data_5XPW # _entry.id 5XPW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.291 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5XPW WWPDB D_1300003966 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5XPW _pdbx_database_status.recvd_initial_deposition_date 2017-06-05 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Chen, R.' 1 ? 'Qi, J.' 2 ? 'Zhang, N.' 3 ? 'Zhang, L.' 4 ? 'Yao, S.' 5 ? 'Wu, Y.' 6 ? 'Jiang, B.' 7 ? 'Wang, Z.' 8 ? 'Yuan, H.' 9 ? 'Zhang, Q.' 10 ? 'Xia, C.' 11 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'J. Immunol.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1550-6606 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 200 _citation.language ? _citation.page_first 2869 _citation.page_last 2881 _citation.title 'Discovery and Analysis of Invertebrate IgVJ-C2 Structure from Amphioxus Provides Insight into the Evolution of the Ig Superfamily.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.4049/jimmunol.1700906 _citation.pdbx_database_id_PubMed 29514951 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Chen, R.' 1 primary 'Zhang, L.' 2 primary 'Qi, J.' 3 primary 'Zhang, N.' 4 primary 'Zhang, L.' 5 primary 'Yao, S.' 6 primary 'Wu, Y.' 7 primary 'Jiang, B.' 8 primary 'Wang, Z.' 9 primary 'Yuan, H.' 10 primary 'Zhang, Q.' 11 primary 'Xia, C.' 12 # _cell.entry_id 5XPW _cell.length_a 41.755 _cell.length_b 41.755 _cell.length_c 213.719 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XPW _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'amphioxus IgVJ-C2' 19856.754 1 ? ? 'UNP RESIDUES 20-199' ? 2 water nat water 18.015 72 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'amphioxus IgVJ-C2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;VSHQQGQSHLFECDYPISADTYVINWYKDGTSVMNYLSGGEPAFTEDLDDRTDVQFVNNRNLEITNLRVSDEGEYYCSVI EIGAGGQSGDGTRYQLVVFVPPTITLMGGPYEVEVGEMMMSTCRANSHPPSNFTWTLPNGNVTQGAVLEITNMTQAEIGT YMCTADNGYGTDYESVDITM ; _entity_poly.pdbx_seq_one_letter_code_can ;VSHQQGQSHLFECDYPISADTYVINWYKDGTSVMNYLSGGEPAFTEDLDDRTDVQFVNNRNLEITNLRVSDEGEYYCSVI EIGAGGQSGDGTRYQLVVFVPPTITLMGGPYEVEVGEMMMSTCRANSHPPSNFTWTLPNGNVTQGAVLEITNMTQAEIGT YMCTADNGYGTDYESVDITM ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 VAL n 1 2 SER n 1 3 HIS n 1 4 GLN n 1 5 GLN n 1 6 GLY n 1 7 GLN n 1 8 SER n 1 9 HIS n 1 10 LEU n 1 11 PHE n 1 12 GLU n 1 13 CYS n 1 14 ASP n 1 15 TYR n 1 16 PRO n 1 17 ILE n 1 18 SER n 1 19 ALA n 1 20 ASP n 1 21 THR n 1 22 TYR n 1 23 VAL n 1 24 ILE n 1 25 ASN n 1 26 TRP n 1 27 TYR n 1 28 LYS n 1 29 ASP n 1 30 GLY n 1 31 THR n 1 32 SER n 1 33 VAL n 1 34 MET n 1 35 ASN n 1 36 TYR n 1 37 LEU n 1 38 SER n 1 39 GLY n 1 40 GLY n 1 41 GLU n 1 42 PRO n 1 43 ALA n 1 44 PHE n 1 45 THR n 1 46 GLU n 1 47 ASP n 1 48 LEU n 1 49 ASP n 1 50 ASP n 1 51 ARG n 1 52 THR n 1 53 ASP n 1 54 VAL n 1 55 GLN n 1 56 PHE n 1 57 VAL n 1 58 ASN n 1 59 ASN n 1 60 ARG n 1 61 ASN n 1 62 LEU n 1 63 GLU n 1 64 ILE n 1 65 THR n 1 66 ASN n 1 67 LEU n 1 68 ARG n 1 69 VAL n 1 70 SER n 1 71 ASP n 1 72 GLU n 1 73 GLY n 1 74 GLU n 1 75 TYR n 1 76 TYR n 1 77 CYS n 1 78 SER n 1 79 VAL n 1 80 ILE n 1 81 GLU n 1 82 ILE n 1 83 GLY n 1 84 ALA n 1 85 GLY n 1 86 GLY n 1 87 GLN n 1 88 SER n 1 89 GLY n 1 