HEADER SUGAR BINDING PROTEIN 14-JUN-17 5XSJ TITLE XYLFII-LYTSN COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PERIPLASMIC BINDING PROTEIN/LACI TRANSCRIPTIONAL REGULATOR; COMPND 3 CHAIN: X; COMPND 4 FRAGMENT: UNP RESIDUES 25-326; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: SIGNAL TRANSDUCTION HISTIDINE KINASE, LYTS; COMPND 8 CHAIN: L; COMPND 9 FRAGMENT: UNP RESIDUES 1-134; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM BEIJERINCKII (STRAIN ATCC 51743 / SOURCE 3 NCIMB 8052); SOURCE 4 ORGANISM_TAXID: 290402; SOURCE 5 STRAIN: ATCC 51743 / NCIMB 8052; SOURCE 6 GENE: CBEI_2377; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: CLOSTRIDIUM BEIJERINCKII (STRAIN ATCC 51743 / SOURCE 11 NCIMB 8052); SOURCE 12 ORGANISM_TAXID: 290402; SOURCE 13 STRAIN: ATCC 51743 / NCIMB 8052; SOURCE 14 GENE: CBEI_2378; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TWO COMPONENT SYSTEM, HISTIDINE KINASE, SIGNAL TRANSMISSION ACROSS KEYWDS 2 THE MEMBRANE, D-XYLOSE UPTAKE, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.X.LI,C.Y.WANG,P.ZHANG REVDAT 5 15-SEP-21 5XSJ 1 HETSYN REVDAT 4 29-JUL-20 5XSJ 1 COMPND REMARK HETNAM SITE REVDAT 4 2 1 ATOM REVDAT 3 20-FEB-19 5XSJ 1 SOURCE REVDAT 2 09-AUG-17 5XSJ 1 JRNL REVDAT 1 02-AUG-17 5XSJ 0 JRNL AUTH J.LI,C.WANG,G.YANG,Z.SUN,H.GUO,K.SHAO,Y.GU,W.JIANG,P.ZHANG JRNL TITL MOLECULAR MECHANISM OF ENVIRONMENTAL D-XYLOSE PERCEPTION BY JRNL TITL 2 A XYLFII-LYTS COMPLEX IN BACTERIA JRNL REF PROC. NATL. ACAD. SCI. V. 114 8235 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28716923 JRNL DOI 10.1073/PNAS.1620183114 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 33211 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.1911 - 5.3046 0.99 2406 153 0.1871 0.2246 REMARK 3 2 5.3046 - 4.2114 1.00 2318 149 0.1544 0.1740 REMARK 3 3 4.2114 - 3.6793 1.00 2296 147 0.1602 0.1689 REMARK 3 4 3.6793 - 3.3430 1.00 2282 146 0.1741 0.2032 REMARK 3 5 3.3430 - 3.1035 1.00 2271 146 0.2051 0.2414 REMARK 3 6 3.1035 - 2.9205 1.00 2271 145 0.2166 0.2425 REMARK 3 7 2.9205 - 2.7743 1.00 2262 145 0.2228 0.2562 REMARK 3 8 2.7743 - 2.6536 1.00 2259 145 0.2194 0.2270 REMARK 3 9 2.6536 - 2.5514 1.00 2255 145 0.2311 0.2557 REMARK 3 10 2.5514 - 2.4634 1.00 2271 145 0.2301 0.2489 REMARK 3 11 2.4634 - 2.3864 1.00 2244 144 0.2327 0.2531 REMARK 3 12 2.3864 - 2.3181 1.00 2243 143 0.2394 0.2776 REMARK 3 13 2.3181 - 2.2571 0.91 2042 131 0.2487 0.2839 REMARK 3 14 2.2571 - 2.2021 0.80 1792 115 0.2465 0.2387 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.610 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3122 REMARK 3 ANGLE : 1.058 4209 REMARK 3 CHIRALITY : 0.045 493 REMARK 3 PLANARITY : 0.005 542 REMARK 3 DIHEDRAL : 13.346 1172 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -37.6378 -22.8289 -15.6264 REMARK 3 T TENSOR REMARK 3 T11: 0.2459 T22: 0.2545 REMARK 3 T33: 0.2608 T12: 0.0493 REMARK 3 T13: 0.0252 T23: -0.0133 REMARK 3 L TENSOR REMARK 3 L11: 0.8224 L22: 1.0750 REMARK 3 L33: 1.7421 L12: -0.3386 REMARK 3 L13: 0.7417 L23: -0.9945 REMARK 3 S TENSOR REMARK 3 S11: -0.0387 S12: -0.0467 S13: -0.0362 REMARK 3 S21: 0.1630 S22: 0.0928 S23: -0.0180 REMARK 3 S31: -0.1047 S32: -0.0062 S33: -0.0564 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5XSJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1300004080. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9798 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33221 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM SULFATE, 2.0 M AMMONIUM REMARK 280 SULFATE, 0.1 M MES PH 6.6, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.56650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.56650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 52.84050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 71.84400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 52.84050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 71.84400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 43.56650 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 52.84050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 71.84400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 43.56650 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 52.84050 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 71.84400 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: X, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -105.68100 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -43.56650 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH L 369 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET X -3 REMARK 465 ALA X -2 REMARK 465 ARG X -1 REMARK 465 SER X 0 REMARK 465 ASN X 1 REMARK 465 LEU X 2 REMARK 465 LEU X 3 REMARK 465 ARG X 4 REMARK 465 ASP X 5 REMARK 465 LYS X 6 REMARK 465 LYS X 7 REMARK 465 VAL X 8 REMARK 465 GLU X 9 REMARK 465 LYS X 10 REMARK 465 GLU X 11 REMARK 465 ASN X 273 REMARK 465 LYS X 274 REMARK 465 PHE X 275 REMARK 465 SER X 276 REMARK 465 LYS X 277 REMARK 465 SER X 278 REMARK 465 ASP X 291 REMARK 465 SER X 292 REMARK 465 TYR X 293 REMARK 465 LYS X 294 REMARK 465 ARG X 295 REMARK 465 GLY X 296 REMARK 465 ASP X 297 REMARK 465 ASP X 298 REMARK 465 LYS X 299 REMARK 465 VAL X 300 REMARK 465 GLU X 301 REMARK 465 ASN X 302 REMARK 465 MET L 121 REMARK 465 GLY L 122 REMARK 465 SER L 123 REMARK 465 SER L 124 REMARK 465 HIS L 125 REMARK 465 HIS L 126 REMARK 465 HIS L 127 REMARK 465 HIS L 128 REMARK 465 HIS L 129 REMARK 465 HIS L 130 REMARK 465 SER L 131 REMARK 465 GLN L 132 REMARK 465 GLY L 133 REMARK 465 ASN L 256 REMARK 465 SER L 257 REMARK 465 ILE L 258 REMARK 465 ALA L 259 REMARK 465 TYR L 260 REMARK 465 LYS L 261 REMARK 465 GLU L 262 REMARK 465 LEU L 263 REMARK 465 ASN L 264 REMARK 465 ARG L 265 REMARK 465 ASN L 266 REMARK 465 SER L 267 REMARK 465 SER L 268 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN L 220 O HOH L 301 1.80 REMARK 500 N LEU X 279 O HOH X 601 1.82 REMARK 500 O HOH L 303 O HOH L 361 1.85 REMARK 500 OE1 GLU X 37 O HOH X 602 1.88 REMARK 500 OE1 GLU L 169 O HOH L 302 1.90 REMARK 500 O HOH L 356 O HOH L 359 1.91 REMARK 500 O HOH L 358 O HOH L 364 1.91 REMARK 500 NZ LYS X 252 O HOH X 603 1.91 REMARK 500 NH1 ARG X 43 O HOH X 604 1.93 REMARK 500 O ALA X 179 O HOH X 605 1.93 REMARK 500 CG ASN L 220 O HOH L 301 1.94 REMARK 500 N MET L 135 O HOH L 303 1.97 REMARK 500 O HOH L 338 O HOH L 360 