HEADER TRANSFERASE/TRANSFERASE INHIBITOR 15-JUN-17 5XST TITLE NOVEL ORALLY EFFICACIOUS INHIBITORS COMPLEXED WITH PARP1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLY [ADP-RIBOSE] POLYMERASE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 662-1011; COMPND 5 SYNONYM: PARP-1,ADP-RIBOSYLTRANSFERASE DIPHTHERIA TOXIN-LIKE 1,ARTD1, COMPND 6 NAD(+) ADP-RIBOSYLTRANSFERASE 1,ADPRT 1,POLY[ADP-RIBOSE] SYNTHASE 1; COMPND 7 EC: 2.4.2.30; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PARP1, ADPRT, PPOL; SOURCE 6 EXPRESSION_SYSTEM: ENTEROBACTERIA PHAGE L1; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 268588 KEYWDS COMPLEX STRUCTURE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Q.LIU,Y.XU REVDAT 3 16-OCT-24 5XST 1 REMARK REVDAT 2 22-NOV-23 5XST 1 REMARK REVDAT 1 25-APR-18 5XST 0 JRNL AUTH X.CHEN,X.HUAN,Q.LIU,Y.WANG,Q.HE,C.TAN,Y.CHEN,J.DING,Y.XU, JRNL AUTH 2 Z.MIAO,C.YANG JRNL TITL DESIGN AND SYNTHESIS OF JRNL TITL 2 2-(4,5,6,7-TETRAHYDROTHIENOPYRIDIN-2-YL)-BENZOIMIDAZOLE JRNL TITL 3 CARBOXAMIDES AS NOVEL ORALLY EFFICACIOUS JRNL TITL 4 POLY(ADP-RIBOSE)POLYMERASE (PARP) INHIBITORS JRNL REF EUR J MED CHEM V. 145 389 2018 JRNL REFN ISSN 1768-3254 JRNL PMID 29335205 JRNL DOI 10.1016/J.EJMECH.2018.01.018 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575: ??? REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 48842 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1463 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.7150 - 4.9525 0.99 4701 153 0.1866 0.2195 REMARK 3 2 4.9525 - 3.9321 1.00 4748 149 0.1514 0.1741 REMARK 3 3 3.9321 - 3.4353 1.00 4760 144 0.1860 0.2522 REMARK 3 4 3.4353 - 3.1214 1.00 4735 140 0.2211 0.2370 REMARK 3 5 3.1214 - 2.8977 1.00 4754 144 0.2465 0.2584 REMARK 3 6 2.8977 - 2.7269 1.00 4749 145 0.2527 0.2915 REMARK 3 7 2.7269 - 2.5904 1.00 4735 145 0.2627 0.3206 REMARK 3 8 2.5904 - 2.4776 1.00 4721 147 0.2541 0.2794 REMARK 3 9 2.4776 - 2.3823 1.00 4785 150 0.2523 0.3087 REMARK 3 10 2.3823 - 2.3001 1.00 4691 146 0.2713 0.3286 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.700 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2730 REMARK 3 ANGLE : 0.960 3705 REMARK 3 CHIRALITY : 0.058 421 REMARK 3 PLANARITY : 0.006 474 REMARK 3 DIHEDRAL : 7.320 2270 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 27.7607 -14.4397 -17.1141 REMARK 3 T TENSOR REMARK 3 T11: 0.5293 T22: 0.2173 REMARK 3 T33: 0.3433 T12: 0.0508 REMARK 3 T13: 0.0357 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 1.6227 L22: 2.0829 REMARK 3 L33: 1.5111 L12: -0.8678 REMARK 3 L13: -0.2170 L23: -0.1261 REMARK 3 S TENSOR REMARK 3 S11: 0.0889 S12: 0.0762 S13: 0.0471 REMARK 3 S21: 0.0133 S22: -0.1069 S23: -0.2002 REMARK 3 S31: -0.0474 S32: -0.0668 S33: 0.0015 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5XST COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1300004116. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48849 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 39.709 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.320 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.9500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.36 REMARK 200 R MERGE FOR SHELL (I) : 0.80200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.260 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4HHY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 80MM NACL, 1.9M (NH4)2SO4, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 148.53333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 74.26667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 111.40000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 37.13333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 185.66667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 148.53333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 74.26667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 37.13333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 111.40000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 185.66667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 1 CG CD CE NZ REMARK 470 LYS A 3 CG CD CE NZ REMARK 470 LYS A 42 CG CD CE NZ REMARK 470 ARG A 43 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 44 CG CD OE1 NE2 REMARK 470 GLN A 46 CG CD OE1 NE2 REMARK 470 GLN A 57 CD OE1 NE2 REMARK 470 SER A 63 OG REMARK 470 SER A 64 OG REMARK 470 LEU A 69 CG CD1 CD2 REMARK 470 ASP A 70 CG OD1 OD2 REMARK 470 LYS A 87 CG CD CE NZ REMARK 470 LEU A 90 CG CD1 CD2 REMARK 470 ASP A 122 CG OD1 OD2 REMARK 470 ASP A 123 CG OD1 OD2 REMARK 470 LYS A 126 CG CD CE NZ REMARK 470 HIS A 161 CG ND1 CD2 CE1 NE2 REMARK 470 THR A 163 OG1 CG2 REMARK 470 THR A 164 OG1 CG2 REMARK 470 HIS A 165 CG ND1 CD2 CE1 NE2 REMARK 470 ASN A 166 CG OD1 ND2 REMARK 470 ASP A 169 CG OD1 OD2 REMARK 470 LYS A 191 CE NZ REMARK 470 GLN A 192 CG CD OE1 NE2 REMARK 470 GLN A 251 CG CD OE1 NE2 REMARK 470 ASP A 253 CG OD1 OD2 REMARK 470 LYS A 279 CG CD CE NZ REMARK 470 LYS A 292 CG CD CE NZ REMARK 470 ASN A 319 CG OD1 ND2 REMARK 470 LYS A 349 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 183 N LEU A 338 1.96 REMARK 500 OH TYR A 49 OD1 ASP A 105 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 183 CG GLU A 183 CD 0.113 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 180 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 63 99.66 -49.11 REMARK 500 SER A 64 85.19 -68.55 REMARK 500 ASN A 92 16.62 -144.16 REMARK 500 THR A 164 -94.27 -141.20 REMARK 500 ALA A 167 35.69 -90.20 REMARK 500 SER A 275 113.00 -169.19 REMARK 500 ASP A 320 64.19 61.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8E6 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 DBREF 5XST A 1 349 UNP P09874 PARP1_HUMAN 662 1010 SEQADV 5XST SER A 0 UNP P09874 EXPRESSION TAG SEQADV 5XST ALA A 101 UNP P09874 VAL 762 VARIANT SEQRES 1 A 350 SER LYS SER LYS LEU PRO LYS PRO VAL GLN ASP LEU ILE SEQRES 2 A 350 LYS MET ILE PHE ASP VAL GLU SER MET LYS LYS ALA MET SEQRES 3 A 350 VAL GLU TYR GLU ILE ASP LEU GLN LYS MET PRO LEU GLY SEQRES 4 A 350 LYS LEU SER LYS ARG GLN ILE GLN ALA ALA TYR SER ILE SEQRES 5 A 350 LEU SER GLU VAL GLN GLN ALA VAL SER GLN GLY SER SER SEQRES 6 A 350 ASP SER GLN ILE LEU ASP LEU SER ASN ARG PHE TYR THR SEQRES 7 A 350 LEU ILE PRO HIS ASP PHE GLY MET LYS LYS PRO PRO LEU SEQRES 8 A 350 LEU ASN ASN ALA ASP SER VAL GLN ALA LYS ALA GLU MET SEQRES 9 A 350 LEU ASP ASN LEU LEU ASP ILE GLU VAL ALA TYR SER LEU SEQRES 10 A 350 LEU ARG GLY GLY SER ASP ASP SER SER LYS ASP PRO ILE SEQRES 11 A 350 ASP