HEADER HYDROLASE 24-MAY-17 5XNT TITLE STRUCTURE OF CYP106A2 FROM BACILLUS SP. PAMC 23377 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME P450 CYP106; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS BUTANOLIVORANS; SOURCE 3 ORGANISM_TAXID: 421767; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BACILLUS SP. CYTOCHROME P450 STEROID HYDROXYLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.W.LEE,K.-H.KIM,D.BIKASH,S.-H.PARK,H.PARK,T.-J.OH,J.H.LEE REVDAT 1 04-APR-18 5XNT 0 JRNL AUTH K.H.KIM,C.W.LEE,B.DANGI,S.H.PARK,H.PARK,T.J.OH,J.H.LEE JRNL TITL CRYSTAL STRUCTURE AND FUNCTIONAL CHARACTERIZATION OF A JRNL TITL 2 CYTOCHROME P450 (BACYP106A2) FROMBACILLUSSP. PAMC 23377. JRNL REF J. MICROBIOL. BIOTECHNOL. V. 27 1472 2017 JRNL REFN ESSN 1738-8872 JRNL PMID 28633515 JRNL DOI 10.4014/JMB.1706.06013 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 13914 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 714 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1026 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.1880 REMARK 3 BIN FREE R VALUE SET COUNT : 43 REMARK 3 BIN FREE R VALUE : 0.3210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3196 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 43 REMARK 3 SOLVENT ATOMS : 24 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.03000 REMARK 3 B12 (A**2) : -0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.021 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.342 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.252 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.218 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3313 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3092 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4499 ; 1.656 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7188 ; 1.035 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 390 ; 7.353 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 160 ;36.278 ;24.812 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 601 ;18.699 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;18.390 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 499 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3621 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 658 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1566 ; 4.033 ; 5.466 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1565 ; 4.027 ; 5.463 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1954 ; 6.156 ; 8.188 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1955 ; 6.157 ; 8.192 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1745 ; 4.779 ; 6.036 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1743 ; 4.777 ; 6.038 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2544 ; 7.683 ; 8.783 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3696 ; 9.891 ;63.014 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3697 ; 9.890 ;63.013 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5XNT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1300003853. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14704 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 11.