HEADER HYDROLASE 08-JUN-17 5XRF TITLE CRYSTAL STRUCTURE OF DA-36, A THROMBIN-LIKE ENZYME FROM TITLE 2 DEINAGKISTRODON ACUTUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SNAKE VENOM SERINE PROTEASE DA-36; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINAGKISTRODON ACUTUS; SOURCE 3 ORGANISM_COMMON: HUNDRED-PACE SNAKE; SOURCE 4 ORGANISM_TAXID: 36307 KEYWDS THROMBIN-LIKE ENZYME, SNAKE VENOM, DEINAGKISTRODON ACUTUS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.-C.LIN,W.-G.WU,Q.FAN,J.TIAN,Z.ZHANG,Y.ZHENG REVDAT 4 06-NOV-24 5XRF 1 REMARK REVDAT 3 22-NOV-23 5XRF 1 HETSYN LINK REVDAT 2 29-JUL-20 5XRF 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 13-JUN-18 5XRF 0 JRNL AUTH Q.FAN,J.TIAN,Z.ZHANG,C.-C.LIN,W.-G.WU,Y.ZHENG JRNL TITL CRYSTAL STRUCTURE OF DA-36, A THROMBIN-LIKE ENZYME FROM JRNL TITL 2 DEINAGKISTRODON ACUTUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 23688 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.420 REMARK 3 FREE R VALUE TEST SET COUNT : 1284 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.8860 - 4.5751 0.99 2635 144 0.1753 0.1746 REMARK 3 2 4.5751 - 3.6323 1.00 2543 142 0.1453 0.1819 REMARK 3 3 3.6323 - 3.1735 1.00 2525 142 0.1758 0.1750 REMARK 3 4 3.1735 - 2.8834 1.00 2532 134 0.1964 0.2183 REMARK 3 5 2.8834 - 2.6768 1.00 2510 123 0.2101 0.2335 REMARK 3 6 2.6768 - 2.5190 1.00 2505 129 0.2094 0.2361 REMARK 3 7 2.5190 - 2.3929 1.00 2460 162 0.2169 0.2471 REMARK 3 8 2.3929 - 2.2887 1.00 2473 169 0.2118 0.2380 REMARK 3 9 2.2887 - 2.2006 0.90 2221 139 0.2111 0.2253 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.610 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2050 REMARK 3 ANGLE : 0.843 2806 REMARK 3 CHIRALITY : 0.044 331 REMARK 3 PLANARITY : 0.004 344 REMARK 3 DIHEDRAL : 15.456 1238 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 25 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.9302 47.4696 41.9294 REMARK 3 T TENSOR REMARK 3 T11: 0.2240 T22: 0.2062 REMARK 3 T33: 0.2479 T12: 0.1137 REMARK 3 T13: 0.0106 T23: -0.0127 REMARK 3 L TENSOR REMARK 3 L11: 1.6721 L22: 1.1160 REMARK 3 L33: 3.1049 L12: -0.0537 REMARK 3 L13: 1.6311 L23: -1.0385 REMARK 3 S TENSOR REMARK 3 S11: -0.0977 S12: -0.1769 S13: 0.0687 REMARK 3 S21: -0.1905 S22: -0.1580 S23: -0.1833 REMARK 3 S31: 0.0938 S32: -0.0416 S33: 0.1435 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 66 THROUGH 77 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.1156 42.0020 38.0485 REMARK 3 T TENSOR REMARK 3 T11: 0.3099 T22: 0.2824 REMARK 3 T33: 0.3522 T12: 0.1493 REMARK 3 T13: 0.1054 T23: 0.0594 REMARK 3 L TENSOR REMARK 3 L11: 2.3843 L22: 0.8352 REMARK 3 L33: 3.0133 L12: 0.0658 REMARK 3 L13: -0.6906 L23: -1.5501 REMARK 3 S TENSOR REMARK 3 S11: 0.0816 S12: 0.1893 S13: -0.3051 REMARK 3 S21: -0.4363 S22: -0.2246 S23: -0.4109 REMARK 3 S31: 0.4532 S32: 0.5372 S33: 0.1630 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 78 THROUGH 107 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.9419 41.8893 36.8700 REMARK 3 T TENSOR REMARK 3 T11: 0.3969 T22: 0.2947 REMARK 3 T33: 0.3034 T12: 0.1912 REMARK 3 T13: 0.0617 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.8192 L22: 0.4232 REMARK 3 L33: 4.2124 L12: -0.0490 REMARK 3 L13: -0.5653 L23: 0.1220 REMARK 3 S TENSOR REMARK 3 S11: 0.0662 S12: 0.1116 S13: -0.2060 REMARK 3 S21: -0.4352 S22: -0.1947 S23: -0.1622 REMARK 3 S31: 0.5283 S32: 0.1880 S33: 0.0022 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 108 THROUGH 148 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.1681 