HEADER TRANSFERASE 01-JUN-17 5XP7 TITLE C-SRC IN COMPLEX WITH ATP-CHCL COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTO-ONCOGENE TYROSINE-PROTEIN KINASE SRC; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 251-533; COMPND 5 SYNONYM: PROTO-ONCOGENE C-SRC,PP60C-SRC,P60-SRC; COMPND 6 EC: 2.7.10.2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 GENE: SRC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: K-12 KEYWDS KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.GUO,S.DAI,Y.DUAN,L.CHEN,Y.CHEN REVDAT 3 27-MAR-24 5XP7 1 LINK REVDAT 2 20-FEB-19 5XP7 1 JRNL REVDAT 1 06-SEP-17 5XP7 0 JRNL AUTH F.NI,A.KUNG,Y.DUAN,V.SHAH,C.D.AMADOR,M.GUO,X.FAN,L.CHEN, JRNL AUTH 2 Y.CHEN,C.E.MCKENNA,C.ZHANG JRNL TITL REMARKABLY STEREOSPECIFIC UTILIZATION OF ATP ALPHA , JRNL TITL 2 BETA-HALOMETHYLENE ANALOGUES BY PROTEIN KINASES. JRNL REF J. AM. CHEM. SOC. V. 139 7701 2017 JRNL REFN ESSN 1520-5126 JRNL PMID 28535041 JRNL DOI 10.1021/JACS.7B03266 REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 48676 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.140 REMARK 3 FREE R VALUE TEST SET COUNT : 2013 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.5574 - 4.8458 0.97 3362 143 0.1538 0.1652 REMARK 3 2 4.8458 - 3.8476 0.96 3286 140 0.1356 0.1583 REMARK 3 3 3.8476 - 3.3616 0.98 3393 147 0.1547 0.1759 REMARK 3 4 3.3616 - 3.0544 0.98 3363 144 0.1749 0.2130 REMARK 3 5 3.0544 - 2.8356 0.98 3401 149 0.1804 0.2306 REMARK 3 6 2.8356 - 2.6685 0.98 3360 146 0.1775 0.2097 REMARK 3 7 2.6685 - 2.5349 0.98 3410 150 0.1772 0.2176 REMARK 3 8 2.5349 - 2.4245 0.98 3390 144 0.1807 0.2073 REMARK 3 9 2.4245 - 2.3312 0.97 3328 140 0.1863 0.2239 REMARK 3 10 2.3312 - 2.2508 0.98 3375 151 0.1989 0.2920 REMARK 3 11 2.2508 - 2.1804 0.97 3357 143 0.2002 0.2363 REMARK 3 12 2.1804 - 2.1181 0.97 3351 140 0.1979 0.2328 REMARK 3 13 2.1181 - 2.0624 0.97 3379 145 0.2117 0.2499 REMARK 3 14 2.0624 - 2.0120 0.85 2908 131 0.2330 0.2848 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.490 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4453 REMARK 3 ANGLE : 1.205 6042 REMARK 3 CHIRALITY : 0.056 650 REMARK 3 PLANARITY : 0.007 765 REMARK 3 DIHEDRAL : 13.610 1669 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 257 THROUGH 324 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.2939 10.9803 48.8370 REMARK 3 T TENSOR REMARK 3 T11: 0.7532 T22: 0.4547 REMARK 3 T33: 0.3217 T12: 0.0161 REMARK 3 T13: -0.0295 T23: -0.0157 REMARK 3 L TENSOR REMARK 3 L11: 0.1774 L22: 2.5902 REMARK 3 L33: 3.6262 