HEADER IMMUNE SYSTEM 31-MAY-17 5XOT TITLE CRYSTAL STRUCTURE OF PHLA-B35 IN COMPLEX WITH TU55 T CELL RECEPTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-35 ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 25-300; COMPND 5 SYNONYM: MHC CLASS I ANTIGEN B*35; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: UNP RESIDUES 21-119; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: AN HIV REVERSE TRANSCRIPTASE EPITOPE; COMPND 15 CHAIN: C; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 4; COMPND 18 MOLECULE: THE DELTA CHAIN OF TU55 TCR; COMPND 19 CHAIN: D; COMPND 20 ENGINEERED: YES; COMPND 21 MOL_ID: 5; COMPND 22 MOLECULE: THE BETA CHAIN OF TU55 TCR; COMPND 23 CHAIN: E; COMPND 24 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HLA-B, HLAB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: B2M, CDABP0092, HDCMA22P; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 18 ORGANISM_TAXID: 11676; SOURCE 19 MOL_ID: 4; SOURCE 20 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 21 ORGANISM_TAXID: 9606; SOURCE 22 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 23 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 24 MOL_ID: 5; SOURCE 25 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 26 ORGANISM_TAXID: 9606; SOURCE 27 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 28 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS ANTIGEN PRESENTATION, MHC, PEPTIDE ANTIGEN, T CELL ACTIVATION, IMMUNE KEYWDS 2 SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR Y.SHI,J.QI,G.F.GAO REVDAT 6 30-OCT-24 5XOT 1 REMARK REVDAT 5 20-MAR-24 5XOT 1 SOURCE REVDAT 4 17-APR-19 5XOT 1 JRNL REVDAT 3 22-NOV-17 5XOT 1 JRNL REVDAT 2 30-AUG-17 5XOT 1 REMARK REVDAT 1 14-JUN-17 5XOT 0 JRNL AUTH Y.SHI,A.KAWANA-TACHIKAWA,F.GAO,J.QI,C.LIU,J.GAO,H.CHENG, JRNL AUTH 2 T.UENO,A.IWAMOTO,G.F.GAO JRNL TITL CONSERVED V DELTA 1 BINDING GEOMETRY IN A SETTING OF JRNL TITL 2 LOCUS-DISPARATE PHLA RECOGNITION BY DELTA / ALPHA BETA T JRNL TITL 3 CELL RECEPTORS (TCRS): INSIGHT INTO RECOGNITION OF HIV JRNL TITL 4 PEPTIDES BY TCRS. JRNL REF J. VIROL. V. 91 2017 JRNL REFN ESSN 1098-5514 JRNL PMID 28615212 JRNL DOI 10.1128/JVI.00725-17 REMARK 2 REMARK 2 RESOLUTION. 2.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.5_2 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.110 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.5 REMARK 3 NUMBER OF REFLECTIONS : 23597 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1227 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.5990 - 5.7897 0.99 2806 153 0.2041 0.2320 REMARK 3 2 5.7897 - 4.5983 0.99 2727 147 0.1784 0.2403 REMARK 3 3 4.5983 - 4.0179 0.99 2739 136 0.1685 0.1961 REMARK 3 4 4.0179 - 3.6509 0.98 2687 145 0.1818 0.2601 REMARK 3 5 3.6509 - 3.3894 0.97 2641 136 0.1977 0.2709 REMARK 3 6 3.3894 - 