HEADER REPLICATION 30-MAY-17 5XOR TITLE CRYSTAL STRUCTURE OF N-TERMINAL REPLICASE PROTEIN OF PORCINE TITLE 2 CIRCOVIRUS TYPE 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: REP PROTEIN; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 FRAGMENT: UNP RESIDUES 1-150; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PORCINE CIRCOVIRUS 2; SOURCE 3 ORGANISM_COMMON: PCV2; SOURCE 4 ORGANISM_TAXID: 85708; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS PCV2, REP, DIMER, REPLICATION EXPDTA X-RAY DIFFRACTION AUTHOR Y.SONG,G.PENG REVDAT 3 22-NOV-23 5XOR 1 REMARK REVDAT 2 19-SEP-18 5XOR 1 JRNL REVDAT 1 04-JUL-18 5XOR 0 JRNL AUTH G.LUO,X.ZHU,Y.LV,B.LV,J.FANG,S.CAO,H.CHEN,G.PENG,Y.SONG JRNL TITL CRYSTAL STRUCTURE OF THE DIMERIZED N TERMINUS OF PORCINE JRNL TITL 2 CIRCOVIRUS TYPE 2 REPLICASE PROTEIN REVEALS A NOVEL JRNL TITL 3 ANTIVIRAL INTERFACE JRNL REF J. VIROL. V. 92 2018 JRNL REFN ESSN 1098-5514 JRNL PMID 29976661 JRNL DOI 10.1128/JVI.00724-18 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 3 NUMBER OF REFLECTIONS : 38981 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.660 REMARK 3 FREE R VALUE TEST SET COUNT : 3764 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.3453 - 8.0794 0.85 1183 116 0.1779 0.1921 REMARK 3 2 8.0794 - 6.4201 0.93 1278 138 0.2128 0.2438 REMARK 3 3 6.4201 - 5.6106 0.93 1279 144 0.2078 0.2971 REMARK 3 4 5.6106 - 5.0986 0.92 1231 137 0.2107 0.2512 REMARK 3 5 5.0986 - 4.7337 0.92 1286 127 0.1764 0.1958 REMARK 3 6 4.7337 - 4.4549 0.92 1266 132 0.1683 0.2685 REMARK 3 7 4.4549 - 4.2320 0.94 1275 137 0.1845 0.2551 REMARK 3 8 4.2320 - 4.0479 0.94 1303 145 0.2026 0.2502 REMARK 3 9 4.0479 - 3.8922 0.93 1302 123 0.2141 0.2768 REMARK 3 10 3.8922 - 3.7580 0.94 1318 142 0.2210 0.3012 REMARK 3 11 3.7580 - 3.6405 0.95 1282 157 0.2293 0.2839 REMARK 3 12 3.6405 - 3.5365 0.96 1306 121 0.2131 0.2883 REMARK 3 13 3.5365 - 3.4435 0.95 1303 139 0.2456 0.2775 REMARK 3 14 3.4435 - 3.3595 0.96 1331 163 0.2471 0.3774 REMARK 3 15 3.3595 - 3.2832 0.96 1301 139 0.2565 0.3859 REMARK 3 16 3.2832 - 3.2133 0.97 1354 146 0.2556 0.3294 REMARK 3 17 3.2133 - 3.1491 0.97 1343 136 0.2628 0.3204 REMARK 3 18 3.1491 - 3.0896 0.97 1272 141 0.2507 0.3801 REMARK 3 19 3.0896 - 3.0345 0.97 1410 162 0.2639 0.3345 REMARK 3 20 3.0345 - 2.9831 0.98 1333 124 0.2888 0.3501 REMARK 3 21 2.9831 - 2.9350 0.98 1296 160 0.2890 0.3738 REMARK 3 22 2.9350 - 2.8898 0.98 1386 148 0.2955 0.4363 REMARK 3 23 2.8898 - 2.8473 