HEADER TRANSFERASE 19-JUN-17 5XTK TITLE CRYSTAL STRUCTURE OF XANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE FROM TITLE 2 YERSINIA PESTIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: XANTHINE PHOSPHORIBOSYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: XANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE,XGPRT; COMPND 5 EC: 2.4.2.22; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PESTIS; SOURCE 3 ORGANISM_TAXID: 632; SOURCE 4 GENE: GPT, YPO3225, Y0963, YP_0708; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: LIC-PET30A KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.C.PAVITHRA,U.A.RAMAGOPAL REVDAT 4 22-NOV-23 5XTK 1 REMARK REVDAT 3 23-OCT-19 5XTK 1 REMARK REVDAT 2 16-OCT-19 5XTK 1 REMARK REVDAT 1 20-JUN-18 5XTK 0 JRNL AUTH G.C.PAVITHRA,U.A.RAMAGOPAL JRNL TITL CRYSTAL STRUCTURE OF XANTHINE-GUANINE JRNL TITL 2 PHOSPHORIBOSYLTRANSFERASE FROM YERSINIA PESTIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 66.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 37024 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1931 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.74 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.78 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2514 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.1870 REMARK 3 BIN FREE R VALUE SET COUNT : 118 REMARK 3 BIN FREE R VALUE : 0.2230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2337 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 178 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.20000 REMARK 3 B22 (A**2) : -0.20000 REMARK 3 B33 (A**2) : 0.41000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.093 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.093 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.055 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.328 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2506 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2386 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3436 ; 1.840 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5505 ; 0.795 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 320 ; 6.495 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 108 ;33.039 ;23.241 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 412 ;13.421 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;20.956 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 393 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2794 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 523 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1232 ; 1.294 ; 1.620 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1231 ; 1.267 ; 1.617 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1547 ; 2.139 ; 2.416 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1548 ; 2.141 ; 2.418 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1274 ; 1.749 ; 1.892 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1275 ; 1.749 ; 1.894 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1883 ; 2.817 ; 2.737 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2762 ; 4.160 ;19.020 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2718 ; 4.090 ;18.748 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 475 REMARK 3 ORIGIN FOR THE GROUP (A): -13.7236 -28.1016 -15.1247 REMARK 3 T TENSOR