3.1897 0.93 2532 145 0.2045 0.2747 REMARK 3 7 3.1897 - 3.0300 0.86 2339 131 0.2200 0.2936 REMARK 3 8 3.0300 - 2.8982 0.77 2070 136 0.2317 0.3082 REMARK 3 9 2.8982 - 2.7867 0.67 1829 98 0.2399 0.3004 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.39 REMARK 3 B_SOL : 40.13 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.940 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 31.01110 REMARK 3 B22 (A**2) : -11.17350 REMARK 3 B33 (A**2) : -19.83750 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -17.01880 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 6871 REMARK 3 ANGLE : 0.695 9313 REMARK 3 CHIRALITY : 0.050 977 REMARK 3 PLANARITY : 0.003 1223 REMARK 3 DIHEDRAL : 18.554 2491 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -37.5370 -0.0097 -16.2187 REMARK 3 T TENSOR REMARK 3 T11: 0.3128 T22: 0.3067 REMARK 3 T33: 0.3158 T12: -0.0119 REMARK 3 T13: 0.0137 T23: -0.0140 REMARK 3 L TENSOR REMARK 3 L11: 0.2202 L22: 0.1739 REMARK 3 L33: 0.4821 L12: -0.1730 REMARK 3 L13: 0.2918 L23: -0.1836 REMARK 3 S TENSOR REMARK 3 S11: 0.0643 S12: -0.0038 S13: -0.0116 REMARK 3 S21: 0.0188 S22: -0.0252 S23: 0.0248 REMARK 3 S31: 0.0130 S32: 0.0013 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5XOT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1300003925. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NE3A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24542 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.787 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.7620 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.976 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5% V/V TACSIMATE PH 7.0, 0.1 M HEPES, REMARK 280 PH 7.3, 10% W/V POLYETHYLENE GLYCOL MONOMETHYL EITHER 5000, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 97.84350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.79800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 97.84350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.79800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 UNK D 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLN E 17 O GLU E 79 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 29 N - CA - C ANGL. DEV. = -17.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 29 -133.93 55.24 REMARK 500 ALA A 41 -72.13 -57.23 REMARK 500 ASP A 114 118.78 -160.57 REMARK 500 TYR A 123 -71.77 -121.78 REMARK 500 HIS A 188 145.62 165.04 REMARK 500 SER A 195 -148.28 -158.02 REMARK 500 GLN A 224 41.29 -100.29 REMARK 500 ARG A 239 -7.25 88.43 REMARK 500 ASN B 21 -153.34 -163.74 REMARK 500 TRP B 60 -13.68 85.94 REMARK 500 ARG D 16 -27.18 83.48 REMARK 500 LYS D 43 -10.57 75.04 REMARK 500 LYS D 68 76.04 -107.49 REMARK 500 VAL D 74 58.21 -141.87 REMARK 500 LEU D 81 113.88 -38.40 REMARK 500 SER D 86 109.82 -58.70 REMARK 500 ALA