L12: 0.0434 REMARK 3 L13: -0.0532 L23: 1.6232 REMARK 3 S TENSOR REMARK 3 S11: -0.0926 S12: -0.2095 S13: 0.1255 REMARK 3 S21: 0.9874 S22: 0.1351 S23: 0.0443 REMARK 3 S31: 0.2443 S32: -0.2219 S33: -0.0457 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 325 THROUGH 402 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.8658 5.1772 34.8207 REMARK 3 T TENSOR REMARK 3 T11: 0.2661 T22: 0.1999 REMARK 3 T33: 0.1913 T12: -0.0324 REMARK 3 T13: -0.0296 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 1.2428 L22: 3.4226 REMARK 3 L33: 2.5886 L12: -0.5686 REMARK 3 L13: -0.3166 L23: 1.5759 REMARK 3 S TENSOR REMARK 3 S11: -0.0547 S12: -0.1683 S13: 0.1072 REMARK 3 S21: 0.5489 S22: 0.0384 S23: -0.1745 REMARK 3 S31: 0.2490 S32: -0.0369 S33: -0.0075 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 403 THROUGH 440 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.0390 5.4798 31.6513 REMARK 3 T TENSOR REMARK 3 T11: 0.3800 T22: 0.3987 REMARK 3 T33: 0.4291 T12: -0.0404 REMARK 3 T13: 0.1236 T23: -0.0559 REMARK 3 L TENSOR REMARK 3 L11: 4.1444 L22: 1.7015 REMARK 3 L33: 3.3645 L12: 0.5078 REMARK 3 L13: 0.8568 L23: 0.0462 REMARK 3 S TENSOR REMARK 3 S11: 0.0111 S12: -0.1558 S13: -0.2093 REMARK 3 S21: 0.5160 S22: -0.1166 S23: 0.4663 REMARK 3 S31: 0.3374 S32: -0.6108 S33: 0.1867 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 441 THROUGH 533 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.8433 1.2493 18.4332 REMARK 3 T TENSOR REMARK 3 T11: 0.1780 T22: 0.2765 REMARK 3 T33: 0.2031 T12: -0.0475 REMARK 3 T13: -0.0158 T23: -0.0487 REMARK 3 L TENSOR REMARK 3 L11: 2.3071 L22: 4.2010 REMARK 3 L33: 2.1289 L12: -0.5694 REMARK 3 L13: -0.6223 L23: 0.1571 REMARK 3 S TENSOR REMARK 3 S11: 0.0238 S12: 0.3275 S13: -0.0229 REMARK 3 S21: -0.2047 S22: -0.2070 S23: 0.4045 REMARK 3 S31: -0.0280 S32: -0.3616 S33: 0.1153 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 256 THROUGH 286 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.5951 -18.4184 -8.0905 REMARK 3 T TENSOR REMARK 3 T11: 1.3091 T22: 0.6946 REMARK 3 T33: 0.5041 T12: 0.1296 REMARK 3 T13: -0.0244 T23: -0.0261 REMARK 3 L TENSOR REMARK 3 L11: 0.6024 L22: 5.1227 REMARK 3 L33: 2.9909 L12: -1.6796 REMARK 3 L13: -0.5553 L23: 1.7884 REMARK 3 S TENSOR REMARK 3 S11: 0.0428 S12: 0.1219 S13: 0.5902 REMARK 3 S21: -1.1164 S22: 0.4604 S23: -0.3950 REMARK 3 S31: -1.8144 S32: 0.0162 S33: -0.3508 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 287 THROUGH 316 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.7270 -21.3355 -5.5344 REMARK 3 T TENSOR REMARK 3 T11: 1.0424 T22: 0.6720 REMARK 3 T33: 0.4490 T12: -0.1188 REMARK 3 T13: -0.0272 T23: -0.0624 REMARK 3 L TENSOR REMARK 3 L11: 7.1361 L22: 6.2626 REMARK 3 L33: 3.4181 L12: -1.8262 REMARK 3 L13: -0.9520 L23: -0.1900 REMARK 3 S TENSOR REMARK 3 S11: 0.0051 S12: 0.5422 S13: 0.9410 REMARK 3 S21: -0.6820 S22: 0.1135 S23: -0.7452 REMARK 3 S31: -1.2118 S32: 0.3751 S33: -0.0754 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 317 THROUGH 402 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3653 -27.7108 7.2281 REMARK 3 T TENSOR REMARK 3 T11: 0.2649 T22: 0.2210 REMARK 3 T33: 0.2284 T12: 0.0444 REMARK 3 T13: -0.0533 T23: -0.0023 REMARK 3 L TENSOR REMARK 3 L11: 1.2145 L22: 3.7016 REMARK 3 L33: 2.4181 L12: 0.3721 REMARK 3 L13: -0.0811 L23: -0.0947 REMARK 3 S TENSOR REMARK 3 S11: -0.0190 S12: 0.1355 S13: 0.0982 REMARK 3 S21: -0.6899 S22: 0.0401 S23: 0.2516 REMARK 3 S31: -0.0596 S32: -0.0512 S33: -0.0409 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 403 THROUGH 440 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.1923 -26.5838 10.8540 REMARK 3 T TENSOR REMARK 3 T11: 0.2719 T22: 0.3517 REMARK 3 T33: 0.4213 T12: 0.0354 REMARK 3 T13: 0.0815 T23: 0.0141 REMARK 3 L TENSOR REMARK 3 L11: 4.2012 L22: 1.4987 REMARK 3 L33: 3.3932 L12: 1.0044 REMARK 3 L13: 2.2342 L23: -0.2791 REMARK 3 S TENSOR REMARK 3 S11: 0.0280 S12: 0.1718 S13: -0.3081 REMARK 3 S21: -0.4438 S22: -0.0052 S23: -0.5737 REMARK 3 S31: 0.0540 S32: 0.4550 S33: 0.0452 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 441 THROUGH 533 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.8644 -30.5778 24.4092 REMARK 3 T TENSOR REMARK 3 T11: 0.1673 T22: 0.2475 REMARK 3 T33: 0.1819 T12: 0.0343 REMARK 3 T13: -0.0204 T23: 0.0444 REMARK 3 L TENSOR REMARK 3 L11: 1.8934 L22: 4.3074 REMARK 3 L33: 1.2542 L12: 0.7294 REMARK 3 L13: -0.3141 L23: 0.4059 REMARK 3 S TENSOR REMARK 3 S11: 0.0708 S12: -0.2869 S13: -0.0632 REMARK 3 S21: 0.1934 S22: -0.1478 S23: -0.2718 REMARK 3 S31: 0.0226 S32: 0.1835 S33: 0.0621 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5XP7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1300003131. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48688 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 36.