REMARK 3 T11: 0.0457 T22: 0.0281 REMARK 3 T33: 0.0234 T12: 0.0178 REMARK 3 T13: -0.0137 T23: 0.0090 REMARK 3 L TENSOR REMARK 3 L11: 0.1169 L22: 0.2086 REMARK 3 L33: 0.2202 L12: -0.0434 REMARK 3 L13: 0.1354 L23: -0.0867 REMARK 3 S TENSOR REMARK 3 S11: 0.0341 S12: -0.0247 S13: -0.0450 REMARK 3 S21: -0.0238 S22: 0.0237 S23: 0.0440 REMARK 3 S31: -0.0045 S32: -0.0623 S33: -0.0577 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 283 REMARK 3 ORIGIN FOR THE GROUP (A): 6.9307 -31.7346 -19.5378 REMARK 3 T TENSOR REMARK 3 T11: 0.0371 T22: 0.0196 REMARK 3 T33: 0.0208 T12: 0.0133 REMARK 3 T13: 0.0096 T23: -0.0096 REMARK 3 L TENSOR REMARK 3 L11: 0.0468 L22: 0.3812 REMARK 3 L33: 0.2930 L12: 0.0145 REMARK 3 L13: 0.0580 L23: -0.0330 REMARK 3 S TENSOR REMARK 3 S11: 0.0274 S12: 0.0202 S13: -0.0134 REMARK 3 S21: -0.0599 S22: 0.0094 S23: -0.0711 REMARK 3 S31: 0.0001 S32: 0.0252 S33: -0.0368 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5XTK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1300004158. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.074 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39181 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.740 REMARK 200 RESOLUTION RANGE LOW (A) : 66.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 14.40 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : 0.05400 REMARK 200 FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 10.50 REMARK 200 R MERGE FOR SHELL (I) : 0.58400 REMARK 200 R SYM FOR SHELL (I) : 0.49100 REMARK 200 FOR SHELL : 3.740 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1NUL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M LITHIUM SULPHATE, 25% PEG 3350, REMARK 280 0.1M HEPES PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.68950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 124.03425 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 41.34475 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 82.68950 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 41.34475 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 124.03425 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -99.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 461 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 152 REMARK 465 MET B 1 REMARK 465 LYS B 152 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 3 CD OE1 OE2 REMARK 470 TYR A 63 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 72 CG CD CE NZ REMARK 470 GLU A 78 CG CD OE1 OE2 REMARK 470 LYS B 4 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 140 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 66 -112.26 54.40 REMARK 500 ASP A 92 -76.20 -103.30 REMARK 500 ASP A 92 -76.20 -113.40 REMARK 500 ASP B 66 -125.90 48.04 REMARK 500 LYS B 75 138.65 -170.70 REMARK 500 ASP B 92 -70.01 -117.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 487 DISTANCE = 6.26 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5GP A 302 DBREF 5XTK A 1 152 UNP Q8ZC05 XGPT_YERPE 1 152 DBREF 5XTK B 1 152 UNP Q8ZC05 XGPT_YERPE 1 152 SEQRES 1 A 152 MET ASN GLU LYS TYR VAL VAL THR TRP ASP MET LEU GLN SEQRES 2 A 152 ILE HIS ALA ARG LYS LEU ALA GLN ARG LEU LEU PRO ALA SEQRES 3 A 152 GLU GLN TRP LYS GLY ILE ILE ALA VAL SER ARG GLY GLY SEQRES 4 A 152 LEU VAL PRO ALA GLY ILE LEU ALA ARG GLU LEU GLY ILE SEQRES 5 A 152 ARG TYR VAL ASP THR VAL CYS ILE SER SER