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 40.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CACODYLATE:HCL PH 6.5, REMARK 280 1.26 M AMMONIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 94.07200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 188.14400 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 141.10800 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 235.18000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 47.03600 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 94.07200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 188.14400 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 235.18000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 141.10800 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 47.03600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 GLU A 3 REMARK 465 VAL A 4 REMARK 465 ILE A 5 REMARK 465 ALA A 6 REMARK 465 ARG A 68 REMARK 465 THR A 69 REMARK 465 THR A 70 REMARK 465 ILE A 71 REMARK 465 SER A 72 REMARK 465 VAL A 73 REMARK 465 GLY A 74 REMARK 465 THR A 75 REMARK 465 ASP A 76 REMARK 465 SER A 77 REMARK 465 GLU A 78 REMARK 465 GLU A 79 REMARK 465 GLY A 80 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 10 -50.56 162.72 REMARK 500 THR A 11 -70.54 -65.84 REMARK 500 ARG A 12 82.52 54.46 REMARK 500 SER A 21 74.09 -119.14 REMARK 500 PRO A 22 40.69 -87.50 REMARK 500 ASP A 33 56.65 -159.17 REMARK 500 ASP A 84 -56.94 116.33 REMARK 500 GLU A 90 41.42 -100.81 REMARK 500 LEU A 142 -54.83 -147.35 REMARK 500 PRO A 175 89.82 -55.64 REMARK 500 PHE A 176 -170.29 42.03 REMARK 500 ASP A 177 -152.08 -94.12 REMARK 500 GLN A 181 -127.30 -130.52 REMARK 500 ASP A 263 108.09 -160.90 REMARK 500 LEU A 291 96.03 12.12 REMARK 500 ASP A 303 -88.05 -83.79 REMARK 500 LEU A 304 -49.62 61.37 REMARK 500 PHE A 354 123.77 -34.60 REMARK 500 THR A 410 -145.26 54.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 290 LEU A 291 -135.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 355 SG REMARK 620 2 HEM A 501 NA 98.9 REMARK 620 3 HEM A 501 NB 84.2 89.3 REMARK 620 4 HEM A 501 NC 83.0 176.8 88.3 REMARK 620 5 HEM A 501 ND 97.4 90.8 178.3 91.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 501 DBREF 5XNT A 1 411 PDB 5XNT 5XNT 1 411 SEQRES 1 A 411 MET LYS GLU VAL ILE ALA ILE LYS GLU PHE THR ARG PHE SEQRES 2 A 411 LYS THR ARG THR GLU GLU PHE SER PRO TYR ALA TRP CYS SEQRES 3 A 411 LYS ARG MET LEU GLU ASN ASP PRO VAL SER TYR HIS GLU SEQRES 4 A 411 GLY THR ASP THR TRP ASN VAL PHE LYS TYR GLU ASP VAL SEQRES 5 A 411 LYS ARG VAL LEU SER ASP TYR LYS HIS PHE SER SER VAL SEQRES 6 A 411 ARG LYS ARG THR THR ILE SER VAL GLY THR ASP SER GLU SEQRES 7 A 411 GLU GLY SER VAL PRO ASP LYS ILE LYS ILE THR GLU ALA SEQRES 8 A 411 ASP PRO PRO GLU HIS ARG LYS ARG ARG SER LEU LEU ALA SEQRES 9 A 411 ALA ALA PHE THR PRO ARG SER LEU GLN ASN TRP GLU PRO SEQRES 10 A 411 ARG ILE GLN GLU ILE ALA ASP GLU LEU ILE GLU GLU MET SEQRES 11 A 411 ASP GLU GLU THR GLU ILE ASP ILE VAL GLN SER LEU ALA SEQRES 12 A 411 SER PRO LEU PRO ILE ILE VAL MET SER ASP LEU MET GLY SEQRES 13 A 411 VAL PRO SER LYS ASP ARG LEU LEU