HEADER TRANSFERASE 28-JUN-17 5XVM TITLE STEROL 3-BETA-GLUCOSYLTRANSFERASE (UGT51) FROM SACCHAROMYCES TITLE 2 CEREVISIAE (STRAIN ATCC 204508 / S288C) COMPND MOL_ID: 1; COMPND 2 MOLECULE: STEROL 3-BETA-GLUCOSYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 722-1198; COMPND 5 SYNONYM: AUTOPHAGY-RELATED PROTEIN 26,UDP-GLYCOSYLTRANSFERASE 51; COMPND 6 EC: 2.4.1.173; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: ATG26, UGT51, YLR189C; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS GLYCOTRANSFERASE, COMPLEX, NATIVE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.FENG,L.-Q.CHEN REVDAT 4 22-NOV-23 5XVM 1 REMARK REVDAT 3 02-JAN-19 5XVM 1 JRNL REVDAT 2 14-NOV-18 5XVM 1 JRNL REVDAT 1 06-SEP-17 5XVM 0 JRNL AUTH L.-Q.CHEN,Y.ZHANG,Y.FENG JRNL TITL STRUCTURAL DISSECTION OF STEROL GLYCOSYLTRANSFERASE UGT51 JRNL TITL 2 FROM SACCHAROMYCES CEREVISIAE FOR SUBSTRATE SPECIFICITY. JRNL REF J. STRUCT. BIOL. V. 204 371 2018 JRNL REFN ESSN 1095-8657 JRNL PMID 30395931 JRNL DOI 10.1016/J.JSB.2018.11.001 REMARK 2 REMARK 2 RESOLUTION. 2.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0151 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 86.6 REMARK 3 NUMBER OF REFLECTIONS : 17894 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.272 REMARK 3 R VALUE (WORKING SET) : 0.270 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1989 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.77 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.84 REMARK 3 REFLECTION IN BIN (WORKING SET) : 535 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 36.02 REMARK 3 BIN R VALUE (WORKING SET) : 0.4060 REMARK 3 BIN FREE R VALUE SET COUNT : 60 REMARK 3 BIN FREE R VALUE : 0.4640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6416 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 25 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.06000 REMARK 3 B22 (A**2) : 0.29000 REMARK 3 B33 (A**2) : -0.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.524 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.413 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 22.583 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.859 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.844 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6569 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6348 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8888 ; 1.494 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14571 ; 2.015 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 798 ; 7.015 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 291 ;37.709 ;23.608 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1122 ;17.328 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;17.727 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 980 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7339 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1563 