TYR ASP HIS SEQRES 6 A 152 ASP ASN GLN ARG ASP LEU LYS VAL LEU LYS ARG ALA GLU SEQRES 7 A 152 GLY ASP GLY GLU GLY PHE ILE VAL ILE ASP ASP LEU VAL SEQRES 8 A 152 ASP THR GLY GLY THR ALA THR ALA ILE ARG GLU MET TYR SEQRES 9 A 152 PRO LYS ALA HIS PHE VAL THR ILE PHE ALA LYS PRO ALA SEQRES 10 A 152 GLY ARG PRO LEU VAL ASP ASP TYR VAL VAL ASP ILE PRO SEQRES 11 A 152 GLN ASN THR TRP ILE GLU GLN PRO TRP ASP MET ALA VAL SEQRES 12 A 152 THR PHE VAL ALA PRO LEU SER GLY LYS SEQRES 1 B 152 MET ASN GLU LYS TYR VAL VAL THR TRP ASP MET LEU GLN SEQRES 2 B 152 ILE HIS ALA ARG LYS LEU ALA GLN ARG LEU LEU PRO ALA SEQRES 3 B 152 GLU GLN TRP LYS GLY ILE ILE ALA VAL SER ARG GLY GLY SEQRES 4 B 152 LEU VAL PRO ALA GLY ILE LEU ALA ARG GLU LEU GLY ILE SEQRES 5 B 152 ARG TYR VAL ASP THR VAL CYS ILE SER SER TYR ASP HIS SEQRES 6 B 152 ASP ASN GLN ARG ASP LEU LYS VAL LEU LYS ARG ALA GLU SEQRES 7 B 152 GLY ASP GLY GLU GLY PHE ILE VAL ILE ASP ASP LEU VAL SEQRES 8 B 152 ASP THR GLY GLY THR ALA THR ALA ILE ARG GLU MET TYR SEQRES 9 B 152 PRO LYS ALA HIS PHE VAL THR ILE PHE ALA LYS PRO ALA SEQRES 10 B 152 GLY ARG PRO LEU VAL ASP ASP TYR VAL VAL ASP ILE PRO SEQRES 11 B 152 GLN ASN THR TRP ILE GLU GLN PRO TRP ASP MET ALA VAL SEQRES 12 B 152 THR PHE VAL ALA PRO LEU SER GLY LYS HET SO4 A 301 5 HET 5GP A 302 24 HETNAM SO4 SULFATE ION HETNAM 5GP GUANOSINE-5'-MONOPHOSPHATE FORMUL 3 SO4 O4 S 2- FORMUL 4 5GP C10 H14 N5 O8 P FORMUL 5 HOH *178(H2 O) HELIX 1 AA1 THR A 8 LEU A 23 1 16 HELIX 2 AA2 PRO A 25 TRP A 29 5 5 HELIX 3 AA3 GLY A 39 GLY A 51 1 13 HELIX 4 AA4 GLY A 94 TYR A 104 1 11 HELIX 5 AA5 GLY A 118 VAL A 122 5 5 HELIX 6 AA6 GLN A 137 MET A 141 5 5 HELIX 7 AA7 THR B 8 LEU B 24 1 17 HELIX 8 AA8 PRO B 25 TRP B 29 5 5 HELIX 9 AA9 GLY B 39 GLY B 51 1 13 HELIX 10 AB1 GLY B 94 TYR B 104 1 11 HELIX 11 AB2 GLY B 118 VAL B 122 5 5 HELIX 12 AB3 GLN B 137 MET B 141 5 5 SHEET 1 AA1 2 TYR A 5 VAL A 6 0 SHEET 2 AA1 2 ILE A 135 GLU A 136 1 O GLU A 136 N TYR A 5 SHEET 1 AA2 6 GLN A 68 LYS A 75 0 SHEET 2 AA2 6 VAL A 55 HIS A 65 -1 N HIS A 65 O GLN A 68 SHEET 3 AA2 6 GLY A 31 SER A 36 1 N ALA A 34 O ASP A 56 SHEET 4 AA2 6 PHE A 84 VAL A 91 1 O ILE A 85 N ILE A 33 SHEET 5 AA2 6 HIS A 108 ALA A 114 1 O VAL A 110 N VAL A 86 SHEET 6 AA2 6 VAL A 127 ASP A 128 1 O VAL A 127 N ILE A 112 SHEET 1 AA3 2 TYR B 5 VAL B 6 0 SHEET 2 AA3 2 ILE B 135 GLU B 136 1 O GLU B 136 N TYR B 5 SHEET 1 AA4 6 GLN B 68 ARG B 76 0 SHEET 2 AA4 6 VAL B 55 HIS B 65 -1 N SER B 61 O LYS B 72 SHEET 3 AA4 6 GLY B 31 SER B 36 1 N ALA B 34 O ASP B 56 SHEET 4 AA4 6 PHE B 84 VAL B 91 1 O ILE B 85 N ILE B 33 SHEET 5 AA4 6 HIS B 108 ALA B 114 1 O VAL B 110 N VAL B 86 SHEET 6 AA4 6 ASP B 124 ASP B 128 1 O VAL B 127 N ILE B 112 CISPEP 1 LEU A 24 PRO A 25 0 3.11 CISPEP 2 SER A 36 ARG A 37 0 1.20 CISPEP 3 LEU B 24 PRO B 25 0 0.31 CISPEP 4 SER B 36 ARG B 37 0 -0.30 SITE 1 AC1 7 SER A 36 ARG A 37 GLY A 38 HOH A 403 SITE 2 AC1 7 HOH A 455 HOH A 468 ARG B 53 SITE 1 AC2 16 ARG A 69 LEU A 90 ASP A 92 THR A 93 SITE 2 AC2 16 GLY A 94 GLY A 95 THR A 96 LYS A 115 SITE 3 AC2 16 TRP A 134 ILE A 135 HOH A 402 HOH A 405 SITE 4 AC2 16 HOH A 410 HOH A 412 HOH A 426 HOH A 432 CRYST1 66.557 66.557 165.379 90.00 90.00 90.00 P 43 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015025 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015025 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006047 0.00000