48.1773 33.3033 REMARK 3 T TENSOR REMARK 3 T11: 0.3046 T22: 0.1847 REMARK 3 T33: 0.2196 T12: 0.1146 REMARK 3 T13: 0.0206 T23: -0.0168 REMARK 3 L TENSOR REMARK 3 L11: 0.9439 L22: 1.4573 REMARK 3 L33: 3.4596 L12: -0.2989 REMARK 3 L13: 0.7289 L23: -0.1540 REMARK 3 S TENSOR REMARK 3 S11: -0.0239 S12: -0.0854 S13: 0.0148 REMARK 3 S21: -0.3806 S22: -0.1434 S23: -0.1671 REMARK 3 S31: 0.2889 S32: -0.1231 S33: 0.1255 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 149 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.5570 62.0933 33.1724 REMARK 3 T TENSOR REMARK 3 T11: 0.4096 T22: 0.2166 REMARK 3 T33: 0.4502 T12: 0.0489 REMARK 3 T13: -0.1344 T23: 0.0970 REMARK 3 L TENSOR REMARK 3 L11: 1.0968 L22: 2.3031 REMARK 3 L33: 3.2945 L12: -1.1407 REMARK 3 L13: 1.5201 L23: -0.4307 REMARK 3 S TENSOR REMARK 3 S11: -0.3691 S12: 0.2015 S13: 0.4861 REMARK 3 S21: -0.1234 S22: -0.2922 S23: -0.5460 REMARK 3 S31: -0.8264 S32: 0.4181 S33: 0.4974 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 208 THROUGH 260 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.6657 51.6227 26.8360 REMARK 3 T TENSOR REMARK 3 T11: 0.3957 T22: 0.1944 REMARK 3 T33: 0.2086 T12: 0.1401 REMARK 3 T13: 0.0119 T23: 0.0244 REMARK 3 L TENSOR REMARK 3 L11: 3.8562 L22: 4.3602 REMARK 3 L33: 3.3570 L12: 0.8774 REMARK 3 L13: 1.0506 L23: 0.2697 REMARK 3 S TENSOR REMARK 3 S11: -0.0388 S12: 0.3852 S13: -0.0152 REMARK 3 S21: -0.4076 S22: -0.2068 S23: -0.4220 REMARK 3 S31: 0.0917 S32: 0.1976 S33: 0.1732 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5XRF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1300003933. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23907 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 10.80 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 27.5200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.00 REMARK 200 R MERGE FOR SHELL (I) : 0.72900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.576 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4GSO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MAGNESIUM ACETATE TETRAHYDRATE, REMARK 280 0.1M SODIUM CACODYLATE TRIHYDRATE PH 6.5, 20% POLYETHYLENE REMARK 280 GLYCOL 8000, EVAPORATION, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.78267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 34.89133 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 34.89133 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 69.78267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 19 REMARK 465 LYS A 20 REMARK 465 SER A 21 REMARK 465 SER A 22 REMARK 465 GLU A 23 REMARK 465 LEU A 24 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 618 O HOH A 654 2.07 REMARK 500 C6 NAG C 1 C1 FUC C 5 2.14 REMARK 500 O HOH A 588 O HOH A 618 2.16 REMARK 500 O THR A 255 O HOH A 401 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HH22 ARG A 46 OE2 GLU A 89 4556 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 47 C - N - CD ANGL. DEV. = 15.3 DEGREES REMARK 500 PRO A 226 C - N - CD ANGL. DEV. = 14.