HEADER APOPTOSIS 15-MAY-17 5XME TITLE SOLUTION STRUCTURE OF C-TERMINAL DOMAIN OF TRADD COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUMOR NECROSIS FACTOR RECEPTOR TYPE 1-ASSOCIATED DEATH COMPND 3 DOMAIN PROTEIN; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: UNP RESIDUES 199-312; COMPND 6 SYNONYM: TNFR1-ASSOCIATED DEATH DOMAIN PROTEIN,TNFRSF1A-ASSOCIATED COMPND 7 VIA DEATH DOMAIN; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TRADD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRADD, DEATH DOMAIN, APOPTOSIS EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR Z.LIN,N.ZHANG REVDAT 1 06-SEP-17 5XME 0 JRNL AUTH N.ZHANG,W.YUAN,J.S.FAN,Z.LIN JRNL TITL STRUCTURE OF THE C-TERMINAL DOMAIN OF TRADD REVEALS A NOVEL JRNL TITL 2 FOLD IN THE DEATH DOMAIN SUPERFAMILY. JRNL REF SCI REP V. 7 7073 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 28765645 JRNL DOI 10.1038/S41598-017-07348-9 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM, III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5XME COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1300002564. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 301 REMARK 210 PH : 5.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.6 MM U-99% 13C; U-99% 15N;U REMARK 210 -98% 2H TRADD DD, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 3D HNCA; 3D HN(CO)CA; REMARK 210 3D HCCH-TOCSY; 4D 13C, 15N- REMARK 210 EDITED NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, CYANA, NMRVIEW REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 MET A 186 REMARK 465 HIS A 187 REMARK 465 HIS A 188 REMARK 465 HIS A 189 REMARK 465 HIS A 190 REMARK 465 HIS A 191 REMARK 465 HIS A 192 REMARK 465 SER A 193 REMARK 465 SER A 194 REMARK 465 GLY A 195 REMARK 465 ARG A 196 REMARK 465 GLY A 197 REMARK 465 SER A 198 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 247 39.53 -68.06 REMARK 500 1 GLU A 276 -51.33 -132.77 REMARK 500 1 GLU A 293 35.54 71.19 REMARK 500 1 LEU A 294 55.37 -91.50 REMARK 500 1 PRO A 307 16.92 -69.16 REMARK 500 1 ASN A 308 -63.02 -145.88 REMARK 500 2 PHE A 222 -71.03 -57.51 REMARK 500 2 PRO A 247 29.84 -68.07 REMARK 500 2 GLU A 276 -51.56 -134.74 REMARK 500 2 LEU A 294 58.78 -98.80 REMARK 500 2 PRO A 307 11.76 -68.60 REMARK 500 2 ASN A 308 -55.87 -165.40 REMARK 500 3 GLN A 200 104.76 -59.55 REMARK 500 3 PHE A 222 -72.30 -56.57 REMARK 500 3 PRO A 247 32.06 -67.03 REMARK 500 3 GLU A 276 -51.33 -132.30 REMARK 500 3 LEU A 294 57.39 -97.20 REMARK 500 4 PHE A 222 -71.24 -56.94 REMARK 500 4 PRO A 247 47.45 -69.09 REMARK 500 4 GLU A 276 -50.42 -132.36 REMARK 500 4 LEU A 294 56.25 -96.36 REMARK 500 5 PHE A 222 -70.83 -57.60 REMARK 500 5 PRO A 247 32.74 -69.54 REMARK 500 5 GLU A 276 -51.52 -133.25 REMARK 500 5 ALA A 280 102.80 -52.63 REMARK 