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3222 ; 1.513 ; 2.961 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3221 ; 1.513 ; 2.961 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4010 ; 2.544 ; 4.435 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4011 ; 2.544 ; 4.435 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3347 ; 1.454 ; 3.079 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3348 ; 1.453 ; 3.080 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4879 ; 2.469 ; 4.561 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7698 ; 4.748 ;35.151 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7617 ; 4.755 ;34.942 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5XVM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1300004255. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22991 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.770 REMARK 200 RESOLUTION RANGE LOW (A) : 53.150 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.82 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5GL5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, MAGNESIUM CHLORIDE, TRIS REMARK 280 PH8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 287.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.42950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.94500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.78550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.94500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.42950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.78550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 721 REMARK 465 LEU A 722 REMARK 465 MET A 723 REMARK 465 ILE A 724 REMARK 465 ASP A 725 REMARK 465 GLU A 726 REMARK 465 ASN A 727 REMARK 465 PRO A 728 REMARK 465 HIS A 729 REMARK 465 TYR A 730 REMARK 465 LYS A 731 REMARK 465 THR A 732 REMARK 465 SER A 733 REMARK 465 ILE A 734 REMARK 465 LYS A 735 REMARK 465 PRO A 736 REMARK 465 ASN A 737 REMARK 465 LYS A 738 REMARK 465 LEU A 802 REMARK 465 MET A 803 REMARK 465 VAL A 804 REMARK 465 GLU A 805 REMARK 465 ASN A 806 REMARK 465 GLU A 807 REMARK 465 SER A 808 REMARK 465 MET A 809 REMARK 465 ASN A 810 REMARK 465 VAL A 811 REMARK 465 LYS A 812 REMARK 465 MET A 813 REMARK 465 LEU A 814 REMARK 465 ARG A 815 REMARK 465 GLU A 816 REMARK 465 ALA A 817 REMARK 465 ASP A 967 REMARK 465 LYS A 968 REMARK 465 SER A 969 REMARK 465 ASP A 1034 REMARK 465 LYS A 1035 REMARK 465 ALA A 1036 REMARK 465 ALA A 1037 REMARK 465 THR A 1172 REMARK 465 PRO A 1173 REMARK 465 ARG A 1174 REMARK 465 LYS A 1175 REMARK 465 LYS A 1176 REMARK 465 GLU A 1177 REMARK 465 GLU A 1178 REMARK 465 ASN A 1179 REMARK 465 VAL A 1180 REMARK 465 ASP A 1181 REMARK 465 ALA A 1182 REMARK 465 THR A 1183 REMARK 465 LYS A 1184 REMARK 465 LEU A 1185 REMARK 465 THR A 1186 REMARK 465 PRO A 1187 REMARK 465 ALA A 1188 REMARK 465 GLU A 1189 REMARK 465 THR A 1190 REMARK 465 THR A 1191 REMARK 465 ASP A 