HEADER NUCLEAR PROTEIN 27-JUN-17 5XV8 TITLE SOLUTION STRUCTURE OF THE COMPLEX BETWEEN UVSSA ACIDIC REGION AND TITLE 2 TFIIH P62 PH DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: UV-STIMULATED SCAFFOLD PROTEIN A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 390-434; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: THE THREE AMINO ACIDS (GSM) AT THE N TERMINUS DO NOT COMPND 7 DERIVE FROM UVSSA.; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 1; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: UNP RESIDUES 2-108; COMPND 12 SYNONYM: BASIC TRANSCRIPTION FACTOR 2 62 KDA SUBUNIT,BTF2 P62,GENERAL COMPND 13 TRANSCRIPTION FACTOR IIH POLYPEPTIDE 1,TFIIH BASAL TRANSCRIPTION COMPND 14 FACTOR COMPLEX P62 SUBUNIT; COMPND 15 ENGINEERED: YES; COMPND 16 OTHER_DETAILS: THE TWO AMINO ACIDS (GS) AT THE N TERMINUS DO NOT COMPND 17 DERIVE FROM TFIIH P62. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UVSSA, KIAA1530; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: GTF2H1, BTF2; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNA REPAIR FACTOR, GENERAL TRANSCRIPTION FACTOR, NUCLEOTIDE EXCISION KEYWDS 2 REPAIR, TRANSCRIPTION-COUPLED REPAIR, NUCLEAR PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.OKUDA,Y.NISHIMURA REVDAT 2 27-DEC-17 5XV8 1 JRNL REVDAT 1 08-NOV-17 5XV8 0 JRNL AUTH M.OKUDA,Y.NAKAZAWA,C.GUO,T.OGI,Y.NISHIMURA JRNL TITL COMMON TFIIH RECRUITMENT MECHANISM IN GLOBAL GENOME AND JRNL TITL 2 TRANSCRIPTION-COUPLED REPAIR SUBPATHWAYS JRNL REF NUCLEIC ACIDS RES. V. 45 13043 2017 JRNL REFN ESSN 1362-4962 JRNL PMID 29069470 JRNL DOI 10.1093/NAR/GKX970 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5XV8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1300004217. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 305 REMARK 210 PH : 6.80 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : 760 MMHG REMARK 210 SAMPLE CONTENTS : 0.40 MM [U-99% 13C; U-99% 15N] REMARK 210 UVSSA, 0.48 MM TFIIH P62, 90% REMARK 210 H2O/10% D2O; 0.40 MM [U-99% 13C; REMARK 210 U-99% 15N] UVSSA, 0.48 MM TFIIH REMARK 210 P62, 100% D2O; 0.40 MM [U-99% REMARK 210 13C; U-99% 15N] TFIIH P62, 0.48 REMARK 210 MM UVSSA, 90% H2O/10% D2O; 0.40 REMARK 210 MM [U-99% 13C; U-99% 15N] TFIIH REMARK 210 P62, 0.48 MM UVSSA, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D HNCO; 3D HBHA(CO)NH; 3D C(CO) REMARK 210 NH; 3D H(CCO)NH; 3D HNHB; 3D 1H- REMARK 210 15N NOESY; 2D 1H-13C HSQC; 2D 1H- REMARK 210 13C HSQC AROMATIC; 3D 1H-13C REMARK 210 NOESY; 3D HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 950 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCEIII REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRDRAW, NMRVIEW, X-PLOR NIH, REMARK 210 PROCHECKNMR, MOLMOL REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 387 REMARK 465 SER A 388 REMARK 465 MET A 389 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HB3 ASP A 407 HE2 LYS B 60 1.05 REMARK 500 OE1 GLU A 413 HZ3 LYS B 104 1.51 REMARK 500 H VAL A 411 O GLN B 53 1.53 REMARK 500 H VAL A 409 O ILE B 55 1.56 REMARK 500 OD1 ASP B 90 HZ3 LYS B 93 1.56 REMARK 500 HZ2 LYS B 51 O ASN B 108 1.56 REMARK 500 OD2 ASP A 404 HZ3 LYS B 60 1.56 REMARK 500 OE1 GLU A 415 HH12 ARG B 105 1.59 REMARK 500 OE1 GLU A 410 HG CYS B 52 1.59 REMARK 500 OE1 GLU B 6 HH21 ARG B 30 1.59 REMARK 500 OE2 GLU A 415 HH22 ARG B 105 1.59 REMARK 500 OE2 GLU A 401 HZ3 LYS B 62 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 391 -68.86 74.48 REMARK 500 1 ALA A 395 48.02 -80.02 REMARK 500 1 ALA A 399 17.66 -163.64 REMARK 500 1 GLU A 400 11.86 -150.44 REMARK 500 1 GLU A 415 -74.20 65.09 REMARK 500 