90 ASP n 1 91 GLY n 1 92 THR n 1 93 ARG n 1 94 TYR n 1 95 GLN n 1 96 LEU n 1 97 VAL n 1 98 VAL n 1 99 PHE n 1 100 VAL n 1 101 PRO n 1 102 PRO n 1 103 THR n 1 104 ILE n 1 105 THR n 1 106 LEU n 1 107 MET n 1 108 GLY n 1 109 GLY n 1 110 PRO n 1 111 TYR n 1 112 GLU n 1 113 VAL n 1 114 GLU n 1 115 VAL n 1 116 GLY n 1 117 GLU n 1 118 MET n 1 119 MET n 1 120 MET n 1 121 SER n 1 122 THR n 1 123 CYS n 1 124 ARG n 1 125 ALA n 1 126 ASN n 1 127 SER n 1 128 HIS n 1 129 PRO n 1 130 PRO n 1 131 SER n 1 132 ASN n 1 133 PHE n 1 134 THR n 1 135 TRP n 1 136 THR n 1 137 LEU n 1 138 PRO n 1 139 ASN n 1 140 GLY n 1 141 ASN n 1 142 VAL n 1 143 THR n 1 144 GLN n 1 145 GLY n 1 146 ALA n 1 147 VAL n 1 148 LEU n 1 149 GLU n 1 150 ILE n 1 151 THR n 1 152 ASN n 1 153 MET n 1 154 THR n 1 155 GLN n 1 156 ALA n 1 157 GLU n 1 158 ILE n 1 159 GLY n 1 160 THR n 1 161 TYR n 1 162 MET n 1 163 CYS n 1 164 THR n 1 165 ALA n 1 166 ASP n 1 167 ASN n 1 168 GLY n 1 169 TYR n 1 170 GLY n 1 171 THR n 1 172 ASP n 1 173 TYR n 1 174 GLU n 1 175 SER n 1 176 VAL n 1 177 ASP n 1 178 ILE n 1 179 THR n 1 180 MET n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 180 _entity_src_gen.gene_src_common_name 'Florida lancelet' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene BRAFLDRAFT_122935 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Branchiostoma floridae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 7739 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli 042' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 216592 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 042 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code C3ZN36_BRAFL _struct_ref.pdbx_db_accession C3ZN36 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;VSHQQGQSHLFECDYPISADTYVINWYKDGTSVMNYLSGGEPAFTEDLDDRTDVQFVNNRNLEITNLRVSDEGEYYCSVI EIGAGGQSGDGTRYQLVVFVPPTITLMGGPYEVEVGEMMMSTCRANSHPPSNFTWTLPNGNVTQGAVLEITNMTQAEIGT YMCTADNGYGTDYESVDITM ; _struct_ref.pdbx_align_begin 20 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5XPW _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 180 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession C3ZN36 _struct_ref_seq.db_align_beg 20 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 199 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 180 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5XPW _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.71 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 54.56 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.2M lithium sulfate monohydrate, 0.1M BIS-TRIS (pH 5.5), 25% w/v polyethylene glycol 3350' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 270' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2011-03-18 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.98051 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'PHOTON FACTORY BEAMLINE AR-NE3A' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.98051 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline AR-NE3A _diffrn_source.pdbx_synchrotron_site 'Photon Factory' # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5XPW _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.00 