PHE LYS LYS TRP VAL SEQRES 14 A 411 ASP ILE LEU PHE LEU PRO PHE ASP LYS GLU LYS GLN GLU SEQRES 15 A 411 GLU VAL ASN GLU LEU LYS GLN VAL ALA ALA LYS GLU TYR SEQRES 16 A 411 TYR GLN TYR LEU TYR PRO ILE VAL VAL GLN LYS ARG LEU SEQRES 17 A 411 ASN PRO ALA ASP ASP ILE ILE SER ASP LEU LEU LYS ALA SEQRES 18 A 411 GLU VAL ASP GLY GLU MET PHE THR ASP ASP GLU VAL VAL SEQRES 19 A 411 ARG THR THR MET LEU ILE LEU GLY ALA GLY VAL GLU THR SEQRES 20 A 411 THR SER HIS LEU LEU ALA ASN SER PHE TYR SER LEU LEU SEQRES 21 A 411 TYR ASP ASP LYS GLU VAL TYR GLN GLU LEU HIS GLU ASN SEQRES 22 A 411 LEU ASP LEU VAL PRO GLN ALA VAL GLU GLU MET LEU ARG SEQRES 23 A 411 TYR ARG PHE ASN LEU ILE LYS LEU ASP ARG THR VAL LYS SEQRES 24 A 411 GLU ASP ASN ASP LEU LEU GLY VAL GLU LEU LYS GLU GLY SEQRES 25 A 411 GLU ASN VAL VAL VAL TRP MET SER ALA ALA ASN LEU ASP SEQRES 26 A 411 GLU GLU MET PHE GLU ASP ALA PHE THR LEU ASN ILE HIS SEQRES 27 A 411 ARG PRO ASN ASN LYS LYS HIS LEU THR PHE GLY ASN GLY SEQRES 28 A 411 PRO HIS PHE CYS LEU GLY ALA PRO LEU ALA ARG LEU GLU SEQRES 29 A 411 ALA LYS ILE ALA LEU THR THR PHE LEU LYS LYS PHE LYS SEQRES 30 A 411 HIS ILE GLU ALA VAL PRO SER PHE GLN LEU GLU ASP ASN SEQRES 31 A 411 LEU THR ASP SER ALA THR GLY GLN THR LEU THR SER LEU SEQRES 32 A 411 PRO LEU LYS ALA CYS ARG THR LEU HET HEM A 501 43 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 HOH *24(H2 O) HELIX 1 AA1 ILE A 7 ARG A 12 1 6 HELIX 2 AA2 THR A 15 SER A 21 1 7 HELIX 3 AA3 PRO A 22 ASP A 33 1 12 HELIX 4 AA4 LYS A 48 ASP A 58 1 11 HELIX 5 AA5 LYS A 87 ALA A 91 5 5 HELIX 6 AA6 PRO A 94 ALA A 105 1 12 HELIX 7 AA7 THR A 108 GLU A 129 1 22 HELIX 8 AA8 ILE A 138 LEU A 142 1 5 HELIX 9 AA9 SER A 144 GLY A 156 1 13 HELIX 10 AB1 PRO A 158 LYS A 160 5 3 HELIX 11 AB2 ASP A 161 LEU A 174 1 14 HELIX 12 AB3 GLU A 183 ASN A 209 1 27 HELIX 13 AB4 ASP A 213 ALA A 221 1 9 HELIX 14 AB5 THR A 229 ASP A 262 1 34 HELIX 15 AB6 GLU A 265 ASN A 273 1 9 HELIX 16 AB7 LEU A 276 ARG A 288 1 13 HELIX 17 AB8 MET A 319 ASN A 323 1 5 HELIX 18 AB9 ASN A 341 HIS A 345 5 5 HELIX 19 AC1 GLY A 357 LYS A 375 1 19 SHEET 1 AA1 5 VAL A 35 TYR A 37 0 SHEET 2 AA1 5 THR A 43 VAL A 46 -1 O ASN A 45 N SER A 36 SHEET 3 AA1 5 ASN A 314 TRP A 318 1 O ASN A 314 N TRP A 44 SHEET 4 AA1 5 LYS A 293 VAL A 298 -1 N LEU A 294 O VAL A 317 SHEET 5 AA1 5 PHE A 62 SER A 63 -1 N SER A 63 O THR A 297 SHEET 1 AA2 3 ILE A 136 ASP A 137 0 SHEET 2 AA2 3 PRO A 404 ARG A 409 -1 O LEU A 405 N ILE A 136 SHEET 3 AA2 3 PHE A 376 ALA A 381 -1 N GLU A 380 O LYS A 406 SHEET 1 AA3 2 LEU A 391 SER A 394 0 SHEET 2 AA3 2 GLY A 397 LEU A 400 -1 O THR A 399 N THR A 392 SSBOND 1 CYS A 408 CYS A 408 1555 12555 2.68 LINK SG CYS A 355 FE HEM A 501 1555 1555 2.28 CISPEP 1 PRO A 93 PRO A 94 0 11.12 SITE 1 AC1 16 ILE A 88 HIS A 96 ARG A 100 PHE A 107 SITE 2 AC1 16 ALA A 243 GLY A 244 THR A 247 THR A 248 SITE 3 AC1 16 LEU A 294 ARG A 296 THR A 347 PHE A 348 SITE 4 AC1 16 GLY A 349 HIS A 353 CYS A 355 GLY A 357 CRYST1 77.658 77.658 282.216 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012877 0.007435 0.000000 0.00000 SCALE2 0.000000 0.014869 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003543 0.00000