0.98 1351 121 0.3083 0.3817 REMARK 3 24 2.8473 - 2.8072 0.97 1360 115 0.3055 0.3272 REMARK 3 25 2.8072 - 2.7693 0.97 1260 176 0.2973 0.3786 REMARK 3 26 2.7693 - 2.7333 0.97 1375 151 0.3111 0.3447 REMARK 3 27 2.7333 - 2.6992 0.87 1233 124 0.3139 0.3683 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.620 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4140 REMARK 3 ANGLE : 1.154 5553 REMARK 3 CHIRALITY : 0.050 555 REMARK 3 PLANARITY : 0.007 726 REMARK 3 DIHEDRAL : 4.043 2495 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SF FILE CONTAINS FRIEDEL PAIRS UNDER REMARK 3 I/F_MINUS AND I/F_PLUS COLUMNS. REMARK 4 REMARK 4 5XOR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1300003874. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BSRF REMARK 200 BEAMLINE : 3W1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46536 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 2HW0 REMARK 200 REMARK 200 REMARK: THE ENTRY CONTAINS FRIEDEL PAIRS IN F_PLUS/MINUS COLUMNS. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES SODIUM PH 8.0, 0.45 M REMARK 280 SODIUM CITRATE TRIBASIC DIHYDRATE, 50% (+/-)-2-METHYL-2,4- REMARK 280 PENTANEDIOL, EVAPORATION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 42.46600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.60650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 42.46600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.60650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 SER A 3 REMARK 465 LYS A 4 REMARK 465 LYS A 5 REMARK 465 ASN A 6 REMARK 465 GLY A 7 REMARK 465 ARG A 8 REMARK 465 SER A 9 REMARK 465 GLY A 10 REMARK 465 PRO A 11 REMARK 465 ASN A 50 REMARK 465 GLU A 51 REMARK 465 GLU A 52 REMARK 465 GLN A 113 REMARK 465 GLY A 114 REMARK 465 GLN A 115 REMARK 465 ARG A 116 REMARK 465 SER A 117 REMARK 465 ASP A 118 REMARK 465 LEU A 119 REMARK 465 SER A 120 REMARK 465 THR A 121 REMARK 465 ALA A 122 REMARK 465 VAL A 123 REMARK 465 SER A 124 REMARK 465 THR A 125 REMARK 465 LEU A 126 REMARK 465 LEU A 127 REMARK 465 GLU A 128 REMARK 465 SER A 129 REMARK 465 GLY A 130 REMARK 465 SER A 131 REMARK 465 LEU A 132 REMARK 465 VAL A 133 REMARK 465 THR A 134 REMARK 465 VAL A 135 REMARK 465 ALA A 136 REMARK 465 GLU A 137 REMARK 465 GLN A 138 REMARK 465 HIS A 139 REMARK 465 PRO A 140 REMARK 465 VAL A 141 REMARK 465 THR A 142 REMARK 465 PHE A 143 REMARK 465 VAL A 144 REMARK 465 ARG A 145 REMARK 465 ASN A 146 REMARK 465 PHE A 147 REMARK 465 ARG A 148 