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4000, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 248 REMARK 465 HIS A 249 REMARK 465 MET A 250 REMARK 465 GLN A 251 REMARK 465 THR A 252 REMARK 465 GLN A 253 REMARK 465 GLY A 254 REMARK 465 LEU A 255 REMARK 465 ALA A 256 REMARK 465 GLU A 412 REMARK 465 ASP A 413 REMARK 465 ASN A 414 REMARK 465 GLU A 415 REMARK 465 TYR A 416 REMARK 465 THR A 417 REMARK 465 ALA A 418 REMARK 465 ARG A 419 REMARK 465 GLN A 420 REMARK 465 GLY A 421 REMARK 465 ALA A 422 REMARK 465 LYS A 423 REMARK 465 GLY B 248 REMARK 465 HIS B 249 REMARK 465 MET B 250 REMARK 465 GLN B 251 REMARK 465 THR B 252 REMARK 465 GLN B 253 REMARK 465 GLY B 254 REMARK 465 LEU B 255 REMARK 465 ASP B 413 REMARK 465 ASN B 414 REMARK 465 GLU B 415 REMARK 465 TYR B 416 REMARK 465 THR B 417 REMARK 465 ALA B 418 REMARK 465 ARG B 419 REMARK 465 GLN B 420 REMARK 465 GLY B 421 REMARK 465 ALA B 422 REMARK 465 LYS B 423 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 885 O HOH B 896 1.88 REMARK 500 NH1 ARG A 460 O HOH A 701 1.89 REMARK 500 O HOH A 833 O HOH A 837 1.89 REMARK 500 O HOH A 819 O HOH A 850 1.92 REMARK 500 O HOH B 734 O HOH B 770 1.97 REMARK 500 O PRO A 464 O HOH A 702 2.02 REMARK 500 O HOH B 863 O HOH B 864 2.03 REMARK 500 O HOH A 811 O HOH A 846 2.04 REMARK 500 NH1 ARG A 469 O HOH A 703 2.04 REMARK 500 O HOH B 744 O HOH B 867 2.05 REMARK 500 OH TYR A 436 O HOH A 704 2.06 REMARK 500 O HOH B 913 O HOH B 916 2.09 REMARK 500 O HOH A 772 O HOH A 831 2.10 REMARK 500 NE2 GLN A 497 O HOH A 705 2.11 REMARK 500 OE2 GLU A 510 O HOH A 706 2.12 REMARK 500 O LYS A 343 O HOH A 707 2.13 REMARK 500 O HOH B 898 O HOH B 918 2.14 REMARK 500 O HOH B 800 O HOH B 812 2.15 REMARK 500 NE2 GLN B 526 O HOH B 701 2.17 REMARK 500 OE1 GLU A 378 O HOH A 708 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 833 O HOH B 882 1565 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 460 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 270 -67.83 -107.27 REMARK 500 ARG A 385 -0.62 74.77 REMARK 500 ASP A 386 40.82 -147.64 REMARK 500 ASP A 404 72.22 52.80 REMARK 500 GLU B 270 -73.45 -110.30 REMARK 500 PRO B 299 126.59 -38.82 REMARK 500 ASP B 386 37.83 -145.91 REMARK 500 ASP B 404 76.48 50.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 404 OD2 REMARK 620 2 8C6 A 600 O1B 81.6 REMARK 620 3 8C6 A 600 O1A 86.8 74.8 REMARK 620 4 HOH A 835 O 147.0 81.5 115.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 391 OD1 REMARK 620 2 ASP B 404 OD1 86.7 REMARK 620 3 8C6 B 601 O2B 175.4 95.6 REMARK 620 4 8C6 B 601 O2A 87.9 97.7 87.9 REMARK 620 5 HOH B 775 O 91.6 88.7 92.4 173.5 REMARK 620 6 HOH B 856 O 79.1 165.2 98.9 86.0 87.