HEADER HYDROLASE 27-JUN-17 5XVE TITLE CRYSTAL STRUCTURE OF HUMAN USP2 C276S MUTANT IN COMPLEX WITH UBIQUITIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 258-605; COMPND 5 SYNONYM: 41 KDA UBIQUITIN-SPECIFIC PROTEASE,DEUBIQUITINATING ENZYME COMPND 6 2,UBIQUITIN THIOESTERASE 2,UBIQUITIN-SPECIFIC-PROCESSING PROTEASE 2; COMPND 7 EC: 3.4.19.12; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: UBIQUITIN-40S RIBOSOMAL PROTEIN S27A; COMPND 12 CHAIN: B; COMPND 13 FRAGMENT: UNP RESIDUES 1-76; COMPND 14 SYNONYM: UBIQUITIN CARBOXYL EXTENSION PROTEIN 80 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: USP2, UBP41; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA (DE3); SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 11 ORGANISM_COMMON: BOVINE; SOURCE 12 ORGANISM_TAXID: 9913 KEYWDS UBIQUITIN SPECIFIC PROTEASE FOR ANTICANCER TARGET, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.Y.CHOU,H.C.TANG REVDAT 2 22-NOV-23 5XVE 1 REMARK REVDAT 1 28-FEB-18 5XVE 0 JRNL AUTH S.J.CHUANG,S.C.CHENG,H.C.TANG,C.Y.SUN,C.Y.CHOU JRNL TITL 6-THIOGUANINE IS A NONCOMPETITIVE AND SLOW BINDING INHIBITOR JRNL TITL 2 OF HUMAN DEUBIQUITINATING PROTEASE USP2 JRNL REF SCI REP V. 8 3102 2018 JRNL REFN ESSN 2045-2322 JRNL PMID 29449607 JRNL DOI 10.1038/S41598-018-21476-W REMARK 2 REMARK 2 RESOLUTION. 1.24 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.24 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 102800 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.148 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.164 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 5587 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.24 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 14652 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.04 REMARK 3 BIN R VALUE (WORKING SET) : 0.1590 REMARK 3 BIN FREE R VALUE SET COUNT : 815 REMARK 3 BIN FREE R VALUE : 0.1820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3284 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 356 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.64000 REMARK 3 B22 (A**2) : 0.31000 REMARK 3 B33 (A**2) : 0.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.18000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.044 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.040 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.022 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.051 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3494 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3335 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4746 ; 1.246 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7687 ; 0.877 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 447 ; 6.019 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 177 ;29.229 ;23.164 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 646 ;11.958 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;16.265 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 522 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4001 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 861 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1675 ; 0.770 ; 1.332 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1674 ; 0.769 ; 1.332 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2102 ; 1.013 ; 2.003 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2103 ; 1.013 ; 2.003 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1819 ; 0.927 ; 1.528 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1819 ; 0.927 ; 1.528 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2624 ; 1.135 ; 2.228 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4196 ; 2.003 ;11.826 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3992 ; 1.665 ;11.253 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6829 ; 1.173 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 66 ;20.770 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 7033 ; 5.003 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5XVE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1300004194. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13C1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 102971 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.240 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.03400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.24 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.24100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2HD5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 21% PEG3350, 8% TACSIMATE (PH8.0), REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 51.23650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.00550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 51.23650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.00550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 258 REMARK 465 ASN A 259 REMARK 465 SER A 260 REMARK 465 LYS A 261 REMARK 465 SER A 262 REMARK 465 ARG A 379 REMARK 465 PRO A 380 REMARK 465 LYS A 381 REMARK 465 SER A 382 REMARK 465 ASN A 383 REMARK 465 PRO A 384 REMARK 465 SER A 600 REMARK 465 PRO A 601 REMARK 465 PRO A 602 REMARK 465 SER A 603 REMARK 465 ARG A 604 REMARK 465 MET A 605 REMARK 465 LEU A 606 REMARK 465 GLU A 607 REMARK 465 HIS A 608 REMARK 465 HIS A 609 REMARK 465 HIS A 610 REMARK 465 HIS A 611 REMARK 465 HIS A 612 REMARK 465 HIS A 613 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 575 O HOH A 801 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 511 O HOH A 1029 4756 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 308 98.67 -69.87 REMARK 500 TYR A 353 49.42 -140.33 REMARK 500 ASP A 575 -119.31 57.86 REMARK 500 THR B 7 -157.05 -89.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1077 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A1078 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH A1079 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH A1080 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH A1081 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH A1082 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH A1083 DISTANCE = 6.46 ANGSTROMS REMARK 525 HOH A1084 DISTANCE = 6.89 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 425 SG REMARK 620 2 CYS A 428 SG 108.8 REMARK 620 3 CYS A 476 SG 109.2 106.7 REMARK 620 4 CYS A 479 SG 110.3 108.9 112.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 701 DBREF 5XVE A 258 605 UNP O75604 UBP2_HUMAN 258 605 DBREF 5XVE B 1 76 UNP P62992 RS27A_BOVIN 1 76 SEQADV 5XVE SER A 276 UNP O75604 CYS 276 CONFLICT SEQADV 5XVE LEU A 606 UNP O75604 EXPRESSION TAG SEQADV 5XVE GLU A 607 UNP O75604 EXPRESSION TAG SEQADV 5XVE HIS A 608 UNP O75604 EXPRESSION TAG SEQADV 5XVE HIS A 609 UNP O75604 EXPRESSION TAG SEQADV 5XVE HIS A 610 UNP O75604 EXPRESSION TAG SEQADV 5XVE HIS A 611 UNP O75604 EXPRESSION TAG SEQADV 5XVE HIS A 612 UNP O75604 EXPRESSION TAG SEQADV 5XVE HIS A 613 UNP O75604 EXPRESSION TAG SEQRES 1 A 356 MET ASN SER LYS SER ALA GLN GLY LEU ALA GLY LEU ARG SEQRES 2 A 356 ASN LEU GLY ASN THR SER PHE MET ASN SER ILE LEU GLN SEQRES 3 A 356 CYS LEU SER ASN THR ARG GLU LEU ARG ASP TYR CYS LEU SEQRES 4 A 356 GLN ARG LEU TYR MET ARG ASP LEU HIS HIS GLY SER ASN SEQRES 5 A 356 ALA HIS THR ALA LEU VAL GLU GLU PHE ALA LYS LEU ILE SEQRES 6 A 356 GLN THR ILE TRP THR SER SER PRO ASN ASP VAL VAL SER SEQRES 7 A 356 PRO SER GLU PHE LYS THR GLN ILE GLN ARG TYR ALA PRO SEQRES 8 A 356 ARG PHE VAL GLY TYR ASN GLN GLN ASP ALA GLN GLU PHE SEQRES 9 A 356 LEU ARG PHE LEU LEU ASP GLY LEU HIS ASN GLU VAL ASN SEQRES 10 A 356 ARG VAL THR LEU ARG PRO LYS SER ASN PRO GLU ASN LEU SEQRES 11 A 356 ASP HIS LEU PRO ASP ASP GLU LYS GLY ARG GLN MET TRP SEQRES 12 A 356 ARG LYS TYR LEU GLU ARG GLU ASP SER ARG ILE GLY ASP SEQRES 13 A 356 LEU PHE VAL GLY GLN LEU LYS SER SER LEU THR CYS THR SEQRES 14 A 356 ASP CYS GLY TYR CYS SER THR VAL PHE ASP PRO PHE TRP