REMARK 465 GLY A 149 REMARK 465 LEU A 150 REMARK 465 LEU A 151 REMARK 465 GLU A 152 REMARK 465 HIS A 153 REMARK 465 HIS A 154 REMARK 465 HIS A 155 REMARK 465 HIS A 156 REMARK 465 HIS A 157 REMARK 465 HIS A 158 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 SER B 3 REMARK 465 LYS B 4 REMARK 465 LYS B 5 REMARK 465 ASN B 6 REMARK 465 GLY B 7 REMARK 465 ARG B 8 REMARK 465 SER B 9 REMARK 465 GLY B 10 REMARK 465 PRO B 11 REMARK 465 GLN B 113 REMARK 465 GLY B 114 REMARK 465 GLN B 115 REMARK 465 ARG B 116 REMARK 465 SER B 117 REMARK 465 ASP B 118 REMARK 465 LEU B 119 REMARK 465 SER B 120 REMARK 465 THR B 121 REMARK 465 ALA B 122 REMARK 465 VAL B 123 REMARK 465 SER B 124 REMARK 465 THR B 125 REMARK 465 LEU B 126 REMARK 465 LEU B 127 REMARK 465 GLU B 128 REMARK 465 SER B 129 REMARK 465 GLY B 130 REMARK 465 SER B 131 REMARK 465 LEU B 132 REMARK 465 VAL B 133 REMARK 465 THR B 134 REMARK 465 VAL B 135 REMARK 465 ALA B 136 REMARK 465 GLU B 137 REMARK 465 GLN B 138 REMARK 465 HIS B 139 REMARK 465 PRO B 140 REMARK 465 VAL B 141 REMARK 465 THR B 142 REMARK 465 PHE B 143 REMARK 465 VAL B 144 REMARK 465 ARG B 145 REMARK 465 ASN B 146 REMARK 465 PHE B 147 REMARK 465 ARG B 148 REMARK 465 GLY B 149 REMARK 465 LEU B 150 REMARK 465 LEU B 151 REMARK 465 GLU B 152 REMARK 465 HIS B 153 REMARK 465 HIS B 154 REMARK 465 HIS B 155 REMARK 465 HIS B 156 REMARK 465 HIS B 157 REMARK 465 HIS B 158 REMARK 465 MET C 1 REMARK 465 PRO C 2 REMARK 465 SER C 3 REMARK 465 LYS C 4 REMARK 465 LYS C 5 REMARK 465 ASN C 6 REMARK 465 GLY C 7 REMARK 465 ARG C 8 REMARK 465 SER C 9 REMARK 465 GLY C 10 REMARK 465 GLU C 51 REMARK 465 GLU C 52 REMARK 465 GLY C 53 REMARK 465 GLN C 113 REMARK 465 GLY C 114 REMARK 465 GLN C 115 REMARK 465 ARG C 116 REMARK 465 SER C 117 REMARK 465 ASP C 118 REMARK 465 LEU C 119 REMARK 465 SER C 120 REMARK 465 THR C 121 REMARK 465 ALA C 122 REMARK 465 VAL C 123 REMARK 465 SER C 124 REMARK 465 THR C 125 REMARK 465 LEU C 126 REMARK 465 LEU C 127 REMARK 465 GLU C 128 REMARK 465 SER C 129 REMARK 465 GLY C 130 REMARK 465 SER C 131 REMARK 465 LEU C 132 REMARK 465 VAL C 133 REMARK 465 THR C 134 REMARK 465 VAL C 135 REMARK 465 ALA C 136 REMARK 465 GLU C 137 REMARK 465 GLN C 138 REMARK 465 HIS C 139 REMARK 465 PRO C 140 REMARK 465 VAL C 141 REMARK 465 THR C 142 REMARK 465 PHE C 143 REMARK 465 VAL C 144 REMARK 465 ARG C 145 REMARK 465 ASN C 146 REMARK 465 PHE C 147 REMARK 465 ARG C 148 REMARK 465 GLY C 149 REMARK 465 LEU C 150 REMARK 