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8C6 A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8C6 B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 603 DBREF 5XP7 A 251 533 UNP P00523 SRC_CHICK 251 533 DBREF 5XP7 B 251 533 UNP P00523 SRC_CHICK 251 533 SEQADV 5XP7 GLY A 248 UNP P00523 EXPRESSION TAG SEQADV 5XP7 HIS A 249 UNP P00523 EXPRESSION TAG SEQADV 5XP7 MET A 250 UNP P00523 EXPRESSION TAG SEQADV 5XP7 GLY B 248 UNP P00523 EXPRESSION TAG SEQADV 5XP7 HIS B 249 UNP P00523 EXPRESSION TAG SEQADV 5XP7 MET B 250 UNP P00523 EXPRESSION TAG SEQRES 1 A 286 GLY HIS MET GLN THR GLN GLY LEU ALA LYS ASP ALA TRP SEQRES 2 A 286 GLU ILE PRO ARG GLU SER LEU ARG LEU GLU VAL LYS LEU SEQRES 3 A 286 GLY GLN GLY CYS PHE GLY GLU VAL TRP MET GLY THR TRP SEQRES 4 A 286 ASN GLY THR THR ARG VAL ALA ILE LYS THR LEU LYS PRO SEQRES 5 A 286 GLY THR MET SER PRO GLU ALA PHE LEU GLN GLU ALA GLN SEQRES 6 A 286 VAL MET LYS LYS LEU ARG HIS GLU LYS LEU VAL GLN LEU SEQRES 7 A 286 TYR ALA VAL VAL SER GLU GLU PRO ILE TYR ILE VAL THR SEQRES 8 A 286 GLU TYR MET SER LYS GLY SER LEU LEU ASP PHE LEU LYS SEQRES 9 A 286 GLY GLU MET GLY LYS TYR LEU ARG LEU PRO GLN LEU VAL SEQRES 10 A 286 ASP MET ALA ALA GLN ILE ALA SER GLY MET ALA TYR VAL SEQRES 11 A 286 GLU ARG MET ASN TYR VAL HIS ARG ASP LEU ARG ALA ALA SEQRES 12 A 286 ASN ILE LEU VAL GLY GLU ASN LEU VAL CYS LYS VAL ALA SEQRES 13 A 286 ASP PHE GLY LEU ALA ARG LEU ILE GLU ASP ASN GLU TYR SEQRES 14 A 286 THR ALA ARG GLN GLY ALA LYS PHE PRO ILE LYS TRP THR SEQRES 15 A 286 ALA PRO GLU ALA ALA LEU TYR GLY ARG PHE THR ILE LYS SEQRES 16 A 286 SER ASP VAL TRP SER PHE GLY ILE LEU LEU THR GLU LEU SEQRES 17 A 286 THR THR LYS GLY ARG VAL PRO TYR PRO GLY MET VAL ASN SEQRES 18 A 286 ARG GLU VAL LEU ASP GLN VAL GLU ARG GLY TYR ARG MET SEQRES 19 A 286 PRO CYS PRO PRO GLU CYS PRO GLU SER LEU HIS ASP LEU SEQRES 20 A 286 MET CYS GLN CYS TRP ARG LYS ASP PRO GLU GLU ARG PRO SEQRES 21 A 286 THR PHE GLU TYR LEU GLN ALA PHE LEU GLU ASP TYR PHE SEQRES 22 A 286 THR SER THR GLU PRO GLN TYR GLN PRO GLY GLU ASN LEU SEQRES 1 B 286 GLY HIS MET GLN THR GLN GLY LEU ALA LYS ASP ALA TRP SEQRES 2 B 286 GLU ILE PRO ARG GLU SER LEU ARG LEU GLU VAL LYS LEU SEQRES 3 B 286 GLY GLN GLY CYS PHE GLY GLU VAL TRP MET GLY THR TRP SEQRES 4 B 286 ASN GLY THR THR ARG VAL ALA ILE LYS THR LEU LYS PRO SEQRES 5 B 286 GLY THR MET SER PRO GLU ALA PHE LEU GLN GLU ALA GLN SEQRES 6 B 286 VAL MET LYS LYS LEU ARG HIS GLU LYS LEU VAL GLN LEU SEQRES 7 B 286 TYR ALA VAL VAL SER GLU GLU PRO ILE TYR ILE VAL THR SEQRES 8 B 286 GLU TYR MET SER LYS GLY SER LEU LEU ASP PHE LEU LYS SEQRES 9 B 286 GLY GLU MET GLY LYS TYR