HEADER LYASE 24-MAY-17 5XNR TITLE TRUNCATED ALYQ WITH CBM32 AND ALGINATE LYASE DOMAINS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALYQ; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PERSICOBACTER SP. CCB-QB2; SOURCE 3 ORGANISM_TAXID: 1561025; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALGINATE LYASE, CBM32, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR A.H.TEH,P.F.SIM REVDAT 2 22-NOV-23 5XNR 1 REMARK REVDAT 1 13-JUN-18 5XNR 0 JRNL AUTH P.F.SIM,G.FURUSAWA,A.H.TEH JRNL TITL FUNCTIONAL AND STRUCTURAL STUDIES OF A MULTIDOMAIN ALGINATE JRNL TITL 2 LYASE FROM PERSICOBACTER SP. CCB-QB2. JRNL REF SCI REP V. 7 13656 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 29057942 JRNL DOI 10.1038/S41598-017-13288-1 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0222 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 21500 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1144 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1567 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.45 REMARK 3 BIN R VALUE (WORKING SET) : 0.3220 REMARK 3 BIN FREE R VALUE SET COUNT : 82 REMARK 3 BIN FREE R VALUE : 0.4380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2991 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 40 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.40000 REMARK 3 B22 (A**2) : 2.40000 REMARK 3 B33 (A**2) : -4.79000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.305 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.244 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.212 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.508 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3067 ; 0.009 ; 0.015 REMARK 3 BOND LENGTHS OTHERS (A): 2561 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4168 ; 1.337 ; 1.727 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5998 ; 0.468 ; 1.720 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 383 ; 7.401 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 120 ;35.054 ;21.750 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 405 ;16.306 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;20.039 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 403 ; 0.057 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3539 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 605 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5XNR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1300003826. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22663 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 37.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.91 REMARK 200 R MERGE FOR SHELL (I) : 0.39600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1UAI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 3350, 0.1M SODIUM ACETATE PH REMARK 280 4.0, 0.2M POTASSIUM PHOSPHATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 89.86650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 37.15850 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 37.15850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 44.93325 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 37.15850 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 37.15850 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 134.79975 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 