465 LEU C 151 REMARK 465 GLU C 152 REMARK 465 HIS C 153 REMARK 465 HIS C 154 REMARK 465 HIS C 155 REMARK 465 HIS C 156 REMARK 465 HIS C 157 REMARK 465 HIS C 158 REMARK 465 MET D 1 REMARK 465 PRO D 2 REMARK 465 SER D 3 REMARK 465 LYS D 4 REMARK 465 LYS D 5 REMARK 465 ASN D 6 REMARK 465 GLY D 7 REMARK 465 ARG D 8 REMARK 465 SER D 9 REMARK 465 GLY D 10 REMARK 465 PRO D 11 REMARK 465 GLU D 51 REMARK 465 GLU D 52 REMARK 465 GLY D 53 REMARK 465 GLN D 113 REMARK 465 GLY D 114 REMARK 465 GLN D 115 REMARK 465 ARG D 116 REMARK 465 SER D 117 REMARK 465 ASP D 118 REMARK 465 LEU D 119 REMARK 465 SER D 120 REMARK 465 THR D 121 REMARK 465 ALA D 122 REMARK 465 VAL D 123 REMARK 465 SER D 124 REMARK 465 THR D 125 REMARK 465 LEU D 126 REMARK 465 LEU D 127 REMARK 465 GLU D 128 REMARK 465 SER D 129 REMARK 465 GLY D 130 REMARK 465 SER D 131 REMARK 465 LEU D 132 REMARK 465 VAL D 133 REMARK 465 THR D 134 REMARK 465 VAL D 135 REMARK 465 ALA D 136 REMARK 465 GLU D 137 REMARK 465 GLN D 138 REMARK 465 HIS D 139 REMARK 465 PRO D 140 REMARK 465 VAL D 141 REMARK 465 THR D 142 REMARK 465 PHE D 143 REMARK 465 VAL D 144 REMARK 465 ARG D 145 REMARK 465 ASN D 146 REMARK 465 PHE D 147 REMARK 465 ARG D 148 REMARK 465 GLY D 149 REMARK 465 LEU D 150 REMARK 465 LEU D 151 REMARK 465 GLU D 152 REMARK 465 HIS D 153 REMARK 465 HIS D 154 REMARK 465 HIS D 155 REMARK 465 HIS D 156 REMARK 465 HIS D 157 REMARK 465 HIS D 158 REMARK 465 MET E 1 REMARK 465 PRO E 2 REMARK 465 SER E 3 REMARK 465 LYS E 4 REMARK 465 LYS E 5 REMARK 465 ASN E 6 REMARK 465 GLY E 7 REMARK 465 ARG E 8 REMARK 465 SER E 9 REMARK 465 GLY E 10 REMARK 465 PRO E 11 REMARK 465 GLN E 12 REMARK 465 ASN E 50 REMARK 465 GLU E 51 REMARK 465 GLU E 52 REMARK 465 GLY E 53 REMARK 465 GLN E 113 REMARK 465 GLY E 114 REMARK 465 GLN E 115 REMARK 465 ARG E 116 REMARK 465 SER E 117 REMARK 465 ASP E 118 REMARK 465 LEU E 119 REMARK 465 SER E 120 REMARK 465 THR E 121 REMARK 465 ALA E 122 REMARK 465 VAL E 123 REMARK 465 SER E 124 REMARK 465 THR E 125 REMARK 465 LEU E 126 REMARK 465 LEU E 127 REMARK 465 GLU E 128 REMARK 465 SER E 129 REMARK 465 GLY E 130 REMARK 465 SER E 131 REMARK 465 LEU E 132 REMARK 465 VAL E 133 REMARK 465 THR E 134 REMARK 465 VAL E 135 REMARK 465 ALA E 136 REMARK 465 GLU E 137 REMARK 465 GLN E 138 REMARK 465 HIS E 139 REMARK 465 PRO E 140 REMARK 465 VAL E 141 REMARK 465 THR E 142 REMARK 465 PHE E 143 REMARK 465 VAL E 144 REMARK 465 ARG E 145 REMARK 465 ASN E 146 REMARK 465 PHE E 147 REMARK 