LEU ARG LEU PRO GLN LEU VAL SEQRES 10 B 286 ASP MET ALA ALA GLN ILE ALA SER GLY MET ALA TYR VAL SEQRES 11 B 286 GLU ARG MET ASN TYR VAL HIS ARG ASP LEU ARG ALA ALA SEQRES 12 B 286 ASN ILE LEU VAL GLY GLU ASN LEU VAL CYS LYS VAL ALA SEQRES 13 B 286 ASP PHE GLY LEU ALA ARG LEU ILE GLU ASP ASN GLU TYR SEQRES 14 B 286 THR ALA ARG GLN GLY ALA LYS PHE PRO ILE LYS TRP THR SEQRES 15 B 286 ALA PRO GLU ALA ALA LEU TYR GLY ARG PHE THR ILE LYS SEQRES 16 B 286 SER ASP VAL TRP SER PHE GLY ILE LEU LEU THR GLU LEU SEQRES 17 B 286 THR THR LYS GLY ARG VAL PRO TYR PRO GLY MET VAL ASN SEQRES 18 B 286 ARG GLU VAL LEU ASP GLN VAL GLU ARG GLY TYR ARG MET SEQRES 19 B 286 PRO CYS PRO PRO GLU CYS PRO GLU SER LEU HIS ASP LEU SEQRES 20 B 286 MET CYS GLN CYS TRP ARG LYS ASP PRO GLU GLU ARG PRO SEQRES 21 B 286 THR PHE GLU TYR LEU GLN ALA PHE LEU GLU ASP TYR PHE SEQRES 22 B 286 THR SER THR GLU PRO GLN TYR GLN PRO GLY GLU ASN LEU HET 8C6 A 600 28 HET MG A 601 1 HET 8C6 B 601 28 HET MG B 602 1 HET GOL B 603 6 HETNAM 8C6 [(R)-[[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4- HETNAM 2 8C6 BIS(OXIDANYL)OXOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL]- HETNAM 3 8C6 CHLORANYL-METHYL]PHOSPHONIC ACID HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 8C6 2(C11 H16 CL N5 O9 P2) FORMUL 4 MG 2(MG 2+) FORMUL 7 GOL C3 H8 O3 FORMUL 8 HOH *399(H2 O) HELIX 1 AA1 PRO A 263 GLU A 265 5 3 HELIX 2 AA2 SER A 303 LEU A 308 1 6 HELIX 3 AA3 LEU A 308 LEU A 317 1 10 HELIX 4 AA4 LEU A 346 GLY A 352 1 7 HELIX 5 AA5 GLU A 353 LEU A 358 5 6 HELIX 6 AA6 ARG A 359 MET A 380 1 22 HELIX 7 AA7 ARG A 388 ALA A 390 5 3 HELIX 8 AA8 GLU A 396 LEU A 398 5 3 HELIX 9 AA9 ALA A 430 GLY A 437 1 8 HELIX 10 AB1 THR A 440 THR A 457 1 18 HELIX 11 AB2 VAL A 467 ARG A 477 1 11 HELIX 12 AB3 PRO A 488 TRP A 499 1 12 HELIX 13 AB4 ASP A 502 ARG A 506 5 5 HELIX 14 AB5 THR A 508 ASP A 518 1 11 HELIX 15 AB6 ASP A 518 THR A 523 1 6 HELIX 16 AB7 PRO B 263 GLU B 265 5 3 HELIX 17 AB8 SER B 303 LEU B 317 1 15 HELIX 18 AB9 LEU B 346 GLY B 352 1 7 HELIX 19 AC1 MET B 354 LEU B 358 5 5 HELIX 20 AC2 ARG B 359 MET B 380 1 22 HELIX 21 AC3 ARG B 388 ALA B 390 5 3 HELIX 22 AC4 GLU B 396 LEU B 398 5 3 HELIX 23 AC5 ALA B 430 GLY B 437 1 8 HELIX 24 AC6 THR B 440 THR B 457 1 18 HELIX 25 AC7 VAL B 467 ARG B 477 1 11 HELIX 26 AC8 PRO B 488 TRP B 499 1 12 HELIX 27 AC9 ASP B 502 ARG B 506 5 5 HELIX 28 AD1 THR B 508 ASP B 518 1 11 HELIX 29 AD2 ASP B 518 THR B 523 1 6 SHEET 1 AA1 5 LEU A 267 GLY A 274 0 SHEET 2 AA1 5 VAL A 281 TRP A 286 -1 O MET A 283 N VAL A 