D 87 -178.62 -175.62 REMARK 500 ASN D 114 100.57 69.72 REMARK 500 ASP D 119 57.58 -162.60 REMARK 500 LYS D 129 -78.88 -82.77 REMARK 500 SER D 131 57.41 -60.81 REMARK 500 ASP D 132 -32.65 -141.32 REMARK 500 ASP D 198 31.09 -82.75 REMARK 500 ASN E 28 25.52 80.69 REMARK 500 ILE E 46 -65.02 -103.95 REMARK 500 ASN E 70 -168.10 -165.66 REMARK 500 GLU E 79 -123.27 63.75 REMARK 500 ASP E 153 42.47 -82.74 REMARK 500 ASP E 185 34.07 -98.57 REMARK 500 GLN E 225 162.06 -49.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 1100 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 1101 DBREF 5XOT A 1 276 UNP P30685 1B35_HUMAN 25 300 DBREF 5XOT B 1 99 UNP P61769 B2MG_HUMAN 21 119 DBREF 5XOT C 1 9 PDB 5XOT 5XOT 1 9 DBREF 5XOT D 1 204 PDB 5XOT 5XOT 1 204 DBREF 5XOT E 3 244 PDB 5XOT 5XOT 3 244 SEQADV 5XOT ASP A 34 UNP P30685 VAL 58 ENGINEERED MUTATION SEQRES 1 A 276 GLY SER HIS SER MET ARG TYR PHE TYR THR ALA MET SER SEQRES 2 A 276 ARG PRO GLY ARG GLY GLU PRO ARG PHE ILE ALA VAL GLY SEQRES 3 A 276 TYR VAL ASP ASP THR GLN PHE ASP ARG PHE ASP SER ASP SEQRES 4 A 276 ALA ALA SER PRO ARG THR GLU PRO ARG ALA PRO TRP ILE SEQRES 5 A 276 GLU GLN GLU GLY PRO GLU TYR TRP ASP ARG ASN THR GLN SEQRES 6 A 276 ILE PHE LYS THR ASN THR GLN THR TYR ARG GLU SER LEU SEQRES 7 A 276 ARG ASN LEU ARG GLY TYR TYR ASN GLN SER GLU ALA GLY SEQRES 8 A 276 SER HIS ILE ILE GLN ARG MET TYR GLY CYS ASP LEU GLY SEQRES 9 A 276 PRO ASP GLY ARG LEU LEU ARG GLY HIS ASP GLN SER ALA SEQRES 10 A 276 TYR ASP GLY LYS ASP TYR ILE ALA LEU ASN GLU ASP LEU SEQRES 11 A 276 SER SER TRP THR ALA ALA ASP THR ALA ALA GLN ILE THR SEQRES 12 A 276 GLN ARG LYS TRP GLU ALA ALA ARG VAL ALA GLU GLN LEU SEQRES 13 A 276 ARG ALA TYR LEU GLU GLY LEU CYS VAL GLU TRP LEU ARG SEQRES 14 A 276 ARG TYR LEU GLU ASN GLY LYS GLU THR LEU GLN ARG ALA SEQRES 15 A 276 ASP PRO PRO LYS THR HIS VAL THR HIS HIS PRO VAL SER SEQRES 16 A 276 ASP HIS GLU ALA THR LEU ARG CYS TRP ALA LEU GLY PHE SEQRES 17 A 276 TYR PRO ALA GLU ILE THR LEU THR TRP GLN ARG ASP GLY SEQRES 18 A 276 GLU ASP GLN THR GLN ASP THR GLU LEU VAL GLU THR ARG SEQRES 19 A 276 PRO ALA GLY ASP ARG THR PHE GLN LYS TRP ALA ALA VAL SEQRES 20 A 276 VAL VAL PRO SER GLY GLU GLU GLN ARG TYR THR CYS HIS SEQRES 21 A 276 VAL GLN HIS GLU GLY LEU PRO LYS PRO LEU THR LEU ARG SEQRES 22 A 276 TRP GLU PRO SEQRES 1 B 99 ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG HIS SEQRES 2 B 99 PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS TYR SEQRES 3 B 99 VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP LEU SEQRES 4 B 99 LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SER SEQRES 5 B 99 ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU LEU SEQRES 6 B 99 TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU TYR SEQRES 7 B 99 ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO LYS SEQRES 8 B 99 ILE VAL LYS TRP ASP ARG ASP MET SEQRES 1 C 9 ILE PRO LEU THR GLU GLU ALA GLU LEU SEQRES 1 D 204 UNK GLN LYS VAL THR GLN ALA GLN SER SER VAL SER MET SEQRES 2 D 204 PRO VAL ARG LYS ALA VAL THR LEU ASN CYS LEU TYR GLU SEQRES 3 D 204 THR SER TRP TRP SER TYR TYR ILE PHE TRP TYR LYS GLN SEQRES 4 D 204 LEU PRO SER LYS GLU MET ILE PHE LEU ILE ARG GLN GLY SEQRES 5 D 204 SER ASP GLU GLN ASN ALA LYS SER GLY ARG TYR SER VAL SEQRES 6 D 204 ASN PHE LYS LYS ALA ALA LYS SER VAL ALA LEU THR ILE SEQRES 7 D 204 SER ALA LEU GLN LEU GLU ASP SER ALA LYS TYR PHE CYS SEQRES 8 D 204 ALA LEU GLY GLU GLY GLY ALA GLN LYS LEU VAL PHE GLY SEQRES 9 D 204 GLN GLY THR ARG LEU THR ILE ASN PRO ASN ILE GLN ASN SEQRES 10 D 204 PRO ASP PRO ALA VAL TYR GLN LEU ARG ASP SER LYS SER SEQRES 11 D 204 SER ASP LYS SER VAL CYS LEU PHE THR ASP PHE ASP SER SEQRES 12 D 204 GLN THR ASN VAL SER GLN SER LYS ASP SER ASP VAL TYR SEQRES 13 D 204 ILE THR ASP LYS CYS VAL LEU ASP MET ARG SER MET ASP SEQRES 14 D 204 PHE LYS SER ASN SER ALA VAL ALA TRP SER ASN LYS SER SEQRES 15 D 204 ASP PHE ALA CYS ALA ASN ALA PHE ASN ASN SER ILE ILE SEQRES 16 D 204 PRO GLU ASP THR PHE PHE PRO SER PRO SEQRES 1 E 242 GLY VAL THR GLN THR PRO LYS PHE GLN VAL LEU LYS THR SEQRES 2 E 242 GLY GLN SER MET THR LEU GLN CYS ALA GLN ASP MET ASN SEQRES 3 E 242 HIS ASN SER MET TYR TRP TYR ARG GLN ASP PRO GLY MET SEQRES 4 E 242 GLY LEU ARG LEU ILE TYR TYR SER ALA SER GLU GLY THR SEQRES 5 E 242 THR ASP LYS GLY GLU VAL PRO ASN GLY TYR ASN VAL SER SEQRES 6 E 242 ARG LEU ASN LYS ARG GLU PHE SER LEU ARG LEU GLU SER SEQRES 7 E 242 ALA ALA PRO SER GLN THR SER VAL TYR PHE CYS ALA SER SEQRES 8 E 242 ARG THR ARG GLY GLY THR LEU ILE GLU GLN TYR PHE GLY SEQRES 9 E 242 PRO GLY THR ARG LEU THR VAL THR GLU ASP LEU ASN LYS SEQRES 10 E 242 VAL PHE PRO PRO GLU VAL ALA VAL PHE GLU PRO SER GLU SEQRES 11 E 242 ALA GLU ILE SER HIS THR GLN LYS ALA THR LEU VAL CYS SEQRES 12 E 242 LEU ALA THR GLY PHE PHE PRO ASP HIS VAL GLU LEU SER SEQRES 13 E 242 TRP TRP VAL ASN GLY LYS GLU VAL HIS SER GLY VAL CYS SEQRES 14 E 242 THR ASP PRO GLN PRO LEU LYS GLU GLN PRO ALA LEU ASN SEQRES 15 E 242 ASP SER ARG TYR ALA LEU SER SER ARG LEU ARG VAL SER SEQRES 16 E 242 ALA THR PHE TRP GLN ASN PRO ARG ASN HIS PHE ARG CYS SEQRES 17 E 242 GLN VAL GLN PHE TYR GLY LEU SER GLU ASN ASP GLU TRP SEQRES 18 E 242 THR GLN ASP ARG ALA LYS PRO VAL THR GLN ILE VAL SER SEQRES 19 E 242 ALA GLU ALA TRP GLY ARG ALA ASP HET GOL A 301 6 HET GOL B1100 6 HET GOL B1101 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 6 GOL 3(C3 H8 O3) FORMUL 9 HOH *33(H2 O) HELIX 1 AA1 ALA A 49 GLU A 55 5 7 HELIX 2 AA2 GLY A 56 ASN A 86 1 31 HELIX 3 AA3 ASP A 137 ARG A 151 1 15 HELIX 4 AA4 ARG A 151 GLY A 162 1 12 HELIX 5 AA5 GLY A 162 GLY A 175 1 14 HELIX 6 AA6 GLY A 175 GLN A 180 1 6 HELIX 7 AA7 THR A 