465 ARG E 148 REMARK 465 GLY E 149 REMARK 465 LEU E 150 REMARK 465 LEU E 151 REMARK 465 GLU E 152 REMARK 465 HIS E 153 REMARK 465 HIS E 154 REMARK 465 HIS E 155 REMARK 465 HIS E 156 REMARK 465 HIS E 157 REMARK 465 HIS E 158 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU E 26 O HOH E 201 1.76 REMARK 500 O ASN A 22 NH2 ARG A 80 1.99 REMARK 500 O HOH A 203 O HOH A 211 2.10 REMARK 500 OE1 GLU A 95 O HOH A 201 2.10 REMARK 500 O ASN D 22 NH2 ARG D 80 2.12 REMARK 500 NH1 ARG E 16 OD1 ASP E 90 2.12 REMARK 500 O LYS B 94 OG SER B 98 2.13 REMARK 500 OE1 GLN E 68 O HOH E 202 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG E 33 NE - CZ - NH1 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 55 86.48 65.76 REMARK 500 CYS A 107 119.22 -170.95 REMARK 500 ASN C 23 93.25 38.60 REMARK 500 THR C 55 83.58 42.61 REMARK 500 PRO C 56 170.00 -58.65 REMARK 500 ASN D 23 62.45 62.28 REMARK 500 SER D 38 1.05 -68.89 REMARK 500 THR D 55 92.36 65.85 REMARK 500 LYS D 99 -54.28 -17.66 REMARK 500 ASN D 102 65.81 -119.68 REMARK 500 ASN E 23 81.39 46.34 REMARK 500 SER E 25 153.16 -48.42 REMARK 500 THR E 55 84.20 44.10 REMARK 500 PHE E 70 -67.27 -6.19 REMARK 500 REMARK 500 REMARK: NULL DBREF 5XOR A 1 150 UNP A9YPG7 A9YPG7_PCV2 1 150 DBREF 5XOR B 1 150 UNP A9YPG7 A9YPG7_PCV2 1 150 DBREF 5XOR C 1 150 UNP A9YPG7 A9YPG7_PCV2 1 150 DBREF 5XOR D 1 150 UNP A9YPG7 A9YPG7_PCV2 1 150 DBREF 5XOR E 1 150 UNP A9YPG7 A9YPG7_PCV2 1 150 SEQADV 5XOR LEU A 151 UNP A9YPG7 EXPRESSION TAG SEQADV 5XOR GLU A 152 UNP A9YPG7 EXPRESSION TAG SEQADV 5XOR HIS A 153 UNP A9YPG7 EXPRESSION TAG SEQADV 5XOR HIS A 154 UNP A9YPG7 EXPRESSION TAG SEQADV 5XOR HIS A 155 UNP A9YPG7 EXPRESSION TAG SEQADV 5XOR HIS A 156 UNP A9YPG7 EXPRESSION TAG SEQADV 5XOR HIS A 157 UNP A9YPG7 EXPRESSION TAG SEQADV 5XOR HIS A 158 UNP A9YPG7 EXPRESSION TAG SEQADV 5XOR LEU B 151 UNP A9YPG7 EXPRESSION TAG SEQADV 5XOR GLU B 152 UNP A9YPG7 EXPRESSION TAG SEQADV 5XOR HIS B 153 UNP A9YPG7 EXPRESSION TAG SEQADV 5XOR HIS B 154 UNP A9YPG7 EXPRESSION TAG SEQADV 5XOR HIS B 155 UNP A9YPG7 EXPRESSION TAG SEQADV 5XOR HIS B 156 UNP A9YPG7 EXPRESSION TAG SEQADV 5XOR HIS B 157 UNP A9YPG7 EXPRESSION TAG SEQADV 5XOR HIS B 158 UNP A9YPG7 EXPRESSION TAG SEQADV 5XOR LEU C 151 UNP A9YPG7 EXPRESSION TAG SEQADV 5XOR GLU C 152 UNP A9YPG7 EXPRESSION TAG SEQADV 5XOR HIS C 153 UNP A9YPG7 EXPRESSION TAG SEQADV 5XOR HIS C 154 UNP A9YPG7 EXPRESSION TAG SEQADV 5XOR HIS C 155 UNP A9YPG7 EXPRESSION TAG SEQADV 5XOR