271 SHEET 3 AA1 5 THR A 290 THR A 296 -1 O ILE A 294 N TRP A 282 SHEET 4 AA1 5 TYR A 335 GLU A 339 -1 O ILE A 336 N LYS A 295 SHEET 5 AA1 5 LEU A 325 VAL A 329 -1 N TYR A 326 O VAL A 337 SHEET 1 AA2 3 GLY A 344 SER A 345 0 SHEET 2 AA2 3 ILE A 392 VAL A 394 -1 O VAL A 394 N GLY A 344 SHEET 3 AA2 3 CYS A 400 VAL A 402 -1 O LYS A 401 N LEU A 393 SHEET 1 AA3 2 TYR A 382 VAL A 383 0 SHEET 2 AA3 2 ARG A 409 LEU A 410 -1 O ARG A 409 N VAL A 383 SHEET 1 AA4 5 LEU B 267 GLN B 275 0 SHEET 2 AA4 5 GLY B 279 TRP B 286 -1 O MET B 283 N VAL B 271 SHEET 3 AA4 5 THR B 290 LEU B 297 -1 O ILE B 294 N TRP B 282 SHEET 4 AA4 5 TYR B 335 GLU B 339 -1 O ILE B 336 N LYS B 295 SHEET 5 AA4 5 LEU B 325 VAL B 329 -1 N TYR B 326 O VAL B 337 SHEET 1 AA5 3 GLY B 344 SER B 345 0 SHEET 2 AA5 3 ILE B 392 VAL B 394 -1 O VAL B 394 N GLY B 344 SHEET 3 AA5 3 CYS B 400 VAL B 402 -1 O LYS B 401 N LEU B 393 SHEET 1 AA6 2 TYR B 382 VAL B 383 0 SHEET 2 AA6 2 ARG B 409 LEU B 410 -1 O ARG B 409 N VAL B 383 LINK OD2 ASP A 404 MG MG A 601 1555 1555 2.64 LINK O1B 8C6 A 600 MG MG A 601 1555 1555 2.68 LINK O1A 8C6 A 600 MG MG A 601 1555 1555 2.11 LINK MG MG A 601 O HOH A 835 1555 1555 2.53 LINK OD1 ASN B 391 MG MG B 602 1555 1555 2.56 LINK OD1 ASP B 404 MG MG B 602 1555 1555 2.25 LINK O2B 8C6 B 601 MG MG B 602 1555 1555 2.32 LINK O2A 8C6 B 601 MG MG B 602 1555 1555 2.37 LINK MG MG B 602 O HOH B 775 1555 1555 2.33 LINK MG MG B 602 O HOH B 856 1555 1555 2.35 CISPEP 1 GLU A 332 PRO A 333 0 -2.86 CISPEP 2 GLU B 332 PRO B 333 0 -1.46 SITE 1 AC1 14 VAL A 281 ALA A 293 LYS A 295 THR A 338 SITE 2 AC1 14 GLU A 339 TYR A 340 MET A 341 LEU A 393 SITE 3 AC1 14 ASP A 404 MG A 601 HOH A 719 HOH A 730 SITE 4 AC1 14 HOH A 750 HOH A 755 SITE 1 AC2 5 ALA A 390 ASN A 391 ASP A 404 8C6 A 600 SITE 2 AC2 5 HOH A 835 SITE 1 AC3 22 GLY B 274 GLN B 275 GLY B 276 CYS B 277 SITE 2 AC3 22 PHE B 278 GLY B 279 VAL B 281 ALA B 293 SITE 3 AC3 22 LYS B 295 THR B 338 GLU B 339 MET B 341 SITE 4 AC3 22 ASN B 391 LEU B 393 ASP B 404 MG B 602 SITE 5 AC3 22 HOH B 705 HOH B 717 HOH B 726 HOH B 806 SITE 6 AC3 22 HOH B 820 HOH B 838 SITE 1 AC4 5 ASN B 391 ASP B 404 8C6 B 601 HOH B 775 SITE 2 AC4 5 HOH B 856 SITE 1 AC5 10 GLU A 517 ASP A 518 LYS B 427 VAL B 461 SITE 2 AC5 10 PRO B 464 GLY B 465 HOH B 711 HOH B 723 SITE 3 AC5 10 HOH B 766 HOH B 851 CRYST1 42.276 63.978 74.003 101.03 89.83 90.60 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023654 0.000247 -0.000022 0.00000 SCALE2 0.000000 0.015631 0.003045 0.00000 SCALE3 0.000000 0.000000 0.013767 0.00000