1 HIS A 420 -148.35 52.75 REMARK 500 1 PRO A 422 105.32 -52.94 REMARK 500 1 LEU A 425 54.34 -115.45 REMARK 500 1 PRO A 427 33.80 -84.22 REMARK 500 1 ALA B 2 -99.03 60.03 REMARK 500 1 GLU B 7 108.15 -46.74 REMARK 500 1 LYS B 14 76.04 48.72 REMARK 500 2 ASP A 398 68.89 -159.23 REMARK 500 2 GLU A 400 -143.48 -84.61 REMARK 500 2 ASP A 405 27.27 -76.39 REMARK 500 2 ASP A 407 68.23 69.07 REMARK 500 2 GLU A 415 -70.85 61.09 REMARK 500 2 TYR A 417 -55.65 -148.07 REMARK 500 2 GLU A 418 152.65 65.80 REMARK 500 2 PRO A 419 72.14 -65.13 REMARK 500 2 HIS A 420 97.06 -163.97 REMARK 500 2 ALA A 433 -41.49 -169.14 REMARK 500 2 ALA B 2 72.50 178.90 REMARK 500 2 THR B 3 -78.57 -153.59 REMARK 500 2 SER B 4 -58.74 -154.62 REMARK 500 2 LYS B 106 -61.61 -153.59 REMARK 500 3 ARG A 391 -14.90 78.59 REMARK 500 3 THR A 393 75.21 63.05 REMARK 500 3 ALA A 399 18.06 -161.76 REMARK 500 3 GLU A 400 -167.46 -106.81 REMARK 500 3 GLU A 401 97.02 70.77 REMARK 500 3 ASP A 402 -4.72 -58.33 REMARK 500 3 GLU A 403 106.32 73.51 REMARK 500 3 ASP A 407 67.40 61.40 REMARK 500 3 GLU A 415 -73.52 63.63 REMARK 500 3 HIS A 420 -150.88 36.82 REMARK 500 3 ILE A 421 -64.85 -146.68 REMARK 500 3 HIS A 424 26.13 -140.56 REMARK 500 3 PRO A 427 30.56 -81.38 REMARK 500 3 ALA B 107 39.99 -83.81 REMARK 500 4 ARG A 391 -66.73 -101.84 REMARK 500 4 ARG A 392 92.06 -67.18 REMARK 500 4 LEU A 396 44.49 -104.21 REMARK 500 4 GLU A 400 -156.75 -176.71 REMARK 500 4 GLU A 401 53.37 164.56 REMARK 500 4 GLU A 403 34.59 -142.09 REMARK 500 4 ASP A 407 62.56 75.77 REMARK 500 4 GLU A 415 -73.31 66.00 REMARK 500 4 HIS A 424 20.57 -151.84 REMARK 500 4 PRO A 427 45.44 -80.14 REMARK 500 REMARK 500 THIS ENTRY HAS 282 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36101 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF THE COMPLEX BETWEEN UVSSA ACIDIC REGION AND REMARK 900 TFIIH P62 PH DOMAIN DBREF 5XV8 A 390 434 UNP Q2YD98 UVSSA_HUMAN 390 434 DBREF 5XV8 B 2 108 UNP P32780 TF2H1_HUMAN 2 108 SEQADV 5XV8 GLY A 387 UNP Q2YD98 EXPRESSION TAG SEQADV 5XV8 SER A 388 UNP Q2YD98 EXPRESSION TAG SEQADV 5XV8 MET A 389 UNP Q2YD98 EXPRESSION TAG SEQADV 5XV8 GLY B -1 UNP P32780 EXPRESSION TAG SEQADV 5XV8 SER B 0 UNP P32780 EXPRESSION TAG SEQADV 5XV8 MET B 1 UNP P32780 EXPRESSION TAG SEQRES 1 A 48 GLY SER MET ARG ARG ARG THR GLU ALA LEU GLY ASP ALA SEQRES 2 A 48 GLU GLU ASP GLU ASP ASP GLU ASP PHE VAL GLU VAL PRO SEQRES 3 A 48 GLU LYS GLU GLY TYR GLU PRO HIS ILE PRO ASP HIS LEU SEQRES 4 A 48 ARG PRO GLU TYR GLY LEU GLU ALA ALA SEQRES 1 B 110 GLY SER MET ALA THR SER SER GLU GLU VAL LEU LEU ILE SEQRES 2 B 110 VAL LYS LYS VAL ARG GLN LYS LYS GLN ASP GLY ALA LEU SEQRES 3 B 110 TYR LEU MET ALA GLU ARG ILE ALA TRP ALA PRO GLU GLY SEQRES 4 B 110 LYS ASP ARG PHE THR ILE SER HIS MET TYR ALA ASP ILE SEQRES 5 B 110 LYS CYS GLN LYS ILE SER PRO GLU GLY LYS ALA LYS ILE SEQRES 6 B 110 GLN LEU GLN LEU VAL LEU HIS ALA GLY ASP THR THR ASN SEQRES 7 B 110 PHE HIS PHE SER ASN GLU SER THR ALA VAL LYS GLU ARG SEQRES 8 B 110 ASP ALA VAL LYS ASP LEU LEU GLN GLN LEU LEU PRO LYS SEQRES 9 B 110 PHE LYS ARG LYS ALA ASN HELIX 1 1 TYR B 47 ASP B 49 5 3 HELIX 2 2 THR B 84 LYS B 104 1 21 SHEET 1 A 8 THR B 42 MET B 46 0 SHEET 2 A 8 ARG B 30 ALA B 34 -1 N ILE B 31 O HIS B 45 SHEET 3 A 8 ASP B 21 MET B 27 -1 N ALA B 23 O ALA B 34 SHEET 4 A 8 LEU B 9 ARG B 16 -1 N VAL B 12 O LEU B 24 SHEET 5 A 8 ASP B 73 PHE B 79 -1 O HIS B 78 N ARG B 16 SHEET 6 A 8 ILE B 63 LEU B 69 -1 N LEU B 65 O PHE B 77 SHEET 7 A 8 ILE B 50 SER B 56 -1 N CYS B 52 O VAL B 68 SHEET 8 A 8 VAL A 409 PRO A 412 -1 N VAL A 409 O ILE B 55 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1