HIS C 156 UNP A9YPG7 EXPRESSION TAG SEQADV 5XOR HIS C 157 UNP A9YPG7 EXPRESSION TAG SEQADV 5XOR HIS C 158 UNP A9YPG7 EXPRESSION TAG SEQADV 5XOR LEU D 151 UNP A9YPG7 EXPRESSION TAG SEQADV 5XOR GLU D 152 UNP A9YPG7 EXPRESSION TAG SEQADV 5XOR HIS D 153 UNP A9YPG7 EXPRESSION TAG SEQADV 5XOR HIS D 154 UNP A9YPG7 EXPRESSION TAG SEQADV 5XOR HIS D 155 UNP A9YPG7 EXPRESSION TAG SEQADV 5XOR HIS D 156 UNP A9YPG7 EXPRESSION TAG SEQADV 5XOR HIS D 157 UNP A9YPG7 EXPRESSION TAG SEQADV 5XOR HIS D 158 UNP A9YPG7 EXPRESSION TAG SEQADV 5XOR LEU E 151 UNP A9YPG7 EXPRESSION TAG SEQADV 5XOR GLU E 152 UNP A9YPG7 EXPRESSION TAG SEQADV 5XOR HIS E 153 UNP A9YPG7 EXPRESSION TAG SEQADV 5XOR HIS E 154 UNP A9YPG7 EXPRESSION TAG SEQADV 5XOR HIS E 155 UNP A9YPG7 EXPRESSION TAG SEQADV 5XOR HIS E 156 UNP A9YPG7 EXPRESSION TAG SEQADV 5XOR HIS E 157 UNP A9YPG7 EXPRESSION TAG SEQADV 5XOR HIS E 158 UNP A9YPG7 EXPRESSION TAG SEQRES 1 A 158 MET PRO SER LYS LYS ASN GLY ARG SER GLY PRO GLN PRO SEQRES 2 A 158 HIS LYS ARG TRP VAL PHE THR LEU ASN ASN PRO SER GLU SEQRES 3 A 158 ASP GLU ARG LYS LYS ILE ARG ASP LEU PRO ILE SER LEU SEQRES 4 A 158 PHE ASP TYR PHE ILE VAL GLY GLU GLU GLY ASN GLU GLU SEQRES 5 A 158 GLY ARG THR PRO HIS LEU GLN GLY PHE ALA ASN PHE VAL SEQRES 6 A 158 LYS LYS GLN THR PHE ASN LYS VAL LYS TRP TYR LEU GLY SEQRES 7 A 158 ALA ARG CYS HIS ILE GLU LYS ALA LYS GLY THR ASP GLN SEQRES 8 A 158 GLN ASN LYS GLU TYR CYS SER LYS GLU GLY ASN LEU LEU SEQRES 9 A 158 ILE GLU CYS GLY ALA PRO ARG SER GLN GLY GLN ARG SER SEQRES 10 A 158 ASP LEU SER THR ALA VAL SER THR LEU LEU GLU SER GLY SEQRES 11 A 158 SER LEU VAL THR VAL ALA GLU GLN HIS PRO VAL THR PHE SEQRES 12 A 158 VAL ARG ASN PHE ARG GLY LEU LEU GLU HIS HIS HIS HIS SEQRES 13 A 158 HIS HIS SEQRES 1 B 158 MET PRO SER LYS LYS ASN GLY ARG SER GLY PRO GLN PRO SEQRES 2 B 158 HIS LYS ARG TRP VAL PHE THR LEU ASN ASN PRO SER GLU SEQRES 3 B 158 ASP GLU ARG LYS LYS ILE ARG ASP LEU PRO ILE SER LEU SEQRES 4 B 158 PHE ASP TYR PHE ILE VAL GLY GLU GLU GLY ASN GLU GLU SEQRES 5 B 158 GLY ARG THR PRO HIS LEU GLN GLY PHE ALA ASN PHE VAL SEQRES 6 B 158 LYS LYS GLN THR PHE ASN LYS VAL LYS TRP TYR LEU GLY SEQRES 7 B 158 ALA ARG CYS HIS ILE GLU LYS ALA LYS GLY THR ASP GLN SEQRES 8 B 158 GLN ASN LYS GLU TYR CYS SER LYS GLU GLY ASN LEU LEU SEQRES 9 B 158 ILE GLU CYS GLY ALA PRO ARG SER GLN GLY GLN ARG SER SEQRES 10 B 158 ASP LEU SER THR ALA VAL SER THR LEU LEU GLU SER GLY SEQRES 11 B 158 SER LEU VAL THR VAL ALA GLU