HEADER HYDROLASE 31-MAY-17 5XOY TITLE CRYSTAL STRUCTURE OF LYSK FROM THERMUS THERMOPHILUS IN COMPLEX WITH TITLE 2 LYSINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: [LYSW]-LYSINE HYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.5.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS (STRAIN HB27 / ATCC BAA- SOURCE 3 163 / DSM 7039); SOURCE 4 ORGANISM_TAXID: 262724; SOURCE 5 STRAIN: HB27 / ATCC BAA-163 / DSM 7039; SOURCE 6 GENE: LYSK, TT_C1396; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 RIL CODON-PLUS (DE3) KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.TOMITA,S.FUJITA,F.HASEBE,S.-H.CHO,A.YOSHIDA,T.KUZUYAMA,M.NISHIYAMA REVDAT 2 22-NOV-23 5XOY 1 REMARK REVDAT 1 13-SEP-17 5XOY 0 SPRSDE 13-SEP-17 5XOY 3X3E JRNL AUTH S.FUJITA,S.-H.CHO,A.YOSHIDA,F.HASEBE,T.TOMITA,T.KUZUYAMA, JRNL AUTH 2 M.NISHIYAMA JRNL TITL CRYSTAL STRUCTURE OF LYSK, AN ENZYME CATALYZING THE LAST JRNL TITL 2 STEP OF LYSINE BIOSYNTHESIS IN THERMUS THERMOPHILUS, IN JRNL TITL 3 COMPLEX WITH LYSINE: INSIGHT INTO THE MECHANISM FOR JRNL TITL 4 RECOGNITION OF THE AMINO-GROUP CARRIER PROTEIN, LYSW JRNL REF BIOCHEM. BIOPHYS. RES. V. 491 409 2017 JRNL REF 2 COMMUN. JRNL REFN ESSN 1090-2104 JRNL PMID 28720495 JRNL DOI 10.1016/J.BBRC.2017.07.088 REMARK 2 REMARK 2 RESOLUTION. 2.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 41817 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2224 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.39 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.45 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2848 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.2630 REMARK 3 BIN FREE R VALUE SET COUNT : 142 REMARK 3 BIN FREE R VALUE : 0.2810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5366 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 166 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.246 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.204 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.155 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.723 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5557 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5378 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7540 ; 1.603 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12380 ; 0.856 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 691 ; 6.658 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 251 ;34.583 ;22.709 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 901 ;19.174 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 51 ;21.921 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 808 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6257 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1264 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2767 ; 3.487 ; 4.785 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2766 ; 3.482 ; 4.784 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3451 ; 5.046 ; 7.162 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3452 ; 5.045 ; 7.164 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2790 ; 4.350 ; 5.408 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2783 ; 4.332 ; 5.406 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4076 ; 6.684 ; 7.881 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6130 ; 8.698 ;38.341 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6123 ; 8.695 ;38.336 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5XOY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1300003928. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NE3A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44181 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.390 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.39 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.51700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4Q7A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL (PH 8.5), 1.5M AMMONIUM REMARK 280 SULFATE, 12 % GLYCEROL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 66.38900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.96350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 66.38900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.96350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 51370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -120.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -69.92700 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 ALA A -10 REMARK 465 SER A -9 REMARK 465 TRP A -8 REMARK 465 SER A -7 REMARK 465 HIS A -6 REMARK 465 PRO A -5 REMARK 465 GLN A -4 REMARK 465 PHE A -3 REMARK 465 GLU A -2 REMARK 465 LYS A -1 REMARK 465 GLY A 0 REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 465 SER A 4 REMARK 465 ALA A 5 REMARK 465 PHE A 174 REMARK 465 HIS A 175 REMARK 465 SER A 176 REMARK 465 ALA A 177 REMARK 465 HIS A 178 REMARK 465 HIS A 179 REMARK 465 ALA A 223 REMARK 465 GLU A 224 REMARK 465 LEU A 225 REMARK 465 ALA A 356 REMARK 465 GLY A 357 REMARK 465 GLU A 358 REMARK 465 LYS A 359 REMARK 465 GLU A 360 REMARK 465 GLY A 361 REMARK 465 MET B -11 REMARK 465 ALA B -10 REMARK 465 SER B -9 REMARK 465 TRP B -8 REMARK 465 SER B -7 REMARK 465 HIS B -6 REMARK 465 PRO B -5 REMARK 465 GLN B -4 REMARK 465 PHE B -3 REMARK 465 GLU B -2 REMARK 465 LYS B -1 REMARK 465 GLY B 0 REMARK 465 GLY B 1 REMARK 465 SER B 2 REMARK 465 LYS B 3 REMARK 465 SER B 4 REMARK 465 ALA B 5 REMARK 465 HIS B 355 REMARK 465 ALA B 356 REMARK 465 GLY B 357 REMARK 465 GLU B 358 REMARK 465 LYS B 359 REMARK 465 GLU B 360 REMARK 465 GLY B 361 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 265 O2 SO4 A 402 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 92 25.82 -150.88 REMARK 500 LYS A 171 -153.62 -135.97 REMARK 500 SER B 20 53.15 -148.27 REMARK 500 ALA B 92 42.31 -149.16 REMARK 500 SER B 107 152.08 -47.94 REMARK 500 SER B 176 -6.21 -59.87 REMARK 500 GLU B 224 -79.43 -131.22 REMARK 500 ASP B 325 127.63 -36.72 REMARK 500 GLN B 353 5.99 -69.