225 THR A 228 5 4 HELIX 8 AA8 GLU A 253 GLN A 255 5 3 HELIX 9 AA9 ARG D 166 ASP D 169 5 4 HELIX 10 AB1 ALA D 185 ALA D 189 5 5 HELIX 11 AB2 ALA E 82 THR E 86 5 5 HELIX 12 AB3 ASP E 116 VAL E 120 5 5 HELIX 13 AB4 SER E 131 GLN E 139 1 9 HELIX 14 AB5 ALA E 198 GLN E 202 1 5 SHEET 1 AA1 8 GLU A 46 PRO A 47 0 SHEET 2 AA1 8 THR A 31 ASP A 37 -1 N ARG A 35 O GLU A 46 SHEET 3 AA1 8 ARG A 21 VAL A 28 -1 N GLY A 26 O PHE A 33 SHEET 4 AA1 8 HIS A 3 MET A 12 -1 N ARG A 6 O TYR A 27 SHEET 5 AA1 8 ILE A 94 LEU A 103 -1 O LEU A 103 N HIS A 3 SHEET 6 AA1 8 LEU A 109 TYR A 118 -1 O ALA A 117 N GLN A 96 SHEET 7 AA1 8 ASP A 122 LEU A 126 -1 O ILE A 124 N SER A 116 SHEET 8 AA1 8 TRP A 133 ALA A 135 -1 O THR A 134 N ALA A 125 SHEET 1 AA2 4 LYS A 186 PRO A 193 0 SHEET 2 AA2 4 GLU A 198 PHE A 208 -1 O THR A 200 N HIS A 192 SHEET 3 AA2 4 PHE A 241 PRO A 250 -1 O VAL A 249 N ALA A 199 SHEET 4 AA2 4 GLU A 229 LEU A 230 -1 N GLU A 229 O ALA A 246 SHEET 1 AA3 4 LYS A 186 PRO A 193 0 SHEET 2 AA3 4 GLU A 198 PHE A 208 -1 O THR A 200 N HIS A 192 SHEET 3 AA3 4 PHE A 241 PRO A 250 -1 O VAL A 249 N ALA A 199 SHEET 4 AA3 4 ARG A 234 PRO A 235 -1 N ARG A 234 O GLN A 242 SHEET 1 AA4 4 GLU A 222 ASP A 223 0 SHEET 2 AA4 4 THR A 214 ARG A 219 -1 N ARG A 219 O GLU A 222 SHEET 3 AA4 4 TYR A 257 GLN A 262 -1 O THR A 258 N GLN A 218 SHEET 4 AA4 4 LEU A 270 LEU A 272 -1 O LEU A 272 N CYS A 259 SHEET 1 AA5 4 LYS B 6 SER B 11 0 SHEET 2 AA5 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 AA5 4 PHE B 62 PHE B 70 -1 O TYR B 66 N CYS B 25 SHEET 4 AA5 4 GLU B 50 HIS B 51 -1 N GLU B 50 O TYR B 67 SHEET 1 AA6 4 LYS B 6 SER B 11 0 SHEET 2 AA6 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 AA6 4 PHE B 62 PHE B 70 -1 O TYR B 66 N CYS B 25 SHEET 4 AA6 4 SER B 55 PHE B 56 -1 N SER B 55 O TYR B 63 SHEET 1 AA7 4 GLU B 44 ARG B 45 0 SHEET 2 AA7 4 GLU B 36 LYS B 41 -1 N LYS B 41 O GLU B 44 SHEET 3 AA7 4 TYR B 78 ASN B 83 -1 O ALA B 79 N LEU B 40 SHEET 4 AA7 4 LYS B 91 LYS B 94 -1 O LYS B 91 N VAL B 82 SHEET 1 AA8 2 VAL D 4 THR D 5 0 SHEET 2 AA8 2 LEU D 24 TYR D 25 -1 O LEU D 24 N THR D 5 SHEET 1 AA9 5 SER D 10 PRO D 14 0 SHEET 2 AA9 5 THR D 107 ASN D 112 1 O ARG D 108 N VAL D 11 SHEET 3 AA9 5 ALA D 87 GLU D 95 -1 N TYR D 89 O THR D 107 SHEET 4 AA9 5 TYR D 32 GLN D 39 -1 N PHE D 35 O ALA D 92 SHEET 5 AA9 5 MET D 45 GLY D 52 -1 O GLN D 51 N ILE D 34 SHEET 1 AB1 4 SER D 10 PRO D 14 0 SHEET 2 AB1 4 THR D 107 ASN D 112 1 O ARG D 108 N VAL D 11 SHEET 3 AB1 4 ALA D 87 GLU D 95 -1 N TYR D 89 O THR D 107 SHEET 4 AB1 4 VAL D 102 PHE D 103 -1 O VAL D 102 N LEU D 93 SHEET 1 AB2 4 VAL D 19 LEU D 21 0 SHEET 2 AB2 4 SER D 73 ILE D 78 -1 O LEU D 76 N LEU D 21 SHEET 3 AB2 4 TYR D 63 LYS D 68 -1 N LYS D 68 O SER D 73 SHEET 4 AB2 4 LYS D 59 SER D 60 -1 N SER D 60 O TYR D 63 SHEET 1 AB3 8 VAL D 155 ILE D 157 0 SHEET 2 AB3 