP PRO ARG THR GLY LYS SER ALA LEU ASP ASN GLY SEQRES 27 A 722 PRO GLN ILE ALA TYR VAL ARG ASP PHE LYS ALA LYS VAL SEQRES 28 A 722 GLN TYR PHE ARG PHE TRP CYS GLN GLN LEU ALA MET PRO SEQRES 29 A 722 GLN HIS ILE LYS ILE THR VAL THR ARG LYS THR LEU PHE SEQRES 30 A 722 GLU ASP SER PHE GLN GLN ILE MET SER PHE SER PRO GLN SEQRES 31 A 722 ASP LEU ARG ARG ARG LEU TRP VAL ILE PHE PRO GLY GLU SEQRES 32 A 722 GLU GLY LEU ASP TYR GLY GLY VAL ALA ARG GLU TRP PHE SEQRES 33 A 722 PHE LEU LEU SER HIS GLU VAL LEU ASN PRO MET TYR CYS SEQRES 34 A 722 LEU PHE GLU TYR ALA GLY LYS ASP ASN TYR CYS LEU GLN SEQRES 35 A 722 ILE ASN PRO ALA SER TYR ILE ASN PRO ASP HIS LEU LYS SEQRES 36 A 722 TYR PHE ARG PHE ILE GLY ARG PHE ILE ALA MET ALA LEU SEQRES 37 A 722 PHE HIS GLY LYS PHE ILE ASP THR GLY PHE SER LEU PRO SEQRES 38 A 722 PHE TYR LYS ARG ILE LEU ASN LYS PRO VAL GLY LEU LYS SEQRES 39 A 722 ASP LEU GLU SER ILE ASP PRO GLU PHE TYR ASN SER LEU SEQRES 40 A 722 ILE TRP VAL LYS GLU ASN ASN ILE GLU GLU CYS GLY LEU SEQRES 41 A 722 GLU MET TYR PHE SER VAL ASP LYS GLU ILE LEU GLY GLU SEQRES 42 A 722 ILE LYS SER HIS ASP LEU LYS PRO ASN GLY GLY ASN ILE SEQRES 43 A 722 LEU VAL THR GLU GLU ASN LYS GLU GLU TYR ILE ARG MET SEQRES 44 A 722 VAL ALA GLU TRP ARG LEU SER ARG GLY VAL GLU GLU GLN SEQRES 45 A 722 THR GLN ALA PHE PHE GLU GLY PHE ASN GLU ILE LEU PRO SEQRES 46 A 722 GLN GLN TYR LEU GLN TYR PHE ASP ALA LYS GLU LEU GLU SEQRES 47 A 722 VAL LEU LEU CYS GLY MET GLN GLU ILE ASP LEU ASN ASP SEQRES 48 A 722 TRP GLN ARG HIS ALA ILE TYR ARG HIS TYR THR ARG THR SEQRES 49 A 722 SER LYS GLN ILE MET TRP PHE TRP GLN PHE VAL LYS GLU SEQRES 50 A 722 ILE ASP ASN GLU LYS ARG MET ARG LEU LEU GLN PHE VAL SEQRES 51 A 722 THR GLY THR CYS ARG LEU PRO VAL GLY GLY PHE ALA ASP SEQRES 52 A 722 LEU MET GLY SER ASN GLY PRO GLN LYS PHE CYS ILE GLU SEQRES 53 A 722 LYS VAL GLY LYS GLU ASN TRP LEU PRO ARG SER HIS THR SEQRES 54 A 722 CYS PHE ASN ARG LEU ASP LEU PRO PRO TYR LYS SER TYR SEQRES 55 A 722 GLU GLN LEU LYS GLU LYS LEU LEU PHE ALA ILE GLU GLU SEQRES 56 A 722 THR GLU GLY PHE GLY GLN GLU FORMUL 2 HOH *46(H2 O) HELIX 1 AA1 THR A 351 ALA A 371 1 21 HELIX 2 AA2 ALA A 371 ASN A 376 1 6 HELIX 3 AA3 ASP A 488 ALA A 504 1 17 HELIX 4 AA4 THR A 517 PHE A 529 1 13 HELIX 5 AA5 SER A 530 ARG A 535 1 6 HELIX 6 AA6 TYR A 550 VAL A 565 1 16 HELIX 7 AA7 LEU A 566 CYS A 571 5 6 HELIX 8 AA8 PRO A 587 ASN A 592 5 6 HELIX 9 AA9 ASP A 594 GLY A 613 1 20 HELIX 10 AB1 SER A 621 LEU A 629 1 9 HELIX 11 AB2 GLY A 634 ASP A 642 1 9 HELIX 12 AB3 ASP A 642 ILE A 650 1 9 HELIX 13 AB4 VAL A 711 LEU A 726 1 16 HELIX 14 AB5 PRO A 727 GLN A 732 5 6 HELIX 15 AB6 ASP A 735 GLY A 745 1 11 HELIX 16 AB7 ASP A 750 HIS A 757 1 8 HELIX 17 AB8 ILE A 770 ILE A 780 1 11 HELIX 18 AB9 ASP A 781 GLY A 794 1 14 HELIX 19 AC1 GLY A 802 ASP A 805 5 4 HELIX 20 AC2 THR A 831 PHE A 833 5 3 HELIX 21 AC3 SER A 843 GLU A 857 1 15 SHEET 1 AA1 3 TRP A 293 VAL A 297 0 SHEET 2 AA1 3 VAL A 303 ASP A 307 -1 O TYR A 304 N ARG A 296 SHEET 3 AA1 3 ARG A 312 THR A 314 -1 O ARG A 312 N ASP A 307 SHEET 1 AA2 3 TRP A 325 VAL A 329 0 SHEET 2 AA2 3 ILE A 335 ASP A 339 -1 O TYR A 336 N ARG A 328 SHEET 3 AA2 3 THR A 345 THR A 346 -1 O THR A 346 N TYR A 337 SHEET 1 AA3 2 MET A 505 THR A 512 0 SHEET 2 AA3 2 ARG A 536 ILE A 541 1 O ARG A 537 N ILE A 509 SHEET 1 AA4 2 PHE A 573 TYR A 575 0 SHEET 2 AA4 2 LEU A 583 ILE A 585 -1 O GLN A 584 N GLU A 574 SHEET 1 AA5 4 ALA A 758 ILE A 759 0 SHEET 2 AA5 4 PHE A 815 LYS A 819 1 O PHE A 815 N ILE A 759 SHEET 3 AA5 4 ARG A 835 LEU A 838 1 O LEU A 836 N CYS A 816 SHEET 4 AA5 4 ARG A 828 HIS A 830 -1 N ARG A 828 O ASP A 837 SHEET 1 AA6 2 MET A 807 GLY A 808 0 SHEET 2 AA6 2 GLY A 811 PRO A 812 -1 O GLY A 811 N GLY A 808 CISPEP 1 GLN A 507 HIS A 508 0 -1.05 CRYST1 69.586 77.084 130.475 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014371 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012973 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007664 0.00000