SEQRES 15 A 356 ASP LEU SER LEU PRO ILE ALA LYS ARG GLY TYR PRO GLU SEQRES 16 A 356 VAL THR LEU MET ASP CYS MET ARG LEU PHE THR LYS GLU SEQRES 17 A 356 ASP VAL LEU ASP GLY ASP GLU LYS PRO THR CYS CYS ARG SEQRES 18 A 356 CYS ARG GLY ARG LYS ARG CYS ILE LYS LYS PHE SER ILE SEQRES 19 A 356 GLN ARG PHE PRO LYS ILE LEU VAL LEU HIS LEU LYS ARG SEQRES 20 A 356 PHE SER GLU SER ARG ILE ARG THR SER LYS LEU THR THR SEQRES 21 A 356 PHE VAL ASN PHE PRO LEU ARG ASP LEU ASP LEU ARG GLU SEQRES 22 A 356 PHE ALA SER GLU ASN THR ASN HIS ALA VAL TYR ASN LEU SEQRES 23 A 356 TYR ALA VAL SER ASN HIS SER GLY THR THR MET GLY GLY SEQRES 24 A 356 HIS TYR THR ALA TYR CYS ARG SER PRO GLY THR GLY GLU SEQRES 25 A 356 TRP HIS THR PHE ASN ASP SER SER VAL THR PRO MET SER SEQRES 26 A 356 SER SER GLN VAL ARG THR SER ASP ALA TYR LEU LEU PHE SEQRES 27 A 356 TYR GLU LEU ALA SER PRO PRO SER ARG MET LEU GLU HIS SEQRES 28 A 356 HIS HIS HIS HIS HIS SEQRES 1 B 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 B 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 B 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 B 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 B 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 B 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY HET ZN A 701 1 HETNAM ZN ZINC ION FORMUL 3 ZN ZN 2+ FORMUL 4 HOH *356(H2 O) HELIX 1 AA1 THR A 275 ASN A 287 1 13 HELIX 2 AA2 THR A 288 GLN A 297 1 10 HELIX 3 AA3 ARG A 298 ASP A 303 5 6 HELIX 4 AA4 HIS A 311 TRP A 326 1 16 HELIX 5 AA5 PRO A 336 ALA A 347 1 12 HELIX 6 AA6 PRO A 348 VAL A 351 5 4 HELIX 7 AA7 ALA A 358 ASN A 374 1 17 HELIX 8 AA8 PRO A 391 GLU A 405 1 15 HELIX 9 AA9 SER A 409 VAL A 416 1 8 HELIX 10 AB1 LEU A 455 LYS A 464 1 10 HELIX 11 AB2 ASP A 469 LYS A 473 5 5 HELIX 12 AB3 ARG A 529 ALA A 532 5 4 HELIX 13 AB4 SER A 582 VAL A 586 5 5 HELIX 14 AB5 THR B 22 GLY B 35 1 14 HELIX 15 AB6 PRO B 37 GLN B 41 5 5 HELIX 16 AB7 THR B 55 ASN B 60 5 6 SHEET 1 AA1 2 GLY A 268 LEU A 269 0 SHEET 2 AA1 2 VAL A 333 VAL A 334 1 O VAL A 334 N GLY A 268 SHEET 1 AA2 2 GLN A 356 ASP A 357 0 SHEET 2 AA2 2 ARG B 74 GLY B 75 -1 O GLY B 75 N GLN A 356 SHEET 1 AA3 4 CYS A 431 PHE A 438 0 SHEET 2 AA3 4 GLY A 417 CYS A 425 -1 N LEU A 419 O ASP A 436 SHEET 3 AA3 4 CYS A 485 ARG A 493 -1 O SER A 490 N LYS A 420 SHEET 4 AA3 4 ASP A 466 LEU A 468 -1 N ASP A 466 O LYS A 487 SHEET 1 AA4 5 LEU A 441 LEU A 443 0 SHEET 2 AA4 5 ILE A 497 LEU A 502 1 O HIS A 501 N LEU A 441 SHEET 3 AA4 5 ALA A 591 LEU A 598 -1 O LEU A 594 N LEU A 500 SHEET 4 AA4 5 VAL A 540 GLY A 551 -1 N ALA A 545 O PHE A 595 SHEET 5 AA4 5 LEU A 526 ASP A 527 -1 N LEU A 526 O TYR A 541 SHEET 1 AA5 7 LEU A 441 LEU A 443 0 SHEET 2 AA5 7 ILE A 497 LEU A 502 1 O HIS A 501 N LEU A 441 SHEET 3 AA5 7 ALA A 591 LEU A 598 -1 O LEU A 594 N LEU A 500 SHEET 4 AA5 7 VAL A 540 GLY A 551 -1 N ALA A 545 O PHE A 595 SHEET 5 AA5 7 GLY A 556 ARG A 563 -1 O ARG A 563 N TYR A 544 SHEET 6 AA5 7 TRP A 570 ASN A 574 -1 O PHE A 573 N ALA A 560 SHEET 7 AA5 7 SER A 577 MET A 581 -1 O SER A 577 N ASN A 574 SHEET 1 AA6 2 VAL A 453 THR A 454 0 SHEET 2 AA6 2 VAL A 519 ASN A 520 1 O ASN A 520 N VAL A 453 SHEET 1 AA7 2 THR A 475 CYS A 476 0 SHEET 2 AA7 2 GLY A 481 ARG A 482 -1 O GLY A 481 N CYS A 476 SHEET 1 AA8 5 THR B 12 GLU B 16 0 SHEET 2 AA8 5 GLN B 2 LYS B 6 -1 N ILE B 3 O LEU B 15 SHEET 3 AA8 5 THR B 66 VAL B 70 1 O LEU B 67 N PHE B 4 SHEET 4 AA8 5 ARG B 42 PHE B 45 -1 N ILE B 44 O HIS B 68 SHEET 5 AA8 5 LYS B 48 GLN B 49 -1 O LYS B 48 N PHE B 45 LINK SG CYS A 425 ZN ZN A 701 1555 1555 2.34 LINK SG CYS A 428 ZN ZN A 701 1555 1555 2.33 LINK SG CYS A 476 ZN ZN A 701 1555 1555 2.29 LINK SG CYS A 479 ZN ZN A 701 1555 1555 2.34 CISPEP 1 TYR A 450 PRO A 451 0 4.50 SITE 1 AC1 4 CYS A 425 CYS A 428 CYS A 476 CYS A 479 CRYST1 102.473 54.011 74.753 90.00 107.79 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009759 0.000000 0.003132 0.00000 SCALE2 0.000000 0.018515 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014049 0.00000