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LYS A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 402 DBREF 5XOY A 2 361 UNP Q8VUS5 LYSK_THET2 2 361 DBREF 5XOY B 2 361 UNP Q8VUS5 LYSK_THET2 2 361 SEQADV 5XOY MET A -11 UNP Q8VUS5 EXPRESSION TAG SEQADV 5XOY ALA A -10 UNP Q8VUS5 EXPRESSION TAG SEQADV 5XOY SER A -9 UNP Q8VUS5 EXPRESSION TAG SEQADV 5XOY TRP A -8 UNP Q8VUS5 EXPRESSION TAG SEQADV 5XOY SER A -7 UNP Q8VUS5 EXPRESSION TAG SEQADV 5XOY HIS A -6 UNP Q8VUS5 EXPRESSION TAG SEQADV 5XOY PRO A -5 UNP Q8VUS5 EXPRESSION TAG SEQADV 5XOY GLN A -4 UNP Q8VUS5 EXPRESSION TAG SEQADV 5XOY PHE A -3 UNP Q8VUS5 EXPRESSION TAG SEQADV 5XOY GLU A -2 UNP Q8VUS5 EXPRESSION TAG SEQADV 5XOY LYS A -1 UNP Q8VUS5 EXPRESSION TAG SEQADV 5XOY GLY A 0 UNP Q8VUS5 EXPRESSION TAG SEQADV 5XOY GLY A 1 UNP Q8VUS5 EXPRESSION TAG SEQADV 5XOY MET B -11 UNP Q8VUS5 EXPRESSION TAG SEQADV 5XOY ALA B -10 UNP Q8VUS5 EXPRESSION TAG SEQADV 5XOY SER B -9 UNP Q8VUS5 EXPRESSION TAG SEQADV 5XOY TRP B -8 UNP Q8VUS5 EXPRESSION TAG SEQADV 5XOY SER B -7 UNP Q8VUS5 EXPRESSION TAG SEQADV 5XOY HIS B -6 UNP Q8VUS5 EXPRESSION TAG SEQADV 5XOY PRO B -5 UNP Q8VUS5 EXPRESSION TAG SEQADV 5XOY GLN B -4 UNP Q8VUS5 EXPRESSION TAG SEQADV 5XOY PHE B -3 UNP Q8VUS5 EXPRESSION TAG SEQADV 5XOY GLU B -2 UNP Q8VUS5 EXPRESSION TAG SEQADV 5XOY LYS B -1 UNP Q8VUS5 EXPRESSION TAG SEQADV 5XOY GLY B 0 UNP Q8VUS5 EXPRESSION TAG SEQADV 5XOY GLY B 1 UNP Q8VUS5 EXPRESSION TAG SEQRES 1 A 373 MET ALA SER TRP SER HIS PRO GLN PHE GLU LYS GLY GLY SEQRES 2 A 373 SER LYS SER ALA LEU ASP PRO VAL GLU PHE LEU LYS GLY SEQRES 3 A 373 ALA LEU GLU ILE PRO SER PRO SER GLY LYS GLU ARG LEU SEQRES 4 A 373 VAL ALA GLU TYR LEU ALA GLU GLY MET GLN LYS LEU GLY SEQRES 5 A 373 LEU LYS GLY PHE VAL ASP GLU ALA ASP ASN ALA ARG GLY SEQRES 6 A 373 GLN VAL GLY GLU GLY PRO VAL GLN VAL VAL LEU LEU GLY SEQRES 7 A 373 HIS ILE ASP THR VAL PRO GLY GLN ILE PRO VAL ARG LEU SEQRES 8 A 373 GLU GLY GLY ARG LEU PHE GLY ARG GLY ALA VAL ASP ALA SEQRES 9 A 373 LYS GLY PRO PHE VAL ALA MET ILE PHE ALA ALA ALA GLY SEQRES 10 A 373 LEU SER GLU GLU ALA ARG LYS ARG LEU THR VAL HIS LEU SEQRES 11 A 373 VAL GLY ALA THR GLU GLU GLU ALA PRO SER SER LYS GLY SEQRES 12 A 373 ALA ARG PHE VAL ALA PRO ARG LEU LYS PRO HIS TYR ALA SEQRES 13 A 373 VAL ILE GLY GLU PRO SER GLY TRP GLU GLY ILE THR LEU SEQRES 14 A 373 GLY TYR LYS GLY ARG LEU LEU VAL LYS ALA ARG ARG GLU SEQRES 15 A 373 LYS ASP HIS PHE HIS SER ALA HIS HIS GLU PRO ASN ALA SEQRES 16 A 373 ALA GLU GLU LEU ILE SER TYR PHE VAL ALA ILE LYS ALA SEQRES 17 A 373 TRP ALA GLU ALA MET ASN VAL GLY GLN ARG PRO PHE ASP SEQRES 18 A 373 GLN VAL GLN TYR THR LEU ARG ASP PHE ARG VAL HIS PRO SEQRES 19 A 373 ALA GLU LEU ARG GLN VAL ALA GLU MET PHE PHE ASP LEU SEQRES 20 A 373 ARG LEU PRO PRO ARG LEU PRO PRO GLU GLU ALA ILE ARG SEQRES 21 A 373 HIS LEU THR ALA TYR ALA PRO PRO THR ILE GLU LEU GLU SEQRES 22 A 373 PHE PHE GLY ARG GLU VAL PRO TYR GLN GLY PRO LYS ASP SEQRES 23 A 373 THR PRO LEU THR ARG ALA PHE ARG GLN ALA ILE ARG LYS SEQRES 24 A 373 ALA GLY GLY ARG PRO VAL PHE LYS LEU LYS THR GLY THR SEQRES 25 A 373 SER