GLN HIS PRO VAL THR PHE SEQRES 12 B 158 VAL ARG ASN PHE ARG GLY LEU LEU GLU HIS HIS HIS HIS SEQRES 13 B 158 HIS HIS SEQRES 1 C 158 MET PRO SER LYS LYS ASN GLY ARG SER GLY PRO GLN PRO SEQRES 2 C 158 HIS LYS ARG TRP VAL PHE THR LEU ASN ASN PRO SER GLU SEQRES 3 C 158 ASP GLU ARG LYS LYS ILE ARG ASP LEU PRO ILE SER LEU SEQRES 4 C 158 PHE ASP TYR PHE ILE VAL GLY GLU GLU GLY ASN GLU GLU SEQRES 5 C 158 GLY ARG THR PRO HIS LEU GLN GLY PHE ALA ASN PHE VAL SEQRES 6 C 158 LYS LYS GLN THR PHE ASN LYS VAL LYS TRP TYR LEU GLY SEQRES 7 C 158 ALA ARG CYS HIS ILE GLU LYS ALA LYS GLY THR ASP GLN SEQRES 8 C 158 GLN ASN LYS GLU TYR CYS SER LYS GLU GLY ASN LEU LEU SEQRES 9 C 158 ILE GLU CYS GLY ALA PRO ARG SER GLN GLY GLN ARG SER SEQRES 10 C 158 ASP LEU SER THR ALA VAL SER THR LEU LEU GLU SER GLY SEQRES 11 C 158 SER LEU VAL THR VAL ALA GLU GLN HIS PRO VAL THR PHE SEQRES 12 C 158 VAL ARG ASN PHE ARG GLY LEU LEU GLU HIS HIS HIS HIS SEQRES 13 C 158 HIS HIS SEQRES 1 D 158 MET PRO SER LYS LYS ASN GLY ARG SER GLY PRO GLN PRO SEQRES 2 D 158 HIS LYS ARG TRP VAL PHE THR LEU ASN ASN PRO SER GLU SEQRES 3 D 158 ASP GLU ARG LYS LYS ILE ARG ASP LEU PRO ILE SER LEU SEQRES 4 D 158 PHE ASP TYR PHE ILE VAL GLY GLU GLU GLY ASN GLU GLU SEQRES 5 D 158 GLY ARG THR PRO HIS LEU GLN GLY PHE ALA ASN PHE VAL SEQRES 6 D 158 LYS LYS GLN THR PHE ASN LYS VAL LYS TRP TYR LEU GLY SEQRES 7 D 158 ALA ARG CYS HIS ILE GLU LYS ALA LYS GLY THR ASP GLN SEQRES 8 D 158 GLN ASN LYS GLU TYR CYS SER LYS GLU GLY ASN LEU LEU SEQRES 9 D 158 ILE GLU CYS GLY ALA PRO ARG SER GLN GLY GLN ARG SER SEQRES 10 D 158 ASP LEU SER THR ALA VAL SER THR LEU LEU GLU SER GLY SEQRES 11 D 158 SER LEU VAL THR VAL ALA GLU GLN HIS PRO VAL THR PHE SEQRES 12 D 158 VAL ARG ASN PHE ARG GLY LEU LEU GLU HIS HIS HIS HIS SEQRES 13 D 158 HIS HIS SEQRES 1 E 158 MET PRO SER LYS LYS ASN GLY ARG SER GLY PRO GLN PRO SEQRES 2 E 158 HIS LYS ARG TRP VAL PHE THR LEU ASN ASN PRO SER GLU SEQRES 3 E 158 ASP GLU ARG LYS LYS ILE ARG ASP LEU PRO ILE SER LEU SEQRES 4 E 158 PHE ASP TYR PHE ILE VAL GLY GLU GLU GLY ASN GLU GLU SEQRES 5 E 158 GLY ARG THR PRO HIS LEU GLN GLY PHE ALA ASN PHE VAL SEQRES 6 E 158 LYS LYS GLN THR PHE ASN LYS VAL LYS TRP TYR LEU GLY SEQRES 7 E 158 ALA ARG CYS HIS ILE GLU LYS ALA LYS GLY THR ASP GLN SEQRES 8 E 158 GLN ASN LYS GLU TYR CYS SER LYS GLU GLY ASN LEU LEU SEQRES 9 E 158 ILE GLU CYS GLY ALA PRO ARG SER GLN GLY GLN ARG SER SEQRES 10 E 158 ASP LEU SER THR ALA VAL SER THR LEU LEU GLU SER GLY