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 15493 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.2 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 15.9 _reflns.pdbx_Rmerge_I_obs 0.094 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value 0.094 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 24.8 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.07 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs 15268 _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 93.1 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.439 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 6.8 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5XPW _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 14607 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.16 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 34.253 _refine.ls_d_res_high 2.003 _refine.ls_percent_reflns_obs 94.29 _refine.ls_R_factor_obs 0.2281 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2261 _refine.ls_R_factor_R_free 0.2660 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.02 _refine.ls_number_reflns_R_free 734 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] 5.9517 _refine.aniso_B[2][2] 5.9517 _refine.aniso_B[3][3] -11.9034 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.411 _refine.solvent_model_param_bsol 58.747 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method NONE _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.29 _refine.pdbx_overall_phase_error 23.89 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1389 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 72 _refine_hist.number_atoms_total 1461 _refine_hist.d_res_high 2.003 _refine_hist.d_res_low 34.253 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.006 ? ? 1429 'X-RAY DIFFRACTION' ? f_angle_d 0.828 ? ? 1948 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 18.159 ? ? 499 'X-RAY DIFFRACTION' ? f_chiral_restr 0.056 ? ? 214 'X-RAY DIFFRACTION' ? f_plane_restr 0.003 ? ? 261 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.0029 2.1575 2411 0.2467 85.00 0.2790 . . 125 . . . . 'X-RAY DIFFRACTION' . 2.1575 2.3746 2693 0.2305 94.00 0.2959 . . 159 . . . . 'X-RAY DIFFRACTION' . 2.3746 2.7181 2848 0.2317 98.00 0.2567 . . 137 . . . . 'X-RAY DIFFRACTION' . 2.7181 3.4240 2948 0.1870 100.00 0.2275 . . 153 . . . . 'X-RAY DIFFRACTION' . 3.4240 34.2578 2973 0.2353 95.00 0.2741 . . 160 . . . . # _struct.entry_id 5XPW _struct.title 'Structure of amphioxus IgVJ-C2 molecule' _struct.pdbx_descriptor 'amphioxus IgVJ-C2' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5XPW _struct_keywords.text 'Immunoglobulin superfamily, dimmer, IMMUNE SYSTEM' _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLU A 46 ? ASP A 49 ? GLU A 46 ASP A 49 5 ? 4 HELX_P HELX_P2 AA2 ARG A 68 ? GLU A 72 ? ARG A 68 GLU A 72 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 13 SG ? ? ? 1_555 A CYS 77 SG ? ? A CYS 13 A CYS 77 1_555 ? ? ? ? ? ? ? 2.040 ? disulf2 disulf ? ? A CYS 123 SG ? ? ? 1_555 A CYS 163 SG ? ? A CYS 123 A CYS 163 1_555 ? ? ? ? ? ? ? 