ASP MET ASN VAL LEU ALA PRO HIS TRP PRO VAL PRO SEQRES 26 A 373 MET VAL ALA TYR GLY PRO GLY ASP SER THR LEU ASP HIS SEQRES 27 A 373 THR PRO TYR GLU HIS VAL GLU VAL ALA GLU PHE LEU LYS SEQRES 28 A 373 GLY ILE GLU VAL LEU ARG GLY ALA LEU GLU ALA LEU ALA SEQRES 29 A 373 GLN THR HIS ALA GLY GLU LYS GLU GLY SEQRES 1 B 373 MET ALA SER TRP SER HIS PRO GLN PHE GLU LYS GLY GLY SEQRES 2 B 373 SER LYS SER ALA LEU ASP PRO VAL GLU PHE LEU LYS GLY SEQRES 3 B 373 ALA LEU GLU ILE PRO SER PRO SER GLY LYS GLU ARG LEU SEQRES 4 B 373 VAL ALA GLU TYR LEU ALA GLU GLY MET GLN LYS LEU GLY SEQRES 5 B 373 LEU LYS GLY PHE VAL ASP GLU ALA ASP ASN ALA ARG GLY SEQRES 6 B 373 GLN VAL GLY GLU GLY PRO VAL GLN VAL VAL LEU LEU GLY SEQRES 7 B 373 HIS ILE ASP THR VAL PRO GLY GLN ILE PRO VAL ARG LEU SEQRES 8 B 373 GLU GLY GLY ARG LEU PHE GLY ARG GLY ALA VAL ASP ALA SEQRES 9 B 373 LYS GLY PRO PHE VAL ALA MET ILE PHE ALA ALA ALA GLY SEQRES 10 B 373 LEU SER GLU GLU ALA ARG LYS ARG LEU THR VAL HIS LEU SEQRES 11 B 373 VAL GLY ALA THR GLU GLU GLU ALA PRO SER SER LYS GLY SEQRES 12 B 373 ALA ARG PHE VAL ALA PRO ARG LEU LYS PRO HIS TYR ALA SEQRES 13 B 373 VAL ILE GLY GLU PRO SER GLY TRP GLU GLY ILE THR LEU SEQRES 14 B 373 GLY TYR LYS GLY ARG LEU LEU VAL LYS ALA ARG ARG GLU SEQRES 15 B 373 LYS ASP HIS PHE HIS SER ALA HIS HIS GLU PRO ASN ALA SEQRES 16 B 373 ALA GLU GLU LEU ILE SER TYR PHE VAL ALA ILE LYS ALA SEQRES 17 B 373 TRP ALA GLU ALA MET ASN VAL GLY GLN ARG PRO PHE ASP SEQRES 18 B 373 GLN VAL GLN TYR THR LEU ARG ASP PHE ARG VAL HIS PRO SEQRES 19 B 373 ALA GLU LEU ARG GLN VAL ALA GLU MET PHE PHE ASP LEU SEQRES 20 B 373 ARG LEU PRO PRO ARG LEU PRO PRO GLU GLU ALA ILE ARG SEQRES 21 B 373 HIS LEU THR ALA TYR ALA PRO PRO THR ILE GLU LEU GLU SEQRES 22 B 373 PHE PHE GLY ARG GLU VAL PRO TYR GLN GLY PRO LYS ASP SEQRES 23 B 373 THR PRO LEU THR ARG ALA PHE ARG GLN ALA ILE ARG LYS SEQRES 24 B 373 ALA GLY GLY ARG PRO VAL PHE LYS LEU LYS THR GLY THR SEQRES 25 B 373 SER ASP MET ASN VAL LEU ALA PRO HIS TRP PRO VAL PRO SEQRES 26 B 373 MET VAL ALA TYR GLY PRO GLY ASP SER THR LEU ASP HIS SEQRES 27 B 373 THR PRO TYR GLU HIS VAL GLU VAL ALA GLU PHE LEU LYS SEQRES 28 B 373 GLY ILE GLU VAL LEU ARG GLY ALA LEU GLU ALA LEU ALA SEQRES 29 B 373 GLN THR HIS ALA GLY GLU LYS GLU GLY HET LYS A 401 10 HET SO4 A 402 5 HET SO4 B 401 5 HET SO4 B 402 5 HETNAM LYS LYSINE HETNAM SO4 SULFATE ION FORMUL 3 LYS C6 H15 N2 O2 1+ FORMUL 4 SO4 3(O4 S 2-) FORMUL 7 HOH *166(H2 O) HELIX 1 AA1 ASP A 7 GLU A 17 1 11 HELIX 2 AA2 GLU A 25 LEU A 39 1 15 HELIX 3 AA3 ALA A 92 GLY A 105 1 14 HELIX 4 AA4 SER A 107 ARG A 113 1 7 HELIX 5 AA5 SER A 129 ALA A 136 1 8 HELIX 6 AA6 PRO A 137 LEU A 139 5 3 HELIX 7 AA7 ASN A 182 VAL A 203 1 22 HELIX 8 AA8 ARG A 206 GLN A 210 5 5 HELIX 9 AA9 PRO A 242 TYR A 253 1 12 HELIX 10 AB1 THR A 275 ALA A 288 1 14 HELIX 11 AB2 SER A 301 ALA A 307 1 7 HELIX 12 AB3 ASP A 321 ASP A 325 5 5 HELIX 13 AB4 VAL A 334 THR A 354 1 21 HELIX 14 AB5 ASP B 7 GLU B 17 1 11 HELIX 15 AB6 GLU B 25 LEU B 39 1 15 HELIX 16 AB7 ALA B 92 GLY B 105 1 14 HELIX 