1192 REMARK 465 GLU A 1193 REMARK 465 GLY A 1194 REMARK 465 TRP A 1195 REMARK 465 THR A 1196 REMARK 465 MET A 1197 REMARK 465 ILE A 1198 REMARK 465 MET B 721 REMARK 465 LEU B 722 REMARK 465 MET B 723 REMARK 465 ILE B 724 REMARK 465 ASP B 725 REMARK 465 GLU B 726 REMARK 465 ASN B 727 REMARK 465 PRO B 728 REMARK 465 HIS B 729 REMARK 465 TYR B 730 REMARK 465 LYS B 731 REMARK 465 THR B 732 REMARK 465 SER B 733 REMARK 465 ILE B 734 REMARK 465 LYS B 735 REMARK 465 PRO B 736 REMARK 465 VAL B 804 REMARK 465 GLU B 805 REMARK 465 ASN B 806 REMARK 465 GLU B 807 REMARK 465 SER B 808 REMARK 465 MET B 809 REMARK 465 ASN B 810 REMARK 465 VAL B 811 REMARK 465 LYS B 812 REMARK 465 ASP B 967 REMARK 465 LYS B 968 REMARK 465 SER B 969 REMARK 465 THR B 970 REMARK 465 LYS B 989 REMARK 465 LYS B 990 REMARK 465 LEU B 991 REMARK 465 VAL B 1001 REMARK 465 SER B 1002 REMARK 465 ASN B 1003 REMARK 465 ALA B 1004 REMARK 465 LYS B 1005 REMARK 465 LEU B 1032 REMARK 465 GLY B 1033 REMARK 465 ASP B 1034 REMARK 465 LYS B 1035 REMARK 465 ALA B 1036 REMARK 465 ALA B 1037 REMARK 465 LYS B 1038 REMARK 465 LYS B 1039 REMARK 465 THR B 1040 REMARK 465 GLU B 1041 REMARK 465 VAL B 1042 REMARK 465 ASP B 1043 REMARK 465 LEU B 1044 REMARK 465 PRO B 1045 REMARK 465 ARG B 1046 REMARK 465 LYS B 1171 REMARK 465 THR B 1172 REMARK 465 PRO B 1173 REMARK 465 ARG B 1174 REMARK 465 LYS B 1175 REMARK 465 LYS B 1176 REMARK 465 GLU B 1177 REMARK 465 GLU B 1178 REMARK 465 ASN B 1179 REMARK 465 VAL B 1180 REMARK 465 ASP B 1181 REMARK 465 ALA B 1182 REMARK 465 THR B 1183 REMARK 465 LYS B 1184 REMARK 465 LEU B 1185 REMARK 465 THR B 1186 REMARK 465 PRO B 1187 REMARK 465 ALA B 1188 REMARK 465 GLU B 1189 REMARK 465 THR B 1190 REMARK 465 THR B 1191 REMARK 465 ASP B 1192 REMARK 465 GLU B 1193 REMARK 465 GLY B 1194 REMARK 465 TRP B 1195 REMARK 465 THR B 1196 REMARK 465 MET B 1197 REMARK 465 ILE B 1198 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE LYS A 1111 CE LYS B 1111 1.16 REMARK 500 SD MET A 851 CD1 ILE A 909 1.92 REMARK 500 CA TYR A 893 CE MET B 803 1.98 REMARK 500 OE2 GLU A 983 OH TYR A 1021 2.10 REMARK 500 N TYR A 893 CE MET B 803 2.17 REMARK 500 OE2 GLU A 846 O ALA A 850 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A1040 N - CA - C ANGL. DEV. = 16.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 774 -166.66 -160.06 REMARK 500 ALA A 793 -156.05 -88.09 REMARK 500 TRP A 872 18.19 -152.38 REMARK 500 GLU A 955 -39.65 -36.97 REMARK 500 ASN A1003 68.41 -151.65 REMARK 500 ASN A1025 73.99 -101.12 REMARK 500 GLU A1041 -118.44 53.85 REMARK 500 PHE A1090 -58.58 -122.77 REMARK 500 LYS A1111 -64.99 -107.95 REMARK 500 THR B 774 -167.55 -161.95 REMARK 500 TRP B 872 16.46 -150.23 REMARK 500 LYS B 888 109.89 -58.91 REMARK 500 ASP B1019 51.75 28.12 REMARK 500 ASN B1025 73.38 -101.99 REMARK 500 PHE B1090 -57.25 -123.54 REMARK 500 LYS B1111 -61.11 -101.