500 5 GLU A 293 36.21 70.47 REMARK 500 5 LEU A 294 57.22 -96.06 REMARK 500 5 PRO A 307 12.31 -69.40 REMARK 500 5 ASN A 308 81.09 -166.88 REMARK 500 6 PRO A 247 30.96 -66.93 REMARK 500 6 GLU A 276 -51.50 -134.52 REMARK 500 6 ALA A 280 99.53 -55.19 REMARK 500 6 LEU A 294 57.08 -97.03 REMARK 500 6 PRO A 307 21.63 -70.73 REMARK 500 7 GLN A 200 104.37 -59.82 REMARK 500 7 PHE A 222 -71.41 -55.69 REMARK 500 7 PRO A 247 32.59 -67.35 REMARK 500 7 GLU A 276 -50.33 -133.24 REMARK 500 7 LEU A 294 54.73 -98.54 REMARK 500 7 PRO A 307 20.29 -69.74 REMARK 500 7 LEU A 311 -173.01 59.29 REMARK 500 8 PHE A 222 -72.64 -56.34 REMARK 500 8 PRO A 247 32.79 -68.22 REMARK 500 8 GLU A 276 -51.85 -134.07 REMARK 500 8 LEU A 294 54.53 -93.70 REMARK 500 8 PRO A 307 18.07 -68.13 REMARK 500 9 PHE A 222 -70.56 -55.52 REMARK 500 9 PRO A 247 29.73 -67.29 REMARK 500 9 GLU A 276 -51.55 -131.67 REMARK 500 9 ALA A 280 103.63 -52.42 REMARK 500 REMARK 500 THIS ENTRY HAS 60 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36084 RELATED DB: BMRB DBREF 5XME A 199 312 UNP Q15628 TRADD_HUMAN 199 312 SEQADV 5XME MET A 186 UNP Q15628 EXPRESSION TAG SEQADV 5XME HIS A 187 UNP Q15628 EXPRESSION TAG SEQADV 5XME HIS A 188 UNP Q15628 EXPRESSION TAG SEQADV 5XME HIS A 189 UNP Q15628 EXPRESSION TAG SEQADV 5XME HIS A 190 UNP Q15628 EXPRESSION TAG SEQADV 5XME HIS A 191 UNP Q15628 EXPRESSION TAG SEQADV 5XME HIS A 192 UNP Q15628 EXPRESSION TAG SEQADV 5XME SER A 193 UNP Q15628 EXPRESSION TAG SEQADV 5XME SER A 194 UNP Q15628 EXPRESSION TAG SEQADV 5XME GLY A 195 UNP Q15628 EXPRESSION TAG SEQADV 5XME ARG A 196 UNP Q15628 EXPRESSION TAG SEQADV 5XME GLY A 197 UNP Q15628 EXPRESSION TAG SEQADV 5XME SER A 198 UNP Q15628 EXPRESSION TAG SEQRES 1 A 127 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLY SER SEQRES 2 A 127 ALA GLN THR PHE LEU PHE GLN GLY GLN PRO VAL VAL ASN SEQRES 3 A 127 ARG PRO LEU SER LEU LYS ASP GLN GLN THR PHE ALA ARG SEQRES 4 A 127 SER VAL GLY LEU LYS TRP ARG LYS VAL GLY ARG SER LEU SEQRES 5 A 127 GLN ARG GLY CYS ARG ALA LEU ARG ASP PRO ALA LEU ASP SEQRES 6 A 127 SER LEU ALA TYR GLU TYR GLU ARG GLU GLY LEU TYR GLU SEQRES 7 A 127 GLN ALA PHE GLN LEU LEU ARG ARG PHE VAL GLN ALA GLU SEQRES 8 A 127 GLY ARG ARG ALA THR LEU GLN ARG LEU VAL GLU ALA LEU SEQRES 9 A 127 GLU GLU ASN GLU LEU THR SER LEU ALA GLU ASP LEU LEU SEQRES 10 A 127 GLY LEU THR ASP PRO ASN GLY GLY LEU ALA HELIX 1 AA1 SER A 215 GLY A 227 1 13 HELIX 2 AA2 LYS A 229 CYS A 241 1 13 HELIX 3 AA3 ARG A 242 ARG A 245 5 4 HELIX 4 AA4 PRO A 247 TYR A 256 1 10 HELIX 5 AA5 GLY A 260 GLU A 276 1 17 HELIX 6 AA6 THR A 281 GLU A 293 1 13 HELIX 7 AA7 LEU A 294 LEU A 302 1 9 SHEET 1 AA1 2 THR A 201 PHE A 204 0 SHEET 2 AA1 2 GLN A 207 VAL A 210 -1 O GLN A 207 N PHE A 204 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1