2.024 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLY 109 A . ? GLY 109 A PRO 110 A ? PRO 110 A 1 -4.88 2 HIS 128 A . ? HIS 128 A PRO 129 A ? PRO 129 A 1 1.27 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 7 ? AA3 ? 3 ? AA4 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA2 5 6 ? anti-parallel AA2 6 7 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 SER A 2 ? GLN A 4 ? SER A 2 GLN A 4 AA1 2 TYR A 94 ? GLY A 109 ? TYR A 94 GLY A 109 AA1 3 GLY A 73 ? GLU A 81 ? GLY A 73 GLU A 81 AA1 4 SER A 88 ? ASP A 90 ? SER A 88 ASP A 90 AA2 1 ALA A 43 ? PHE A 44 ? ALA A 43 PHE A 44 AA2 2 THR A 31 ? LEU A 37 ? THR A 31 LEU A 37 AA2 3 TYR A 22 ? LYS A 28 ? TYR A 22 LYS A 28 AA2 4 GLY A 73 ? GLU A 81 ? GLY A 73 GLU A 81 AA2 5 TYR A 94 ? GLY A 109 ? TYR A 94 GLY A 109 AA2 6 MET A 119 ? HIS A 128 ? MET A 119 HIS A 128 AA2 7 VAL A 147 ? ILE A 150 ? VAL A 147 ILE A 150 AA3 1 HIS A 9 ? PHE A 11 ? HIS A 9 PHE A 11 AA3 2 ASN A 61 ? ILE A 64 ? ASN A 61 ILE A 64 AA3 3 VAL A 54 ? VAL A 57 ? VAL A 54 VAL A 57 AA4 1 VAL A 142 ? GLN A 144 ? VAL A 142 GLN A 144 AA4 2 ASN A 132 ? THR A 136 ? ASN A 132 THR A 136 AA4 3 GLY A 159 ? ASP A 166 ? GLY A 159 ASP A 166 AA4 4 THR A 171 ? ILE A 178 ? THR A 171 ILE A 178 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N HIS A 3 ? N HIS A 3 O PHE A 99 ? O PHE A 99 AA1 2 3 O TYR A 94 ? O TYR A 94 N TYR A 75 ? N TYR A 75 AA1 3 4 N VAL A 79 ? N VAL A 79 O GLY A 89 ? O GLY A 89 AA2 1 2 O ALA A 43 ? O ALA A 43 N ASN A 35 ? N ASN A 35 AA2 2 3 O VAL A 33 ? O VAL A 33 N TRP A 26 ? N TRP A 26 AA2 3 4 N TYR A 27 ? N TYR A 27 O TYR A 76 ? O TYR A 76 AA2 4 5 N TYR A 75 ? N TYR A 75 O TYR A 94 ? O TYR A 94 AA2 5 6 N MET A 107 ? N MET A 107 O THR A 122 ? O THR A 122 AA2 6 7 N SER A 121 ? N SER A 121 O LEU A 148 ? O LEU A 148 AA3 1 2 N PHE A 11 ? N PHE A 11 O LEU A 62 ? O LEU A 62 AA3 2 3 O GLU A 63 ? O GLU A 63 N GLN A 55 ? N GLN A 55 AA4 1 2 O THR A 143 ? O THR A 143 N TRP A 135 ? N TRP A 135 AA4 2 3 N THR A 136 ? N THR A 136 O MET A 162 ? O MET A 162 AA4 3 4 N TYR A 161 ? N TYR A 161 O VAL A 176 ? O VAL A 176 # _atom_sites.entry_id 5XPW _atom_sites.fract_transf_matrix[1][1] 0.023949 _atom_sites.fract_transf_matrix[1][2] 0.013827 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.027654 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004679 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 VAL 1 1 1 VAL VAL A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 HIS 3 3 3 HIS HIS A . n A 1 4 GLN 4 4 4 GLN GLN A . n A 1 5 GLN 5 5 5 GLN GLN A . n A 1 6 GLY 6 6 6 GLY GLY A . n A 1 7 GLN 7 7 7 GLN GLN A . n A 1 8 SER 8 8 8 SER SER A . n A 1 9 HIS 9 9 9 HIS HIS A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 PHE 11 11 11 PHE PHE A . n A 1 12 GLU 12 12 12 GLU GLU A . n A 1 13 CYS 13 13 13 CYS CYS A . n A 1 14 ASP 14 14 14 ASP ASP A . n A 1 15 TYR 15 15 15 TYR TYR A . n A 1 16 PRO 16 16 16 PRO PRO A . n A 1 17 ILE 17 17 17 ILE ILE A . n A 1 18 SER 18 18 18 SER SER A . n A 1 19 ALA 19 19 19 ALA ALA A . n A 1 20 ASP 20 20 20 ASP ASP A . n A 1 21 THR 21 21 21 THR THR A . n A 1 22 TYR 22 22 22 TYR TYR A . n A 1 23 VAL 23 23 23 VAL VAL A . n A 1 24 ILE 24 24 24 ILE ILE A . n A 1 25 ASN 25 25 25 ASN ASN A . n A 1 26 TRP 26 26 26 TRP TRP A . n A 1 27 