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1211 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH B1211 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH B1212 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH B1213 DISTANCE = 6.48 ANGSTROMS REMARK 525 HOH B1214 DISTANCE = 7.07 ANGSTROMS DBREF 5XVM A 722 1198 UNP Q06321 ATG26_YEAST 722 1198 DBREF 5XVM B 722 1198 UNP Q06321 ATG26_YEAST 722 1198 SEQADV 5XVM MET A 721 UNP Q06321 EXPRESSION TAG SEQADV 5XVM MET B 721 UNP Q06321 EXPRESSION TAG SEQRES 1 A 478 MET LEU MET ILE ASP GLU ASN PRO HIS TYR LYS THR SER SEQRES 2 A 478 ILE LYS PRO ASN LYS SER TYR LYS PHE GLY LEU LEU THR SEQRES 3 A 478 ILE GLY SER ARG GLY ASP VAL GLN PRO TYR ILE ALA LEU SEQRES 4 A 478 GLY LYS GLY LEU ILE LYS GLU GLY HIS GLN VAL VAL ILE SEQRES 5 A 478 ILE THR HIS SER GLU PHE ARG ASP PHE VAL GLU SER HIS SEQRES 6 A 478 GLY ILE GLN PHE GLU GLU ILE ALA GLY ASN PRO VAL GLU SEQRES 7 A 478 LEU MET SER LEU MET VAL GLU ASN GLU SER MET ASN VAL SEQRES 8 A 478 LYS MET LEU ARG GLU ALA SER SER LYS PHE ARG GLY TRP SEQRES 9 A 478 ILE ASP ALA LEU LEU GLN THR SER TRP GLU VAL CYS ASN SEQRES 10 A 478 ARG ARG LYS PHE ASP ILE LEU ILE GLU SER PRO SER ALA SEQRES 11 A 478 MET VAL GLY ILE HIS ILE THR GLU ALA LEU GLN ILE PRO SEQRES 12 A 478 TYR PHE ARG ALA PHE THR MET PRO TRP THR ARG THR ARG SEQRES 13 A 478 ALA TYR PRO HIS ALA PHE ILE VAL PRO ASP GLN LYS ARG SEQRES 14 A 478 GLY GLY ASN TYR ASN TYR LEU THR HIS VAL LEU PHE GLU SEQRES 15 A 478 ASN VAL PHE TRP LYS GLY ILE SER GLY GLN VAL ASN LYS SEQRES 16 A 478 TRP ARG VAL GLU THR LEU GLY LEU GLY LYS THR ASN LEU SEQRES 17 A 478 PHE LEU LEU GLN GLN ASN ASN VAL PRO PHE LEU TYR ASN SEQRES 18 A 478 VAL SER PRO THR ILE PHE PRO PRO SER ILE ASP PHE SER SEQRES 19 A 478 GLU TRP VAL ARG VAL THR GLY TYR TRP PHE LEU ASP ASP SEQRES 20 A 478 LYS SER THR PHE LYS PRO PRO ALA GLU LEU GLN GLU PHE SEQRES 21 A 478 ILE SER GLU ALA ARG SER LYS GLY LYS LYS LEU VAL TYR SEQRES 22 A 478 ILE GLY PHE GLY SER ILE VAL VAL SER ASN ALA LYS GLU SEQRES 23 A 478 MET THR GLU ALA LEU VAL GLU ALA VAL MET GLU ALA ASP SEQRES 24 A 478 VAL TYR CYS ILE LEU ASN LYS GLY TRP SER GLU ARG LEU SEQRES 25 A 478 GLY ASP LYS ALA ALA LYS LYS THR GLU VAL ASP LEU PRO SEQRES 26 A 478 ARG ASN ILE LEU ASN ILE GLY ASN VAL PRO HIS ASP TRP SEQRES 27 A 478 LEU PHE PRO GLN VAL ASP ALA ALA VAL HIS HIS GLY GLY SEQRES 28 A 478 SER GLY THR THR GLY ALA SER LEU ARG ALA GLY LEU PRO SEQRES 29 A 478 THR VAL ILE LYS PRO PHE PHE GLY ASP GLN PHE PHE TYR SEQRES 30 A 478 ALA GLY ARG VAL GLU ASP ILE GLY VAL GLY ILE ALA LEU SEQRES 31 A 478 LYS LYS LEU ASN ALA GLN THR LEU ALA ASP ALA LEU LYS SEQRES 32 A 478 VAL ALA THR THR ASN LYS ILE MET LYS ASP ARG ALA GLY SEQRES 33 A 478 LEU ILE LYS LYS LYS ILE SER LYS GLU ASP GLY ILE LYS SEQRES 34 A 478 THR ALA ILE SER ALA ILE TYR ASN GLU LEU GLU TYR ALA SEQRES 35 A 478 ARG SER VAL THR LEU SER ARG VAL LYS THR PRO ARG LYS SEQRES 36 A 478 LYS GLU GLU ASN VAL ASP ALA THR LYS LEU THR PRO ALA SEQRES 37 A 478 GLU THR THR ASP GLU GLY