1.98 REMARK 500 O HOH X 765 O HOH X 785 2.00 REMARK 500 O HOH X 653 O HOH X 662 2.01 REMARK 500 OG SER L 166 O HOH L 304 2.02 REMARK 500 O HOH X 738 O HOH X 772 2.02 REMARK 500 O HOH X 750 O HOH X 788 2.03 REMARK 500 CB ASN L 220 O HOH L 301 2.05 REMARK 500 OD1 ASP X 196 O HOH X 606 2.06 REMARK 500 OD1 ASN L 193 O HOH L 305 2.09 REMARK 500 O HOH X 616 O HOH X 769 2.09 REMARK 500 OD2 ASP L 230 O HOH L 306 2.11 REMARK 500 OD1 ASP X 281 O HOH X 607 2.12 REMARK 500 OD1 ASN X 148 O HOH X 608 2.13 REMARK 500 O HOH X 632 O HOH X 691 2.15 REMARK 500 O HOH X 609 O HOH X 611 2.15 REMARK 500 O HOH X 716 O HOH L 365 2.17 REMARK 500 O HOH X 687 O HOH X 776 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH X 618 O HOH X 636 6444 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP X 103 N ASP X 103 CA 0.141 REMARK 500 ASP X 103 CA ASP X 103 C -0.178 REMARK 500 SER X 104 CA SER X 104 CB -0.140 REMARK 500 MET L 135 CG MET L 135 SD 0.163 REMARK 500 MET L 139 CG MET L 139 SD 0.175 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP X 103 19.91 44.84 REMARK 500 SER X 104 140.78 -173.39 REMARK 500 ASP X 178 27.23 47.77 REMARK 500 ARG X 194 -10.15 68.20 REMARK 500 ASN X 220 -170.55 54.88 REMARK 500 TYR X 221 2.37 110.00 REMARK 500 ASP X 231 159.08 79.30 REMARK 500 ASP X 232 44.28 -107.18 REMARK 500 ASN L 162 -23.00 -142.52 REMARK 500 GLU L 254 53.71 -110.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP X 103 SER X 104 149.73 REMARK 500 LEU X 219 ASN X 220 -146.91 REMARK 500 REMARK 500 REMARK: NULL DBREF 5XSJ X 1 302 UNP A6LW07 A6LW07_CLOB8 25 326 DBREF 5XSJ L 135 268 UNP A6LW08 A6LW08_CLOB8 1 134 SEQADV 5XSJ MET X -3 UNP A6LW07 EXPRESSION TAG SEQADV 5XSJ ALA X -2 UNP A6LW07 EXPRESSION TAG SEQADV 5XSJ ARG X -1 UNP A6LW07 EXPRESSION TAG SEQADV 5XSJ SER X 0 UNP A6LW07 EXPRESSION TAG SEQADV 5XSJ MET L 121 UNP A6LW08 EXPRESSION TAG SEQADV 5XSJ GLY L 122 UNP A6LW08 EXPRESSION TAG SEQADV 5XSJ SER L 123 UNP A6LW08 EXPRESSION TAG SEQADV 5XSJ SER L 124 UNP A6LW08 EXPRESSION TAG SEQADV 5XSJ HIS L 125 UNP A6LW08 EXPRESSION TAG SEQADV 5XSJ HIS L 126 UNP A6LW08 EXPRESSION TAG SEQADV 5XSJ HIS L 127 UNP A6LW08 EXPRESSION TAG SEQADV 5XSJ HIS L 128 UNP A6LW08 EXPRESSION TAG SEQADV 5XSJ HIS L 129 UNP A6LW08 EXPRESSION TAG SEQADV 5XSJ HIS L 130 UNP A6LW08 EXPRESSION TAG SEQADV 5XSJ SER L 131 UNP A6LW08 EXPRESSION TAG SEQADV 5XSJ GLN L 132 UNP A6LW08 EXPRESSION TAG SEQADV 5XSJ GLY L 133 UNP A6LW08 EXPRESSION TAG SEQADV 5XSJ SER L 134 UNP A6LW08 EXPRESSION TAG SEQRES 1 X 306 MET ALA ARG SER ASN LEU LEU ARG ASP LYS LYS VAL GLU SEQRES 2 X 306 LYS GLU PRO ILE LYS PRO LYS ILE VAL LEU ILE SER HIS SEQRES 3 X 306 ILE LYS THR ASN PRO TYR TRP LEU ASP ILE LYS ALA GLY SEQRES 4 X 306 ALA GLU ARG ALA ALA LYS GLU ARG GLY ALA VAL VAL GLU SEQRES 5 X 306 PHE LEU GLY PRO THR THR ALA SER THR GLU ASP GLY LEU SEQRES 6 X 306 LYS LEU PHE ASP MET ALA THR SER ALA LYS VAL SER GLY SEQRES 7 X 306 ILE ILE THR TYR VAL GLN GLU GLU GLY GLN TYR LYS LYS SEQRES 8 X 306 LYS ILE ASN SER ALA MET GLU LYS GLY ILE PRO VAL VAL SEQRES 9 X 306 THR ILE ASP SER ASP GLU GLU ASP SER ASN ARG ILE ALA SEQRES 10 X 306 TYR VAL GLY THR ASP ASN VAL LEU ALA GLY GLN VAL ALA SEQRES 11 X 306 