37.15850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.15850 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 44.93325 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 37.15850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.15850 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 134.79975 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 89.86650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ASN A -6 REMARK 465 GLU A 316 REMARK 465 GLU A 317 REMARK 465 GLY A 318 REMARK 465 ASP A 319 REMARK 465 GLY A 320 REMARK 465 ASN A 321 REMARK 465 HIS A 574 REMARK 465 HIS A 575 REMARK 465 HIS A 576 REMARK 465 HIS A 577 REMARK 465 HIS A 578 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 236 11.06 -142.71 REMARK 500 ASN A 381 72.04 40.48 REMARK 500 PRO A 426 174.81 -55.28 REMARK 500 ALA A 434 -102.50 -105.47 REMARK 500 ILE A 445 -64.42 -99.11 REMARK 500 ASP A 446 -128.75 53.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 375 0.10 SIDE CHAIN REMARK 500 ARG A 398 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 206 O REMARK 620 2 ASP A 209 OD1 68.7 REMARK 620 3 ASN A 211 O 152.5 84.6 REMARK 620 4 THR A 214 O 112.9 142.3 92.0 REMARK 620 5 THR A 214 OG1 88.7 68.5 87.3 73.8 REMARK 620 6 THR A 307 O 93.5 123.5 96.1 94.2 167.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 602 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 351 OD1 REMARK 620 2 ASP A 351 OD2 46.1 REMARK 620 3 THR A 353 O 78.5 91.0 REMARK 620 4 THR A 353 OG1 74.7 119.7 62.4 REMARK 620 5 GLU A 357 OE2 121.7 76.2 97.6 152.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 604 REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE OF THE PROTEIN HAS BEEN DEPOSITED TO NCBI WITH ACCESSION REMARK 999 NUMBER WP_053404615. DBREF 5XNR A -7 578 PDB 5XNR 5XNR -7 578 SEQRES 1 A 398 MET ASN HIS LYS VAL HIS MET GLN TYR ASP ILE VAL ALA SEQRES 2 A 398 VAL THR ALA SER ALA HIS ASP GLY ASN LEU PRO GLU ASN SEQRES 3 A 398 THR ILE ASP GLY ASN LEU SER THR ARG TRP SER ALA ASN SEQRES 4 A 398 GLY SER GLY GLN TYR ILE THR PHE ASP LEU GLY SER ALA SEQRES 5 A 398 LYS THR VAL ASN GLN VAL LYS ALA ALA TRP TYR ASN GLY SEQRES 6 A 398 ASP SER ARG THR SER GLY PHE SER ILE SER LEU GLY SER SEQRES 7 A 398 ASP PRO ALA SER LEU THR GLU VAL TYR SER GLY THR SER SEQRES 8 A 398 SER GLY GLN THR ASN ALA LEU GLU SER TYR SER PHE THR SEQRES 9 A 398 ALA THR THR ALA ARG TYR ILE ARG ILE THR GLY PHE GLY SEQRES 10 A 398 ASN SER SER ASN THR TRP ASN SER ILE THR GLU VAL ALA SEQRES 11 A 398 ILE PHE HIS ALA GLY GLU GLU GLY ASP GLY ASN GLU GLU SEQRES 12 A 398 ALA PRO GLY THR ALA GLN ILE PRO SER ASP LEU MET SER SEQRES 13 A 398 ASN CYS ASN GLN TRP LYS ILE THR TYR PRO ASP GLY SER SEQRES 14 A 398 GLU ASP LYS THR LEU CYS GLY GLU ALA ASN ASN GLU TYR SEQRES 15 A 398 TRP PHE VAL ASN GLU ASP LYS ASN ALA MET VAL PHE ARG SEQRES 16 A 398 ALA PRO ILE ARG SER ASN ASN GLY THR THR PRO ASN SER SEQRES 17 A 398 SER TYR VAL ARG SER GLU LEU ARG GLU ARG LYS GLU ASP SEQRES 18 A 398 GLY SER ALA ASP ILE TYR TRP THR THR THR GLY THR HIS SEQRES 19 A 398 VAL VAL TYR VAL LYS GLN ALA ILE THR GLN LEU PRO ILE SEQRES 20 A 398 VAL LYS ASP HIS LEU VAL ALA THR GLN ILE HIS GLY ASP SEQRES 21 A 398 LYS SER ALA GLY ILE ASP ASP ALA MET VAL MET ARG LEU SEQRES 22 A 398 GLU GLY ASN HIS LEU PHE ALA SER PHE ASN GLY GLY LYS SEQRES 23 A 398 LEU ARG SER ASP LEU THR ILE LYS THR ASN TYR ASN LEU SEQRES 24 A 