8 PHE D 170 SER D 179 -1 O TRP D 178 N TYR D 156 SHEET 3 AB3 8 SER D 134 THR D 139 -1 N CYS D 136 O ALA D 177 SHEET 4 AB3 8 ALA D 121 ASP D 127 -1 N TYR D 123 O LEU D 137 SHEET 5 AB3 8 GLU E 124 GLU E 129 -1 O GLU E 129 N ARG D 126 SHEET 6 AB3 8 LYS E 140 PHE E 150 -1 O LEU E 146 N ALA E 126 SHEET 7 AB3 8 TYR E 188 SER E 197 -1 O VAL E 196 N ALA E 141 SHEET 8 AB3 8 VAL E 170 THR E 172 -1 N CYS E 171 O ARG E 193 SHEET 1 AB4 8 CYS D 161 MET D 165 0 SHEET 2 AB4 8 PHE D 170 SER D 179 -1 O PHE D 170 N MET D 165 SHEET 3 AB4 8 SER D 134 THR D 139 -1 N CYS D 136 O ALA D 177 SHEET 4 AB4 8 ALA D 121 ASP D 127 -1 N TYR D 123 O LEU D 137 SHEET 5 AB4 8 GLU E 124 GLU E 129 -1 O GLU E 129 N ARG D 126 SHEET 6 AB4 8 LYS E 140 PHE E 150 -1 O LEU E 146 N ALA E 126 SHEET 7 AB4 8 TYR E 188 SER E 197 -1 O VAL E 196 N ALA E 141 SHEET 8 AB4 8 LEU E 177 LYS E 178 -1 N LEU E 177 O ALA E 189 SHEET 1 AB5 4 VAL E 4 THR E 7 0 SHEET 2 AB5 4 THR E 20 GLN E 25 -1 O GLN E 22 N THR E 7 SHEET 3 AB5 4 SER E 75 ARG E 77 -1 O LEU E 76 N LEU E 21 SHEET 4 AB5 4 ASN E 65 SER E 67 -1 N ASN E 65 O ARG E 77 SHEET 1 AB6 6 PHE E 10 LYS E 14 0 SHEET 2 AB6 6 THR E 109 THR E 114 1 O THR E 114 N LEU E 13 SHEET 3 AB6 6 SER E 87 ARG E 94 -1 N SER E 87 O LEU E 111 SHEET 4 AB6 6 SER E 31 GLN E 37 -1 N TYR E 35 O PHE E 90 SHEET 5 AB6 6 LEU E 43 SER E 51 -1 O SER E 49 N MET E 32 SHEET 6 AB6 6 THR E 54 LYS E 57 -1 O ASP E 56 N TYR E 48 SHEET 1 AB7 4 PHE E 10 LYS E 14 0 SHEET 2 AB7 4 THR E 109 THR E 114 1 O THR E 114 N LEU E 13 SHEET 3 AB7 4 SER E 87 ARG E 94 -1 N SER E 87 O LEU E 111 SHEET 4 AB7 4 TYR E 104 PHE E 105 -1 O TYR E 104 N SER E 93 SHEET 1 AB8 4 LYS E 164 VAL E 166 0 SHEET 2 AB8 4 VAL E 155 VAL E 161 -1 N VAL E 161 O LYS E 164 SHEET 3 AB8 4 HIS E 207 PHE E 214 -1 O ARG E 209 N TRP E 160 SHEET 4 AB8 4 GLN E 233 TRP E 240 -1 O GLN E 233 N PHE E 214 SSBOND 1 CYS A 101 CYS A 164 1555 1555 2.04 SSBOND 2 CYS A 203 CYS A 259 1555 1555 2.03 SSBOND 3 CYS B 25 CYS B 80 1555 1555 2.02 SSBOND 4 CYS D 23 CYS D 91 1555 1555 2.03 SSBOND 5 CYS D 136 CYS D 186 1555 1555 2.03 SSBOND 6 CYS D 161 CYS E 171 1555 1555 2.03 SSBOND 7 CYS E 23 CYS E 91 1555 1555 2.03 SSBOND 8 CYS E 145 CYS E 210 1555 1555 2.03 CISPEP 1 TYR A 209 PRO A 210 0 1.31 CISPEP 2 HIS B 31 PRO B 32 0 1.46 CISPEP 3 GLY D 96 GLY D 97 0 1.01 CISPEP 4 SER D 203 PRO D 204 0 -1.61 CISPEP 5 THR E 7 PRO E 8 0 -0.94 CISPEP 6 LYS E 57 GLY E 58 0 0.04 CISPEP 7 PHE E 151 PRO E 152 0 3.70 SITE 1 AC1 3 ARG A 6 PHE A 8 ASP A 30 SITE 1 AC2 2 SER B 33 ASP B 34 SITE 1 AC3 7 TRP A 204 ARG A 234 TYR B 10 SER B 11 SITE 2 AC3 7 HIS B 13 PRO B 14 MET B 99 CRYST1 195.687 59.596 92.808 90.00 105.98 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005110 0.000000 0.001463 0.00000 SCALE2 0.000000 0.016780 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011208 0.00000