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 36 46.37 -143.20 REMARK 500 CYS A 52 -159.11 -166.07 REMARK 500 HIS A 80 -82.25 -121.76 REMARK 500 ARG A 101 55.27 -119.67 REMARK 500 LYS A 111 39.49 -157.69 REMARK 500 ASP A 112 46.99 -86.42 REMARK 500 PHE A 216 91.18 -69.50 REMARK 500 PHE A 221 -81.40 -117.24 REMARK 500 THR A 254 -92.82 -91.86 REMARK 500 THR A 256 -6.90 80.12 REMARK 500 REMARK 500 REMARK: NULL DBREF 5XRF A 19 260 UNP J7LCB0 J7LCB0_DEIAC 19 260 SEQRES 1 A 242 GLN LYS SER SER GLU LEU VAL ILE GLY GLY ASN GLU CYS SEQRES 2 A 242 ASP THR ASN GLU HIS ARG PHE LEU ALA ALA PHE PHE THR SEQRES 3 A 242 SER ARG PRO TRP THR PHE GLN CYS ALA GLY THR LEU ILE SEQRES 4 A 242 HIS GLU GLU TRP VAL LEU ALA ALA ALA HIS CYS TYR LYS SEQRES 5 A 242 ARG GLY LEU ASN ILE TYR LEU GLY MET HIS ASN GLN SER SEQRES 6 A 242 ILE GLN PHE ASP ASP GLU GLN ARG ARG TYR ALA ILE GLU SEQRES 7 A 242 GLU HIS TYR TYR ARG CYS ASP GLU LYS LEU THR LYS TRP SEQRES 8 A 242 GLU LYS ASP VAL VAL LEU LEU LYS LEU ASN LYS PRO VAL SEQRES 9 A 242 SER ASN SER THR HIS ILE ALA PRO LEU SER LEU PRO SER SEQRES 10 A 242 SER PRO PRO SER ILE GLY SER VAL CYS ARG VAL MET GLY SEQRES 11 A 242 TRP GLY ILE MET SER SER THR LYS ASP ILE LEU PRO ASP SEQRES 12 A 242 VAL PRO HIS CYS ALA ASN ILE ASN LEU LEU ASN TYR MET SEQRES 13 A 242 GLU CYS VAL ALA HIS TYR PRO ASP VAL PRO GLU THR THR SEQRES 14 A 242 ARG LEU LEU CYS ALA GLY VAL LEU GLU GLY GLY ILE ASP SEQRES 15 A 242 THR CYS ASN GLN ASP SER GLY GLY PRO LEU ILE CYS ASP SEQRES 16 A 242 GLY GLN PHE GLN GLY ILE VAL PHE PHE GLY LYS TYR PRO SEQRES 17 A 242 CYS ALA GLN PRO ASN LYS PRO GLY LEU TYR THR ARG VAL SEQRES 18 A 242 SER ASN TYR ASN ASP TRP ILE GLN ASN ILE ILE ALA GLY SEQRES 19 A 242 LYS THR THR THR ALA CYS PRO PRO HET NAG B 1 27 HET NAG B 2 28 HET BMA B 3 20 HET FUC B 4 10 HET NAG C 1 14 HET NAG C 2 28 HET BMA C 3 21 HET MAN C 4 11 HET FUC C 5 10 HET PEG A 310 17 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 2 NAG 4(C8 H15 N O6) FORMUL 2 BMA 2(C6 H12 O6) FORMUL 2 FUC 2(C6 H12 O5) FORMUL 3 MAN C6 H12 O6 FORMUL 4 PEG C4 H10 O3 FORMUL 5 HOH *254(H2 O) HELIX 1 AA1 THR A 107 LYS A 111 5 5 HELIX 2 AA2 TYR A 173 ALA A 178 1 6 HELIX 3 AA3 TYR A 242 ALA A 251 1 10 SHEET 1 AA1 8 ASN A 29 GLU A 30 0 SHEET 2 AA1 8 HIS A 164 LEU A 171 -1 O CYS A 165 N ASN A 29 SHEET 3 AA1 8 LEU A 189 GLY A 193 -1 O CYS A 191 N LEU A 171 SHEET 4 AA1 8 GLY A 234 ARG A 238 -1 O TYR A 236 N LEU A 190 SHEET 5 AA1 8 GLN A 215 PHE A 222 -1 N PHE A 222 O LEU A 235 SHEET 6 AA1 8 PRO A 209 CYS A 212 -1 N LEU A 210 O GLY A 218 SHEET 7 AA1 8 VAL A 143 GLY A 148 -1 N ARG A 145 O ILE A 211 SHEET 8 AA1 8 HIS A 164 LEU A 171 -1 O ILE A 168 N CYS A 144 SHEET 1 AA2 7 GLN A 90 ARG A 92 0 SHEET 2 AA2 7 ASN A 74 LEU A 77 -1 N ILE A 75 O ARG A 92 SHEET 3 AA2 7 LEU A 39 PHE A 43 -1 N PHE A 43 O ASN A 74 SHEET 4 AA2 7 PHE A 50 HIS A 58 -1 O GLN A 51 N PHE A 42 SHEET 5 AA2 7 TRP A 61 ALA A 65 -1 O LEU A 63 N THR A 55 SHEET 6 AA2 7 VAL A 113 LEU A 118 -1 O LEU A 116 N VAL A 62 SHEET 7 AA2 7 ALA A 94 TYR A 99 -1 N HIS A 98 O LEU A 115 SSBOND 1 CYS A 31 CYS A 165 1555 1555 2.04 SSBOND 2 CYS A 52 CYS A 68 1555 1555 2.05 SSBOND 3 CYS A 102 CYS A 258 1555 1555 2.03 SSBOND 4 CYS A 144 CYS A 212 1555 1555 2.05 SSBOND 5 CYS A 176 CYS A 191 1555 1555 2.04 SSBOND 6 CYS A 202 CYS A 227 1555 1555 2.04 LINK ND2 ASN A 81 C1 NAG B 1 1555 1555 1.42 LINK ND2 ASN A 124 C1 NAG C 1 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.46 LINK O6 NAG B 1 C1 FUC B 4 1555 1555 1.45 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.52 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O6 NAG C 1 C1 FUC C 5 1555 1555 1.44 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.48 LINK O6 BMA C 3 C1 MAN C 4 1555 1555 1.44 CISPEP 1 ARG A 46 PRO A 47 0 -0.10 CISPEP 2 TYR A 225 PRO A 226 0 -1.83 CRYST1 87.481 87.481 104.674 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011431 0.006600 0.000000 0.00000 SCALE2 0.000000 0.013199 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009553 0.00000