398 GLY THR VAL HIS GLU VAL ILE PHE GLU VAL ILE ASN GLY SEQRES 25 A 398 LYS HIS TYR LEU TYR TYR SER GLU ASP GLY LYS LEU ALA SEQRES 26 A 398 GLU ALA TYR ALA ASN GLY SER ALA ALA ALA TYR LEU ILE SEQRES 27 A 398 LYS ASP GLY GLY ASN ASP TYR VAL MET ASP LEU ASN TYR SEQRES 28 A 398 ASP GLN SER TYR PHE LYS ILE GLY ASN TYR THR GLN SER SEQRES 29 A 398 ASN SER GLU LYS GLU GLY SER TYR THR GLY ASP PRO ASN SEQRES 30 A 398 ASN TYR GLY GLU VAL VAL VAL TYR ASP TYR PHE VAL SER SEQRES 31 A 398 HIS GLN HIS HIS HIS HIS HIS HIS HET CA A 601 1 HET K A 602 1 HET ACT A 603 4 HET PO4 A 604 5 HETNAM CA CALCIUM ION HETNAM K POTASSIUM ION HETNAM ACT ACETATE ION HETNAM PO4 PHOSPHATE ION FORMUL 2 CA CA 2+ FORMUL 3 K K 1+ FORMUL 4 ACT C2 H3 O2 1- FORMUL 5 PO4 O4 P 3- FORMUL 6 HOH *40(H2 O) HELIX 1 AA1 LEU A 203 ASP A 209 5 7 HELIX 2 AA2 ILE A 330 MET A 335 5 6 HELIX 3 AA3 ASN A 337 ASN A 339 5 3 HELIX 4 AA4 LYS A 503 GLY A 511 1 9 HELIX 5 AA5 ALA A 513 LEU A 517 5 5 HELIX 6 AA6 ASN A 545 GLY A 550 1 6 HELIX 7 AA7 SER A 551 THR A 553 5 3 SHEET 1 AA1 4 MET A -1 TYR A 189 0 SHEET 2 AA1 4 TRP A 303 HIS A 313 -1 O HIS A 313 N MET A -1 SHEET 3 AA1 4 TYR A 224 TRP A 242 -1 N LYS A 239 O ALA A 310 SHEET 4 AA1 4 TRP A 216 ASN A 219 0 SHEET 1 AA2 6 ALA A 193 ALA A 196 0 SHEET 2 AA2 6 TYR A 224 TRP A 242 -1 O ASP A 228 N ALA A 193 SHEET 3 AA2 6 TRP A 303 HIS A 313 -1 O ALA A 310 N LYS A 239 SHEET 4 AA2 6 GLU A 279 ASN A 298 0 SHEET 5 AA2 6 SER A 250 GLY A 257 -1 N GLY A 257 O TYR A 290 SHEET 6 AA2 6 THR A 264 THR A 270 -1 O GLY A 269 N PHE A 252 SHEET 1 AA3 8 GLU A 350 ASP A 351 0 SHEET 2 AA3 8 TRP A 341 THR A 344 -1 N ILE A 343 O ASP A 351 SHEET 3 AA3 8 VAL A 391 GLU A 397 -1 O ARG A 396 N LYS A 342 SHEET 4 AA3 8 TYR A 535 THR A 542 -1 O ILE A 538 N LEU A 395 SHEET 5 AA3 8 HIS A 431 HIS A 438 -1 N VAL A 433 O TYR A 541 SHEET 6 AA3 8 MET A 449 GLU A 454 -1 O MET A 449 N ILE A 437 SHEET 7 AA3 8 HIS A 457 SER A 461 -1 O PHE A 459 N ARG A 452 SHEET 8 AA3 8 LEU A 471 LYS A 474 -1 O ILE A 473 N LEU A 458 SHEET 1 AA4 7 TRP A 363 VAL A 365 0 SHEET 2 AA4 7 MET A 372 PRO A 377 -1 O VAL A 373 N PHE A 364 SHEET 3 AA4 7 TYR A 559 GLN A 572 -1 O VAL A 564 N MET A 372 SHEET 4 AA4 7 THR A 413 GLN A 424 -1 N ALA A 421 O VAL A 563 SHEET 5 AA4 7 VAL A 482 ILE A 490 -1 O HIS A 483 N GLN A 420 SHEET 6 AA4 7 LYS A 493 SER A 499 -1 O TYR A 495 N GLU A 488 SHEET 7 AA4 7 MET A 527 ASP A 528 -1 O MET A 527 N HIS A 494 SSBOND 1 CYS A 338 CYS A 355 1555 1555 2.08 LINK O ASN A 206 CA CA A 601 1555 1555 2.27 LINK OD1 ASP A 209 CA CA A 601 1555 1555 2.77 LINK O ASN A 211 CA CA A 601 1555 1555 2.35 LINK O THR A 214 CA CA A 601 1555 1555 2.48 LINK OG1 THR A 214 CA CA A 601 1555 1555 2.64 LINK O THR A 307 CA CA A 601 1555 1555 2.44 LINK OD1 ASP A 351 K K A 602 1555 1555 2.61 LINK OD2 ASP A 351 K K A 602 1555 1555 2.89 LINK O THR A 353 K K A 602 1555 1555 2.56 LINK OG1 THR A 353 K K A 602 1555 1555 2.61 LINK OE2 GLU A 357 K K A 602 1555 1555 2.58 SITE 1 AC1 5 ASN A 206 ASP A 209 ASN A 211 THR A 214 SITE 2 AC1 5 THR A 307 SITE 1 AC2 3 ASP A 351 THR A 353 GLU A 357 SITE 1 AC3 4 TYR A 243 ARG A 248 TRP A 303 SER A 305 SITE 1 AC4 3 TYR A 390 LYS A 429 ARG A 452 CRYST1 74.317 74.317 179.733 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013456 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013456 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005564 0.00000