HEADER RIBOSOMAL PROTEIN 06-JUN-17 5XQ5 TITLE NMR STRUCTURE OF THE DOMAIN 5 OF THE E. COLI RIBOSOMAL PROTEIN S1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 30S RIBOSOMAL PROTEIN S1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 350-443; COMPND 5 SYNONYM: BACTERIOPHAGE Q BETA RNA-DIRECTED RNA POLYMERASE SUBUNIT I, COMPND 6 SMALL RIBOSOMAL SUBUNIT PROTEIN BS1; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: NONE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: RPSA, SSYF, B0911, JW0894; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS S1 RNA-BINDING DOMAIN, E. COLI RIBOSOMAL PROTEIN, NMR SOLUTION KEYWDS 2 STRUCTURE, RIBOSOMAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 5 AUTHOR Y.LU,L.Z.LIM,J.SONG REVDAT 3 15-MAY-24 5XQ5 1 REMARK REVDAT 2 14-JUN-23 5XQ5 1 REMARK REVDAT 1 06-JUN-18 5XQ5 0 JRNL AUTH Y.LU,L.Z.LIM,J.SONG JRNL TITL NMR STRUCTURE OF THE DOMAIN 5 OF THE E. COLI RIBOSOMAL JRNL TITL 2 PROTEIN S1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5XQ5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1300003982. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.6 REMARK 210 IONIC STRENGTH : 10 REMARK 210 PRESSURE : 1 PA REMARK 210 SAMPLE CONTENTS : 700 UM [U-99% 13C; U-99% 15N] REMARK 210 DOMAIN 5 OF THE E. COLI REMARK 210 RIBOSOMAL PROTEIN S1, 10 MM REMARK 210 SODIUM PHOSPHATE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-15N REMARK 210 TOCSY; 3D HNCACB; 3D CBCA(CO)NH; REMARK 210 2D 1H-15N HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPNMR 2.4.1, CYANA 2.1 REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 5 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-5 REMARK 465 RES C SSSEQI REMARK 465 MET A 0 REMARK 465 LEU A 95 REMARK 465 GLU A 96 REMARK 465 HIS A 97 REMARK 465 HIS A 98 REMARK 465 HIS A 99 REMARK 465 HIS A 100 REMARK 465 HIS A 101 REMARK 465 HIS A 102 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 14 112.20 -176.18 REMARK 500 1 PHE A 28 19.75 -152.97 REMARK 500 1 SER A 48 156.55 67.25 REMARK 500 1 ASN A 50 -48.10 -150.52 REMARK 500 1 TYR A 60 -178.31 -58.89 REMARK 500 1 GLU A 65 -69.92 178.33 REMARK 500 1 GLU A 89 -179.36 -69.49 REMARK 500 2 ALA A 2 51.28 -140.21 REMARK 500 2 LYS A 14 116.43 -177.23 REMARK 500 2 PHE A 28 18.88 -152.53 REMARK 500 2 VAL A 42 119.59 -161.14 REMARK 500 2 SER A 48 157.31 67.40 REMARK 500 2 ASN A 50 -47.94 -151.54 REMARK 500 2 TYR A 60 -176.71 -68.57 REMARK 500 2 GLU A 65 -66.88 -176.92 REMARK 500 2 LEU A 71 -51.21 -122.93 REMARK 500 2 GLU A 89 174.46 -58.52 REMARK 500 2 ASN A 93 144.63 -176.72 REMARK 500 