GLY LYS GLU MET VAL LYS GLN ILE GLY THR SER GLY ASN SEQRES 12 X 306 VAL ALA ILE VAL MET GLY GLY LYS ASN VAL LYS ASN GLN SEQRES 13 X 306 LYS GLU ARG VAL GLU GLY PHE THR GLN TYR ILE LYS SER SEQRES 14 X 306 ASN SER ASN LEU LYS ILE VAL ASP THR ASP SER SER ASP SEQRES 15 X 306 ALA MET LEU LEU GLU ALA GLU ILE ILE THR ARG LYS ILE SEQRES 16 X 306 LEU ASN ARG ASN ASP ASN ILE ASN ALA LEU PHE CYS THR SEQRES 17 X 306 SER ALA LEU ASP GLY ILE GLY ALA ALA ARG ALA VAL LYS SEQRES 18 X 306 ASP LEU ASN TYR LYS ASP ARG VAL LYS ILE ILE CYS PHE SEQRES 19 X 306 ASP ASP LEU ASP ASP THR LEU SER ASN ILE ARG ASN GLY SEQRES 20 X 306 LEU VAL SER ALA THR ILE VAL GLN LYS SER ASN GLU MET SEQRES 21 X 306 GLY TYR ARG ALA VAL ASN ILE ILE MET ASP LYS ILE GLU SEQRES 22 X 306 GLY LYS SER ASN LYS PHE SER LYS SER LEU ILE ASP VAL SEQRES 23 X 306 ASN VAL ILE ASN LYS SER ASP VAL ASP SER TYR LYS ARG SEQRES 24 X 306 GLY ASP ASP LYS VAL GLU ASN SEQRES 1 L 148 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN GLY SEQRES 2 L 148 SER MET LEU ASN ASN MET LEU ILE THR ASN GLU ILE LYS SEQRES 3 L 148 GLN HIS VAL ASP SER SER LEU ASP ASN PHE ASN GLN TYR SEQRES 4 L 148 ILE LEU ASN GLY THR PRO SER LYS LYS GLU SER TYR ASN SEQRES 5 L 148 ASN GLU VAL ILE LEU ALA LYS GLN LYS ILE GLY ASN LEU SEQRES 6 L 148 LYS LYS ASN SER ASP ASP VAL ASN GLN TYR ILE LEU ARG SEQRES 7 L 148 ASP LEU ASP ASN THR LEU ASP SER TYR ILE GLU SER SER SEQRES 8 L 148 LYS ASN THR ILE SER ALA TYR GLU ASN LYS GLU GLY TYR SEQRES 9 L 148 VAL PHE TYR TYR ASP ASP PHE VAL ALA ALA LYS ASN ILE SEQRES 10 L 148 ALA SER TYR CYS ASP ALA TYR ALA SER THR LEU MET GLN SEQRES 11 L 148 ASN PHE LEU GLU ALA ASN SER ILE ALA TYR LYS GLU LEU SEQRES 12 L 148 ASN ARG ASN SER SER HET XYP X 500 10 HETNAM XYP BETA-D-XYLOPYRANOSE HETSYN XYP BETA-D-XYLOSE; D-XYLOSE; XYLOSE FORMUL 3 XYP C5 H10 O5 FORMUL 4 HOH *262(H2 O) HELIX 1 AA1 ASN X 26 GLY X 44 1 19 HELIX 2 AA2 SER X 56 ALA X 70 1 15 HELIX 3 AA3 TYR X 85 LYS X 95 1 11 HELIX 4 AA4 ASP X 118 GLY X 135 1 18 HELIX 5 AA5 VAL X 149 SER X 167 1 19 HELIX 6 AA6 MET X 180 ASN X 193 1 14 HELIX 7 AA7 LEU X 207 LEU X 219 1 13 HELIX 8 AA8 LEU X 233 ASN X 242 1 10 HELIX 9 AA9 LYS X 252 GLU X 269 1 18 HELIX 10 AB1 MET L 135 GLY L 163 1 29 HELIX 11 AB2 THR L 164 ASN L 188 1 25 HELIX 12 AB3 VAL L 192 ASN L 220 1 29 HELIX 13 AB4 GLY L 223 GLU L 254 1 32 SHEET 1 AA1 5 VAL X 46 LEU X 50 0 SHEET 2 AA1 5 LYS X 16 ILE X 20 1 N LEU X 19 O LEU X 50 SHEET 3 AA1 5 GLY X 74 TYR X 78 1 O ILE X 76 N VAL X 18 SHEET 4 AA1 5 VAL X 99 ILE X 102 1 O VAL X 100 N ILE X 75 SHEET 5 AA1 5 ALA X 113 VAL X 115 1 O VAL X 115 N THR X 101 SHEET 1 AA2 6 LYS X 170 SER X 176 0 SHEET 2 AA2 6 ASN X 139 MET X 144 1 N VAL X 140 O LYS X 170 SHEET 3 AA2 6 ALA X 200 CYS X 203 1 O PHE X 202 N VAL X 143 SHEET 4 AA2 6 LYS X 226 PHE X 230 1 O ILE X 228 N LEU X 201 SHEET 5 AA2 6 ALA X 247 VAL X 250 1 O ILE X 249 N CYS X 229 SHEET 6 AA2 6 ASN X 283 ILE X 285 -1 O ASN X 283 N VAL X 250 CISPEP 1 LYS X 222 ASP X 223 0 -1.04 CRYST1 105.681 143.688 87.133 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009462 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006960 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011477 0.00000