17 AB8 SER B 107 ARG B 113 1 7 HELIX 18 AB9 SER B 129 ALA B 136 1 8 HELIX 19 AC1 PRO B 137 LEU B 139 5 3 HELIX 20 AC2 ASN B 182 ASN B 202 1 21 HELIX 21 AC3 ARG B 206 GLN B 210 5 5 HELIX 22 AC4 PRO B 242 TYR B 253 1 12 HELIX 23 AC5 THR B 275 ALA B 288 1 14 HELIX 24 AC6 SER B 301 ALA B 307 1 7 HELIX 25 AC7 ASP B 321 ASP B 325 5 5 HELIX 26 AC8 VAL B 334 GLN B 353 1 20 SHEET 1 AA1 6 PHE A 44 VAL A 45 0 SHEET 2 AA1 6 ALA A 51 GLY A 56 -1 O ARG A 52 N PHE A 44 SHEET 3 AA1 6 LEU A 114 ALA A 121 -1 O VAL A 116 N VAL A 55 SHEET 4 AA1 6 VAL A 60 HIS A 67 1 N GLY A 66 O VAL A 119 SHEET 5 AA1 6 TYR A 143 GLY A 147 1 O VAL A 145 N LEU A 65 SHEET 6 AA1 6 MET A 314 TYR A 317 1 O TYR A 317 N ILE A 146 SHEET 1 AA2 3 ARG A 78 GLU A 80 0 SHEET 2 AA2 3 ARG A 83 PHE A 85 -1 O PHE A 85 N ARG A 78 SHEET 3 AA2 3 HIS A 331 GLU A 333 -1 O VAL A 332 N LEU A 84 SHEET 1 AA3 3 TYR A 269 GLN A 270 0 SHEET 2 AA3 3 GLY A 154 TYR A 159 -1 N TYR A 159 O TYR A 269 SHEET 3 AA3 3 VAL A 293 LYS A 297 1 O LYS A 297 N GLY A 158 SHEET 1 AA4 4 GLN A 212 HIS A 221 0 SHEET 2 AA4 4 VAL A 228 LEU A 237 -1 O GLU A 230 N ARG A 219 SHEET 3 AA4 4 GLY A 161 GLU A 170 -1 N LEU A 163 O LEU A 235 SHEET 4 AA4 4 GLU A 259 GLU A 266 -1 O PHE A 263 N LEU A 164 SHEET 1 AA5 8 PHE B 44 VAL B 45 0 SHEET 2 AA5 8 ALA B 51 GLY B 56 -1 O ARG B 52 N PHE B 44 SHEET 3 AA5 8 LEU B 114 ALA B 121 -1 O GLY B 120 N ALA B 51 SHEET 4 AA5 8 VAL B 60 HIS B 67 1 N LEU B 64 O HIS B 117 SHEET 5 AA5 8 TYR B 143 GLY B 147 1 O GLY B 147 N LEU B 65 SHEET 6 AA5 8 MET B 314 GLY B 318 1 O TYR B 317 N ILE B 146 SHEET 7 AA5 8 GLY B 151 TYR B 159 -1 N THR B 156 O ALA B 316 SHEET 8 AA5 8 TYR B 269 GLN B 270 -1 O TYR B 269 N TYR B 159 SHEET 1 AA6 8 PHE B 44 VAL B 45 0 SHEET 2 AA6 8 ALA B 51 GLY B 56 -1 O ARG B 52 N PHE B 44 SHEET 3 AA6 8 LEU B 114 ALA B 121 -1 O GLY B 120 N ALA B 51 SHEET 4 AA6 8 VAL B 60 HIS B 67 1 N LEU B 64 O HIS B 117 SHEET 5 AA6 8 TYR B 143 GLY B 147 1 O GLY B 147 N LEU B 65 SHEET 6 AA6 8 MET B 314 GLY B 318 1 O TYR B 317 N ILE B 146 SHEET 7 AA6 8 GLY B 151 TYR B 159 -1 N THR B 156 O ALA B 316 SHEET 8 AA6 8 VAL B 293 LYS B 297 1 O LYS B 295 N LEU B 157 SHEET 1 AA7 3 ARG B 78 GLU B 80 0 SHEET 2 AA7 3 ARG B 83 PHE B 85 -1 O PHE B 85 N ARG B 78 SHEET 3 AA7 3 HIS B 331 GLU B 333 -1 O VAL B 332 N LEU B 84 SHEET 1 AA8 4 GLN B 212 VAL B 220 0 SHEET 2 AA8 4 ARG B 226 LEU B 237 -1 O PHE B 232 N ASP B 217 SHEET 3 AA8 4 GLY B 161 ASP B 172 -1 N LYS B 171 O GLN B 227 SHEET 4 AA8 4 GLU B 259 GLU B 266 -1 O PHE B 263 N LEU B 164 CISPEP 1 ASP A 91 ALA A 92 0 0.53 CISPEP 2 ASP B 91 ALA B 92 0 -5.54 SITE 1 AC1 8 GLU A 124 GLU A 125 ALA A 126 SER A 129 SITE 2 AC1 8 ARG A 162 ARG A 236 THR A 300 HIS B 175 SITE 1 AC2 3 PHE A 263 GLY A 264 ARG A 265 SITE 1 AC3 4 HIS B 221 GLU B 224 LEU B 225 ARG B 226 SITE 1 AC4 3 PHE B 263 GLY B 264 ARG B 265 CRYST1 132.778 69.927 118.094 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007531 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014301 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008468 0.00000