VAL ASN TYR GLU LYS LEU LYS THR ASP ILE LYS VAL SEQRES 12 A 350 VAL ASP ARG ASP SER GLU GLU ALA GLU ILE ILE ARG LYS SEQRES 13 A 350 TYR VAL LYS ASN THR HIS ALA THR THR HIS ASN ALA TYR SEQRES 14 A 350 ASP LEU GLU VAL ILE ASP ILE PHE LYS ILE GLU ARG GLU SEQRES 15 A 350 GLY GLU CYS GLN ARG TYR LYS PRO PHE LYS GLN LEU HIS SEQRES 16 A 350 ASN ARG ARG LEU LEU TRP HIS GLY SER ARG THR THR ASN SEQRES 17 A 350 PHE ALA GLY ILE LEU SER GLN GLY LEU ARG ILE ALA PRO SEQRES 18 A 350 PRO GLU ALA PRO VAL THR GLY TYR MET PHE GLY LYS GLY SEQRES 19 A 350 ILE TYR PHE ALA ASP MET VAL SER LYS SER ALA ASN TYR SEQRES 20 A 350 CYS HIS THR SER GLN GLY ASP PRO ILE GLY LEU ILE LEU SEQRES 21 A 350 LEU GLY GLU VAL ALA LEU GLY ASN MET TYR GLU LEU LYS SEQRES 22 A 350 HIS ALA SER HIS ILE SER LYS LEU PRO LYS GLY LYS HIS SEQRES 23 A 350 SER VAL LYS GLY LEU GLY LYS THR THR PRO ASP PRO SER SEQRES 24 A 350 ALA ASN ILE SER LEU ASP GLY VAL ASP VAL PRO LEU GLY SEQRES 25 A 350 THR GLY ILE SER SER GLY VAL ASN ASP THR SER LEU LEU SEQRES 26 A 350 TYR ASN GLU TYR ILE VAL TYR ASP ILE ALA GLN VAL ASN SEQRES 27 A 350 LEU LYS TYR LEU LEU LYS LEU LYS PHE ASN PHE LYS HET 8E6 A 401 22 HET SO4 A 402 5 HETNAM 8E6 6-FLUORANYL-2-(4,5,6,7-TETRAHYDROTHIENO[3,2-C]PYRIDIN- HETNAM 2 8E6 2-YL)-1~{H}-BENZIMIDAZOLE-4-CARBOXAMIDE HETNAM SO4 SULFATE ION FORMUL 2 8E6 C15 H13 F N4 O S FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *47(H2 O) HELIX 1 AA1 PRO A 5 PHE A 16 1 12 HELIX 2 AA2 ASP A 17 TYR A 28 1 12 HELIX 3 AA3 PRO A 36 LEU A 40 5 5 HELIX 4 AA4 SER A 41 GLY A 62 1 22 HELIX 5 AA5 SER A 64 ILE A 79 1 16 HELIX 6 AA6 ASN A 93 GLY A 119 1 27 HELIX 7 AA7 ASP A 127 LEU A 136 1 10 HELIX 8 AA8 SER A 147 THR A 160 1 14 HELIX 9 AA9 GLY A 182 LYS A 188 1 7 HELIX 10 AB1 PRO A 189 LEU A 193 5 5 HELIX 11 AB2 ARG A 204 THR A 206 5 3 HELIX 12 AB3 ASN A 207 GLY A 215 1 9 HELIX 13 AB4 MET A 239 ASN A 245 1 7 HELIX 14 AB5 TYR A 246 HIS A 248 5 3 HELIX 15 AB6 PRO A 297 ASN A 300 5 4 HELIX 16 AB7 ASP A 332 ALA A 334 5 3 SHEET 1 AA1 5 THR A 138 VAL A 142 0 SHEET 2 AA1 5 TYR A 168 ARG A 180 -1 O LYS A 177 N LYS A 141 SHEET 3 AA1 5 VAL A 336 PHE A 348 -1 O LYS A 345 N GLU A 171 SHEET 4 AA1 5 ILE A 255 ALA A 264 -1 N GLU A 262 O ASN A 337 SHEET 5 AA1 5 ARG A 196 SER A 203 -1 N LEU A 199 O GLY A 261 SHEET 1 AA2 4 ILE A 234 PHE A 236 0 SHEET 2 AA2 4 GLU A 327 VAL A 330 -1 O VAL A 330 N ILE A 234 SHEET 3 AA2 4 SER A 286 GLY A 289 -1 N GLY A 289 O GLU A 327 SHEET 4 AA2 4 MET A 268 LEU A 271 1 N TYR A 269 O SER A 286 SHEET 1 AA3 3 GLY A 313 SER A 315 0 SHEET 2 AA3 3 GLY A 291 PRO A 295 -1 N THR A 294 O ILE A 314 SHEET 3 AA3 3 LEU A 323 TYR A 325 1 O LEU A 324 N THR A 293 SHEET 1 AA4 2 ILE A 301 LEU A 303 0 SHEET 2 AA4 2 VAL A 306 VAL A 308 -1 O VAL A 308 N ILE A 301 SSBOND 1 CYS A 184 CYS A 184 1555 8555 2.06 SITE 1 AC1 13 GLU A 102 ASP A 105 HIS A 201 GLY A 202 SITE 2 AC1 13 GLY A 227 TYR A 228 TYR A 235 PHE A 236 SITE 3 AC1 13 ALA A 237 LYS A 242 SER A 243 TYR A 246 SITE 4 AC1 13 GLU A 327 SITE 1 AC2 5 ARG A 204 THR A 205 THR A 206 HOH A 501 SITE 2 AC2 5 HOH A 530 CRYST1 93.980 93.980 222.800 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010641 0.006143 0.000000 0.00000 SCALE2 0.000000 0.012287 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004488 0.00000