TYR 27 27 27 TYR TYR A . n A 1 28 LYS 28 28 28 LYS LYS A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 GLY 30 30 30 GLY GLY A . n A 1 31 THR 31 31 31 THR THR A . n A 1 32 SER 32 32 32 SER SER A . n A 1 33 VAL 33 33 33 VAL VAL A . n A 1 34 MET 34 34 34 MET MET A . n A 1 35 ASN 35 35 35 ASN ASN A . n A 1 36 TYR 36 36 36 TYR TYR A . n A 1 37 LEU 37 37 37 LEU LEU A . n A 1 38 SER 38 38 38 SER SER A . n A 1 39 GLY 39 39 39 GLY GLY A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 GLU 41 41 41 GLU GLU A . n A 1 42 PRO 42 42 42 PRO PRO A . n A 1 43 ALA 43 43 43 ALA ALA A . n A 1 44 PHE 44 44 44 PHE PHE A . n A 1 45 THR 45 45 45 THR THR A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 ASP 47 47 47 ASP ASP A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 ASP 49 49 49 ASP ASP A . n A 1 50 ASP 50 50 50 ASP ASP A . n A 1 51 ARG 51 51 51 ARG ARG A . n A 1 52 THR 52 52 52 THR THR A . n A 1 53 ASP 53 53 53 ASP ASP A . n A 1 54 VAL 54 54 54 VAL VAL A . n A 1 55 GLN 55 55 55 GLN GLN A . n A 1 56 PHE 56 56 56 PHE PHE A . n A 1 57 VAL 57 57 57 VAL VAL A . n A 1 58 ASN 58 58 58 ASN ASN A . n A 1 59 ASN 59 59 59 ASN ASN A . n A 1 60 ARG 60 60 60 ARG ARG A . n A 1 61 ASN 61 61 61 ASN ASN A . n A 1 62 LEU 62 62 62 LEU LEU A . n A 1 63 GLU 63 63 63 GLU GLU A . n A 1 64 ILE 64 64 64 ILE ILE A . n A 1 65 THR 65 65 65 THR THR A . n A 1 66 ASN 66 66 66 ASN ASN A . n A 1 67 LEU 67 67 67 LEU LEU A . n A 1 68 ARG 68 68 68 ARG ARG A . n A 1 69 VAL 69 69 69 VAL VAL A . n A 1 70 SER 70 70 70 SER SER A . n A 1 71 ASP 71 71 71 ASP ASP A . n A 1 72 GLU 72 72 72 GLU GLU A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 GLU 74 74 74 GLU GLU A . n A 1 75 TYR 75 75 75 TYR TYR A . n A 1 76 TYR 76 76 76 TYR TYR A . n A 1 77 CYS 77 77 77 CYS CYS A . n A 1 78 SER 78 78 78 SER SER A . n A 1 79 VAL 79 79 79 VAL VAL A . n A 1 80 ILE 80 80 80 ILE ILE A . n A 1 81 GLU 81 81 81 GLU GLU A . n A 1 82 ILE 82 82 82 ILE ILE A . n A 1 83 GLY 83 83 83 GLY GLY A . n A 1 84 ALA 84 84 84 ALA ALA A . n A 1 85 GLY 85 85 85 GLY GLY A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 GLN 87 87 87 GLN GLN A . n A 1 88 SER 88 88 88 SER SER A . n A 1 89 GLY 89 89 89 GLY GLY A . n A 1 90 ASP 90 90 90 ASP ASP A . n A 1 91 GLY 91 91 91 GLY GLY A . n A 1 92 THR 92 92 92 THR THR A . n A 1 93 ARG 93 93 93 ARG ARG A . n A 1 94 TYR 94 94 94 TYR TYR A . n A 1 95 GLN 95 95 95 GLN GLN A . n A 1 96 LEU 96 96 96 LEU LEU A . n A 1 97 VAL 97 97 97 VAL VAL A . n A 1 98 VAL 98 98 98 VAL VAL A . n A 1 99 PHE 99 99 99 PHE PHE A . n A 1 100 VAL 100 100 100 VAL VAL A . n A 1 101 PRO 101 101 101 PRO PRO A . n A 1 102 PRO 102 102 102 PRO PRO A . n A 1 103 THR 103 103 103 THR THR A . n A 1 104 ILE 104 104 104 ILE ILE A . n A 1 105 THR 105 105 105 THR THR A . n A 1 106 LEU 106 106 106 LEU LEU A . n A 1 107 MET 107 107 107 MET MET A . n A 1 108 GLY 108 108 108 GLY GLY A . n A 1 109 GLY 109 109 109 GLY GLY A . n A 1 110 PRO 110 110 110 PRO PRO A . n A 1 111 TYR 111 111 111 TYR TYR A . n A 1 112 GLU 112 112 112 GLU GLU A . n A 1 113 VAL 113 113 113 VAL VAL A . n A 1 114 GLU 114 114 114 GLU GLU A . n A 1 115 VAL 115 115 115 VAL VAL A . n A 1 116 GLY 116 116 116 GLY GLY A . n A 1 117 GLU 117 117 117 GLU GLU A . n A 1 118 MET 118 118 118 MET MET A . n A 1 119 MET 119 119 119 MET MET A . n A 1 120 MET 120 120 120 MET MET A . n A 1 121 SER 121 121 121 SER SER A . n A 1 122 THR 122 122 122 THR THR A . n A 1 123 CYS 123 123 123 CYS CYS A . n A 1 124 ARG 124 124 124 ARG ARG A . n A 1 125 ALA 125 125 125 ALA ALA A . n A 1 126 ASN 126 126 126 ASN ASN A . n A 1 127 SER 127 127 127 SER SER A . n A 1 128 HIS 128 128 128 HIS HIS A . n A 1 129 PRO 129 129 129 PRO PRO A . n A 1 130 PRO 130 130 130 PRO PRO A . n A 1 131 SER 131 131 131 SER SER A . n A 1 132 ASN 132 132 132 ASN ASN A . n A 1 133 PHE 133 133 133 PHE PHE A . n A 1 134 THR 134 134 134 THR THR A . n A 1 135 TRP 135 135 135 TRP TRP A . n A 1 136 THR 136 136 136 THR THR A . n A 1 137 LEU 137 137 137 LEU LEU A . n A 1 138 PRO 138 138 138 PRO PRO A . n A 1 139 ASN 139 139 139 ASN ASN A . n A 1 140 GLY 140 140 140 GLY GLY A . n A 1 141 ASN 141 141 141 ASN ASN A . n A 1 142 VAL 142 142 142 VAL VAL A . n A 1 143 THR 143 143 143 THR THR A . n A 1 144 GLN 144 144 144 GLN GLN A . n A 1 145 GLY 145 145 145 GLY GLY A . n A 1 146 ALA 146 146 146 ALA ALA A . n A 1 147 VAL 147 147 147 VAL VAL A . n A 1 148 LEU 148 148 148 LEU LEU A . n A 1 149 GLU 149 149 149 GLU GLU A . n A 1 150 ILE 150 150 150 ILE ILE A . n A 1 151 THR 151 151 151 THR THR A . n A 1 152 ASN 152 152 152 ASN ASN A . n A 1 153 MET 153 153 153 MET MET A . n A 1 154 THR 154 154 154 THR THR A . n A 1 155 GLN 155 155 155 GLN GLN A . n A 1 156 ALA 156 156 156 ALA ALA A . n A 1 157 GLU 157 157 157 GLU GLU A . n A 1 158 ILE 158 158 158 ILE ILE A . n A 1 159 GLY 159 159 159 GLY GLY A . n A 1 160 THR 160 160 160 THR THR A . n A 1 161 TYR 161 161 161 TYR TYR A . n A 1 162 MET 162 162 162 MET MET A . n A 1 163 CYS 163 163 163 CYS CYS A . n A 1 164 THR 164 164 164 THR THR A . n A 1 165 ALA 165 165 165 ALA ALA A . n A 1 166 ASP 166 166 166 ASP ASP A . n A 1 167 ASN 167 167 167 ASN ASN A . n A 1 168 GLY 168 168 168 GLY GLY A . n A 1 169 TYR 169 169 169 TYR TYR A . n A 1 170 GLY 170 170 170 GLY GLY A . n A 1 171 THR 171 171 171 THR THR A . n A 1 172 ASP 172 172 172 ASP ASP A . n A 1 173 TYR 173 173 173 TYR TYR A . n A 1 174 GLU 174 174 174 GLU GLU A . n A 1 175 SER 175 175 175 SER SER A . n A 1 176 VAL 176 176 176 VAL VAL A . n A 1 177 ASP 177 177 177 ASP ASP A . n A 1 178 ILE 178 178 178 ILE ILE A . n A 1 179 THR 179 179 179 THR THR A . n A 1 180 MET 180 180 180 MET MET A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 201 26 HOH HOH A . B 2 HOH 2 202 1 HOH HOH A . B 2 HOH 3 203 44 HOH HOH A . B 2 HOH 4 204 50 HOH HOH A . B 2 HOH 5 205 48 HOH HOH A . B 2 HOH 6 206 33 HOH HOH A . B 2 HOH 7 207 20 HOH HOH A . B 2 HOH 8 208 5 HOH HOH A . B 2 HOH 9 209 8 HOH HOH A . B 2 HOH 10 210 56 HOH HOH A . B 2 HOH 11 211 34 HOH HOH A . B 2 HOH 12 212 43 HOH HOH A . B 2 HOH 13 213 36 HOH HOH A . B 2 HOH 14 214 24 HOH HOH A . B 2 HOH 15 215 15 HOH HOH A . B 2 HOH 16 216 53 HOH HOH A . B 2 HOH 17 217 22 HOH HOH A . B 2 HOH 18 218 40 HOH HOH A . B 2 HOH 19 219 3 HOH HOH A . B 2 HOH 20 220 13 HOH HOH A . B 2 HOH 21 221 25 HOH HOH A . B 2 HOH 22 222 10 HOH HOH A . B 2 HOH 23 223 31 HOH HOH A . B 2 HOH 24 