TRP THR MET ILE SEQRES 1 B 478 MET LEU MET ILE ASP GLU ASN PRO HIS TYR LYS THR SER SEQRES 2 B 478 ILE LYS PRO ASN LYS SER TYR LYS PHE GLY LEU LEU THR SEQRES 3 B 478 ILE GLY SER ARG GLY ASP VAL GLN PRO TYR ILE ALA LEU SEQRES 4 B 478 GLY LYS GLY LEU ILE LYS GLU GLY HIS GLN VAL VAL ILE SEQRES 5 B 478 ILE THR HIS SER GLU PHE ARG ASP PHE VAL GLU SER HIS SEQRES 6 B 478 GLY ILE GLN PHE GLU GLU ILE ALA GLY ASN PRO VAL GLU SEQRES 7 B 478 LEU MET SER LEU MET VAL GLU ASN GLU SER MET ASN VAL SEQRES 8 B 478 LYS MET LEU ARG GLU ALA SER SER LYS PHE ARG GLY TRP SEQRES 9 B 478 ILE ASP ALA LEU LEU GLN THR SER TRP GLU VAL CYS ASN SEQRES 10 B 478 ARG ARG LYS PHE ASP ILE LEU ILE GLU SER PRO SER ALA SEQRES 11 B 478 MET VAL GLY ILE HIS ILE THR GLU ALA LEU GLN ILE PRO SEQRES 12 B 478 TYR PHE ARG ALA PHE THR MET PRO TRP THR ARG THR ARG SEQRES 13 B 478 ALA TYR PRO HIS ALA PHE ILE VAL PRO ASP GLN LYS ARG SEQRES 14 B 478 GLY GLY ASN TYR ASN TYR LEU THR HIS VAL LEU PHE GLU SEQRES 15 B 478 ASN VAL PHE TRP LYS GLY ILE SER GLY GLN VAL ASN LYS SEQRES 16 B 478 TRP ARG VAL GLU THR LEU GLY LEU GLY LYS THR ASN LEU SEQRES 17 B 478 PHE LEU LEU GLN GLN ASN ASN VAL PRO PHE LEU TYR ASN SEQRES 18 B 478 VAL SER PRO THR ILE PHE PRO PRO SER ILE ASP PHE SER SEQRES 19 B 478 GLU TRP VAL ARG VAL THR GLY TYR TRP PHE LEU ASP ASP SEQRES 20 B 478 LYS SER THR PHE LYS PRO PRO ALA GLU LEU GLN GLU PHE SEQRES 21 B 478 ILE SER GLU ALA ARG SER LYS GLY LYS LYS LEU VAL TYR SEQRES 22 B 478 ILE GLY PHE GLY SER ILE VAL VAL SER ASN ALA LYS GLU SEQRES 23 B 478 MET THR GLU ALA LEU VAL GLU ALA VAL MET GLU ALA ASP SEQRES 24 B 478 VAL TYR CYS ILE LEU ASN LYS GLY TRP SER GLU ARG LEU SEQRES 25 B 478 GLY ASP LYS ALA ALA LYS LYS THR GLU VAL ASP LEU PRO SEQRES 26 B 478 ARG ASN ILE LEU ASN ILE GLY ASN VAL PRO HIS ASP TRP SEQRES 27 B 478 LEU PHE PRO GLN VAL ASP ALA ALA VAL HIS HIS GLY GLY SEQRES 28 B 478 SER GLY THR THR GLY ALA SER LEU ARG ALA GLY LEU PRO SEQRES 29 B 478 THR VAL ILE LYS PRO PHE PHE GLY ASP GLN PHE PHE TYR SEQRES 30 B 478 ALA GLY ARG VAL GLU ASP ILE GLY VAL GLY ILE ALA LEU SEQRES 31 B 478 LYS LYS LEU ASN ALA GLN THR LEU ALA ASP ALA LEU LYS SEQRES 32 B 478 VAL ALA THR THR ASN LYS ILE MET LYS ASP ARG ALA GLY SEQRES 33 B 478 LEU ILE LYS LYS LYS ILE SER LYS GLU ASP GLY ILE LYS SEQRES 34 B 478 THR ALA ILE SER ALA ILE TYR ASN GLU LEU GLU TYR ALA SEQRES 35 B 478 ARG SER VAL THR LEU SER ARG VAL LYS THR PRO ARG LYS SEQRES 36 B 478 LYS GLU GLU ASN VAL ASP ALA THR LYS LEU THR PRO ALA SEQRES 37 B 478 GLU THR THR ASP GLU GLY TRP THR MET ILE FORMUL 3 HOH *25(H2 O) HELIX 1 AA1 SER A 749 GLU A 766 1 18 HELIX 2 AA2 HIS A 775 GLU A 777 5 3 HELIX 3 AA3 PHE A 778 SER A 784 1 7 HELIX 4 AA4 PRO A 796 SER A 801 1 6 HELIX 5 AA5 SER A 819 LYS A 840 1 22 HELIX 6 AA6 VAL A 852 GLN A 861 1 10 HELIX 7 AA7 HIS A 880 VAL A 884 5 5 HELIX 8 AA8 GLY A 890 THR A 920 1 31 HELIX 9 AA9 ASN A 927 GLN A 932 1 6 HELIX 10 AB1 GLN A 933 VAL A 936 5 4 HELIX 11 AB2 PRO A 974 