3 ALA A 2 84.02 62.44 REMARK 500 3 PRO A 4 84.93 -67.47 REMARK 500 3 LYS A 14 114.28 -177.52 REMARK 500 3 SER A 24 -173.08 -61.29 REMARK 500 3 PHE A 28 28.29 -154.00 REMARK 500 3 LEU A 34 -169.74 -107.68 REMARK 500 3 SER A 48 172.50 67.93 REMARK 500 3 ASN A 50 -48.26 -153.94 REMARK 500 3 PHE A 92 166.14 66.39 REMARK 500 4 PRO A 4 79.78 -69.51 REMARK 500 4 LYS A 14 112.79 -178.30 REMARK 500 4 PHE A 28 31.46 -154.11 REMARK 500 4 SER A 48 173.46 67.10 REMARK 500 4 ASN A 50 -48.34 -157.72 REMARK 500 4 TYR A 60 -168.83 47.31 REMARK 500 4 GLU A 65 -77.92 -179.74 REMARK 500 4 VAL A 73 148.12 -172.23 REMARK 500 4 GLU A 89 -177.01 -60.79 REMARK 500 4 PHE A 92 167.32 65.38 REMARK 500 5 ASN A 3 68.21 -119.95 REMARK 500 5 LYS A 14 117.50 -174.84 REMARK 500 5 PHE A 28 15.39 -156.16 REMARK 500 5 ILE A 30 -120.06 -77.35 REMARK 500 5 SER A 48 151.63 68.86 REMARK 500 5 ASN A 50 -48.10 -152.43 REMARK 500 5 VAL A 73 142.75 -171.78 REMARK 500 5 ALA A 88 112.14 -178.55 REMARK 500 5 PHE A 92 164.49 65.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36095 RELATED DB: BMRB REMARK 900 NMR STRUCTURE OF THE DOMAIN 5 OF THE E. COLI RIBOSOMAL PROTEIN S1 DBREF 5XQ5 A 1 94 UNP P0AG67 RS1_ECOLI 350 443 SEQADV 5XQ5 MET A 0 UNP P0AG67 EXPRESSION TAG SEQADV 5XQ5 LEU A 95 UNP P0AG67 EXPRESSION TAG SEQADV 5XQ5 GLU A 96 UNP P0AG67 EXPRESSION TAG SEQADV 5XQ5 HIS A 97 UNP P0AG67 EXPRESSION TAG SEQADV 5XQ5 HIS A 98 UNP P0AG67 EXPRESSION TAG SEQADV 5XQ5 HIS A 99 UNP P0AG67 EXPRESSION TAG SEQADV 5XQ5 HIS A 100 UNP P0AG67 EXPRESSION TAG SEQADV 5XQ5 HIS A 101 UNP P0AG67 EXPRESSION TAG SEQADV 5XQ5 HIS A 102 UNP P0AG67 EXPRESSION TAG SEQRES 1 A 103 MET LYS ALA ASN PRO TRP GLN GLN PHE ALA GLU THR HIS SEQRES 2 A 103 ASN LYS GLY ASP ARG VAL GLU GLY LYS ILE LYS SER ILE SEQRES 3 A 103 THR ASP PHE GLY ILE PHE ILE GLY LEU ASP GLY GLY ILE SEQRES 4 A 103 ASP GLY LEU VAL HIS LEU SER ASP ILE SER TRP ASN VAL SEQRES 5 A 103 ALA GLY GLU GLU ALA VAL ARG GLU TYR LYS LYS GLY ASP SEQRES 6 A 103 GLU ILE ALA ALA VAL VAL LEU GLN VAL ASP ALA GLU ARG SEQRES 7 A 103 GLU ARG ILE SER LEU GLY VAL LYS GLN LEU ALA GLU ASP SEQRES 8 A 103 PRO PHE ASN ASN LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 AA1 PRO A 4 ALA A 9 1 6 HELIX 2 AA2 GLU A 10 ASN A 13 5 4 HELIX 3 AA3 VAL A 42 ILE A 47 5 6 HELIX 4 AA4 ALA A 52 VAL A 57 1 6 HELIX 5 AA5 ARG A 58 TYR A 60 5 3 HELIX 6 AA6 GLY A 83 ALA A 88 1 6 SHEET 1 AA1 3 ASP A 16 GLU A 19 0 SHEET 2 AA1 3 ALA A 67 VAL A 73 -1 O ALA A 68 N VAL A 18 SHEET 3 AA1 3 ILE A 80 LEU A 82 -1 O SER A 81 N GLN A 72 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1