224 2 HOH HOH A . B 2 HOH 25 225 9 HOH HOH A . B 2 HOH 26 226 37 HOH HOH A . B 2 HOH 27 227 35 HOH HOH A . B 2 HOH 28 228 21 HOH HOH A . B 2 HOH 29 229 47 HOH HOH A . B 2 HOH 30 230 27 HOH HOH A . B 2 HOH 31 231 68 HOH HOH A . B 2 HOH 32 232 12 HOH HOH A . B 2 HOH 33 233 14 HOH HOH A . B 2 HOH 34 234 6 HOH HOH A . B 2 HOH 35 235 19 HOH HOH A . B 2 HOH 36 236 29 HOH HOH A . B 2 HOH 37 237 32 HOH HOH A . B 2 HOH 38 238 61 HOH HOH A . B 2 HOH 39 239 51 HOH HOH A . B 2 HOH 40 240 16 HOH HOH A . B 2 HOH 41 241 54 HOH HOH A . B 2 HOH 42 242 7 HOH HOH A . B 2 HOH 43 243 4 HOH HOH A . B 2 HOH 44 244 45 HOH HOH A . B 2 HOH 45 245 52 HOH HOH A . B 2 HOH 46 246 17 HOH HOH A . B 2 HOH 47 247 18 HOH HOH A . B 2 HOH 48 248 30 HOH HOH A . B 2 HOH 49 249 57 HOH HOH A . B 2 HOH 50 250 69 HOH HOH A . B 2 HOH 51 251 41 HOH HOH A . B 2 HOH 52 252 23 HOH HOH A . B 2 HOH 53 253 60 HOH HOH A . B 2 HOH 54 254 28 HOH HOH A . B 2 HOH 55 255 49 HOH HOH A . B 2 HOH 56 256 38 HOH HOH A . B 2 HOH 57 257 11 HOH HOH A . B 2 HOH 58 258 67 HOH HOH A . B 2 HOH 59 259 55 HOH HOH A . B 2 HOH 60 260 65 HOH HOH A . B 2 HOH 61 261 62 HOH HOH A . B 2 HOH 62 262 66 HOH HOH A . B 2 HOH 63 263 63 HOH HOH A . B 2 HOH 64 264 58 HOH HOH A . B 2 HOH 65 265 71 HOH HOH A . B 2 HOH 66 266 39 HOH HOH A . B 2 HOH 67 267 64 HOH HOH A . B 2 HOH 68 268 59 HOH HOH A . B 2 HOH 69 269 72 HOH HOH A . B 2 HOH 70 270 42 HOH HOH A . B 2 HOH 71 271 70 HOH HOH A . B 2 HOH 72 272 46 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B 1 2 A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_555 y,x,-z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-04-18 2 'Structure model' 1 1 2018-04-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 6.5601 _pdbx_refine_tls.origin_y 4.4873 _pdbx_refine_tls.origin_z 10.6224 _pdbx_refine_tls.T[1][1] 0.3462 _pdbx_refine_tls.T[2][2] 0.3263 _pdbx_refine_tls.T[3][3] 0.3387 _pdbx_refine_tls.T[1][2] 0.0243 _pdbx_refine_tls.T[1][3] -0.0005 _pdbx_refine_tls.T[2][3] 0.0213 _pdbx_refine_tls.L[1][1] 0.1433 _pdbx_refine_tls.L[2][2] 0.1927 _pdbx_refine_tls.L[3][3] 0.2233 _pdbx_refine_tls.L[1][2] 0.0473 _pdbx_refine_tls.L[1][3] 0.0945 _pdbx_refine_tls.L[2][3] 0.0077 _pdbx_refine_tls.S[1][1] -0.0628 _pdbx_refine_tls.S[1][2] -0.0275 _pdbx_refine_tls.S[1][3] -0.0723 _pdbx_refine_tls.S[2][1] 0.0591 _pdbx_refine_tls.S[2][2] 0.0020 _pdbx_refine_tls.S[2][3] -0.0754 _pdbx_refine_tls.S[3][1] -0.0551 _pdbx_refine_tls.S[3][2] 0.1397 _pdbx_refine_tls.S[3][3] -0.0000 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details all # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.5_2 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 NH1 A ARG 124 ? ? 1_555 O A HOH 262 ? ? 4_655 1.71 2 1 O A HOH 221 ? ? 1_555 O A HOH 262 ? ? 4_655 1.84 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 16 ? ? -67.75 97.27 2 1 GLU A 46 ? ? 55.41 -126.44 3 1 ARG A 60 ? ? -141.05 -55.26 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'the China Ministry of Science and Technology' China 2013CB835302 1 'the State Key Program of the National Natural Science Foundation of China' China 31230074 2 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details dimmer #