GLY A 988 1 15 HELIX 12 AB3 ASN A 1003 ALA A 1018 1 16 HELIX 13 AB4 PRO A 1055 PHE A 1060 1 6 HELIX 14 AB5 PRO A 1061 VAL A 1063 5 3 HELIX 15 AB6 GLY A 1071 ALA A 1081 1 11 HELIX 16 AB7 GLY A 1092 GLY A 1105 1 14 HELIX 17 AB8 ASN A 1114 ASN A 1128 1 15 HELIX 18 AB9 ASN A 1128 LYS A 1144 1 17 HELIX 19 AC1 ASP A 1146 GLU A 1158 1 13 HELIX 20 AC2 GLU A 1158 VAL A 1170 1 13 HELIX 21 AC3 SER B 749 GLU B 766 1 18 HELIX 22 AC4 HIS B 775 GLU B 777 5 3 HELIX 23 AC5 PHE B 778 SER B 784 1 7 HELIX 24 AC6 PRO B 796 SER B 801 1 6 HELIX 25 AC7 LEU B 814 LYS B 840 1 27 HELIX 26 AC8 VAL B 852 GLN B 861 1 10 HELIX 27 AC9 HIS B 880 VAL B 884 5 5 HELIX 28 AD1 GLY B 890 THR B 920 1 31 HELIX 29 AD2 ASN B 927 GLN B 932 1 6 HELIX 30 AD3 GLN B 933 VAL B 936 5 4 HELIX 31 AD4 PRO B 974 LYS B 987 1 14 HELIX 32 AD5 MET B 1007 ALA B 1018 1 12 HELIX 33 AD6 PRO B 1055 PHE B 1060 1 6 HELIX 34 AD7 PRO B 1061 VAL B 1063 5 3 HELIX 35 AD8 GLY B 1071 ALA B 1081 1 11 HELIX 36 AD9 GLY B 1092 GLY B 1105 1 14 HELIX 37 AE1 ASN B 1114 ASN B 1128 1 15 HELIX 38 AE2 ASN B 1128 LYS B 1144 1 17 HELIX 39 AE3 ASP B 1146 GLU B 1158 1 13 HELIX 40 AE4 GLU B 1158 VAL B 1170 1 13 SHEET 1 AA1 7 GLN A 788 GLU A 791 0 SHEET 2 AA1 7 GLN A 769 THR A 774 1 N ILE A 772 O GLN A 788 SHEET 3 AA1 7 LYS A 741 LEU A 745 1 N LEU A 744 O ILE A 773 SHEET 4 AA1 7 ILE A 843 GLU A 846 1 O ILE A 845 N GLY A 743 SHEET 5 AA1 7 TYR A 864 PHE A 868 1 O PHE A 865 N LEU A 844 SHEET 6 AA1 7 PHE A 938 TYR A 940 1 O LEU A 939 N ARG A 866 SHEET 7 AA1 7 VAL A 957 VAL A 959 1 O ARG A 958 N TYR A 940 SHEET 1 AA2 6 ILE A1048 ASN A1050 0 SHEET 2 AA2 6 VAL A1020 LEU A1024 1 N LEU A1024 O LEU A1049 SHEET 3 AA2 6 LYS A 990 GLY A 995 1 N VAL A 992 O ILE A1023 SHEET 4 AA2 6 ALA A1065 HIS A1068 1 O VAL A1067 N TYR A 993 SHEET 5 AA2 6 THR A1085 ILE A1087 1 O VAL A1086 N ALA A1066 SHEET 6 AA2 6 GLY A1107 ALA A1109 1 O ILE A1108 N ILE A1087 SHEET 1 AA3 2 ILE A 999 VAL A1000 0 SHEET 2 AA3 2 TRP A1028 SER A1029 1 O SER A1029 N ILE A 999 SHEET 1 AA4 7 GLN B 788 GLU B 791 0 SHEET 2 AA4 7 GLN B 769 THR B 774 1 N ILE B 772 O GLN B 788 SHEET 3 AA4 7 LYS B 741 LEU B 745 1 N LEU B 744 O VAL B 771 SHEET 4 AA4 7 ILE B 843 GLU B 846 1 O ILE B 845 N GLY B 743 SHEET 5 AA4 7 TYR B 864 PHE B 868 1 O PHE B 865 N LEU B 844 SHEET 6 AA4 7 PHE B 938 TYR B 940 1 O LEU B 939 N ARG B 866 SHEET 7 AA4 7 VAL B 957 VAL B 959 1 O ARG B 958 N TYR B 940 SHEET 1 AA5 6 ILE B1048 ASN B1050 0 SHEET 2 AA5 6 CYS B1022 LEU B1024 1 N LEU B1024 O LEU B1049 SHEET 3 AA5 6 TYR B 993 GLY B 995 1 N ILE B 994 O ILE B1023 SHEET 4 AA5 6 ALA B1066 HIS B1068 1 O VAL B1067 N TYR B 993 SHEET 5 AA5 6 THR B1085 ILE B1087 1 O VAL B1086 N ALA B1066 SHEET 6 AA5 6 GLY B1107 ALA B1109 1 O ILE B1108 N ILE B1087 CRYST1 68.859 83.571 151.890 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014522 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011966 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006584 0.00000