SEQRES 11 E 158 SER LEU VAL THR VAL ALA GLU GLN HIS PRO VAL THR PHE SEQRES 12 E 158 VAL ARG ASN PHE ARG GLY LEU LEU GLU HIS HIS HIS HIS SEQRES 13 E 158 HIS HIS FORMUL 6 HOH *64(H2 O) HELIX 1 AA1 SER A 25 ASP A 34 1 10 HELIX 2 AA2 PRO A 36 SER A 38 5 3 HELIX 3 AA3 THR A 69 GLY A 78 1 10 HELIX 4 AA4 THR A 89 SER A 98 1 10 HELIX 5 AA5 SER B 25 ASP B 34 1 10 HELIX 6 AA6 PRO B 36 SER B 38 5 3 HELIX 7 AA7 THR B 69 GLY B 78 1 10 HELIX 8 AA8 THR B 89 LYS B 99 1 11 HELIX 9 AA9 SER C 25 ASP C 34 1 10 HELIX 10 AB1 PRO C 36 SER C 38 5 3 HELIX 11 AB2 THR C 69 GLY C 78 1 10 HELIX 12 AB3 THR C 89 SER C 98 1 10 HELIX 13 AB4 SER D 25 ASP D 34 1 10 HELIX 14 AB5 PRO D 36 SER D 38 5 3 HELIX 15 AB6 THR D 69 GLY D 78 1 10 HELIX 16 AB7 THR D 89 LYS D 99 1 11 HELIX 17 AB8 SER E 25 ASP E 34 1 10 HELIX 18 AB9 PRO E 36 SER E 38 5 3 HELIX 19 AC1 THR E 69 LEU E 77 1 9 HELIX 20 AC2 THR E 89 SER E 98 1 10 SHEET 1 AA1 5 HIS A 82 LYS A 85 0 SHEET 2 AA1 5 HIS A 14 ASN A 22 -1 N VAL A 18 O GLU A 84 SHEET 3 AA1 5 HIS A 57 GLN A 68 -1 O GLN A 68 N HIS A 14 SHEET 4 AA1 5 PHE A 40 GLU A 48 -1 N TYR A 42 O ASN A 63 SHEET 5 AA1 5 LEU A 103 GLY A 108 -1 O LEU A 104 N VAL A 45 SHEET 1 AA2 5 HIS B 82 LYS B 85 0 SHEET 2 AA2 5 HIS B 14 ASN B 22 -1 N THR B 20 O HIS B 82 SHEET 3 AA2 5 HIS B 57 GLN B 68 -1 O GLN B 68 N HIS B 14 SHEET 4 AA2 5 PHE B 40 GLU B 48 -1 N TYR B 42 O ASN B 63 SHEET 5 AA2 5 LEU B 103 GLY B 108 -1 O LEU B 104 N VAL B 45 SHEET 1 AA3 5 HIS C 82 LYS C 85 0 SHEET 2 AA3 5 HIS C 14 ASN C 22 -1 N VAL C 18 O GLU C 84 SHEET 3 AA3 5 HIS C 57 GLN C 68 -1 O GLN C 68 N HIS C 14 SHEET 4 AA3 5 PHE C 40 GLU C 47 -1 N GLY C 46 O GLN C 59 SHEET 5 AA3 5 LEU C 103 GLY C 108 -1 O LEU C 104 N VAL C 45 SHEET 1 AA4 5 HIS D 82 LYS D 85 0 SHEET 2 AA4 5 HIS D 14 ASN D 22 -1 N THR D 20 O HIS D 82 SHEET 3 AA4 5 HIS D 57 GLN D 68 -1 O GLN D 68 N HIS D 14 SHEET 4 AA4 5 PHE D 40 GLU D 48 -1 N GLU D 48 O HIS D 57 SHEET 5 AA4 5 LEU D 103 GLY D 108 -1 O CYS D 107 N PHE D 43 SHEET 1 AA5 5 HIS E 82 LYS E 85 0 SHEET 2 AA5 5 HIS E 14 ASN E 22 -1 N THR E 20 O HIS E 82 SHEET 3 AA5 5 HIS E 57 GLN E 68 -1 O GLN E 68 N HIS E 14 SHEET 4 AA5 5 PHE E 40 GLU E 48 -1 N GLU E 48 O HIS E 57 SHEET 5 AA5 5 LEU E 103 GLY E 108 -1 O CYS E 107 N PHE E 43 CRYST1 84.932 71.213 131.718 90.00 104.34 90.00 C 1 2 1 20 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011774 0.000000 0.003010 0.00000 SCALE2 0.000000 0.014042 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007836 0.00000