HEADER BIOSYNTHETIC PROTEIN 29-JUN-17 5XW2 TITLE CRYSTAL STRUCTURE OF THE HYDROXYLASE HMTN IN C 1 2 1 CRYSTAL FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME P450 107B1 (P450CVIIB1); COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HMTN,P450-LIKE ENZYME; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES HIMASTATINICUS ATCC 53653; SOURCE 3 ORGANISM_TAXID: 457427; SOURCE 4 STRAIN: ATCC 53653; SOURCE 5 GENE: HMTN, SSOG_07636; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HIMASTATIN, HYDROXYLASE, CYTOCHROME P450, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.D.ZHANG,H.J.ZHANG REVDAT 2 22-NOV-23 5XW2 1 REMARK REVDAT 1 25-APR-18 5XW2 0 JRNL AUTH H.ZHANG,J.CHEN,H.ZHANG JRNL TITL MOLECULAR CHARACTERIZATION OF THE HYDROXYLASE HMTN AT 1.3 JRNL TITL 2 ANGSTROM RESOLUTION. JRNL REF BIOCHEM. BIOPHYS. RES. 2017 JRNL REF 2 COMMUN. JRNL REFN ESSN 1090-2104 JRNL PMID 28687492 JRNL DOI 10.1016/J.BBRC.2017.07.010 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.51 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.680 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 111281 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5569 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.5383 - 4.0331 0.84 3123 183 0.1917 0.2325 REMARK 3 2 4.0331 - 3.2014 0.97 3559 180 0.1526 0.1653 REMARK 3 3 3.2014 - 2.7968 1.00 3598 204 0.1607 0.1733 REMARK 3 4 2.7968 - 2.5411 0.99 3621 180 0.1564 0.1670 REMARK 3 5 2.5411 - 2.3590 1.00 3620 187 0.1555 0.1509 REMARK 3 6 2.3590 - 2.2199 0.98 3569 176 0.1535 0.1617 REMARK 3 7 2.2199 - 2.1087 1.00 3608 208 0.1497 0.1774 REMARK 3 8 2.1087 - 2.0169 0.98 3498 199 0.1605 0.1683 REMARK 3 9 2.0169 - 1.9393 0.99 3627 173 0.1611 0.1710 REMARK 3 10 1.9393 - 1.8724 0.97 3489 180 0.1648 0.1848 REMARK 3 11 1.8724 - 1.8138 1.00 3600 215 0.1619 0.1858 REMARK 3 12 1.8138 - 1.7620 1.00 3578 218 0.1668 0.1843 REMARK 3 13 1.7620 - 1.7156 0.99 3624 174 0.1661 0.1838 REMARK 3 14 1.7156 - 1.6737 1.00 3581 186 0.1621 0.1839 REMARK 3 15 1.6737 - 1.6357 1.00 3577 203 0.1602 0.1816 REMARK 3 16 1.6357 - 1.6009 1.00 3593 194 0.1701 0.1951 REMARK 3 17 1.6009 - 1.5688 1.00 3600 205 0.1654 0.1656 REMARK 3 18 1.5688 - 1.5392 1.00 3594 169 0.1670 0.2013 REMARK 3 19 1.5392 - 1.5117 0.97 3499 185 0.1791 0.2056 REMARK 3 20 1.5117 - 1.4861 1.00 3570 174 0.1746 0.1850 REMARK 3 21 1.4861 - 1.4621 0.99 3619 179 0.1843 0.2067 REMARK 3 22 1.4621 - 1.4396 0.99 3588 191 0.1873 0.1917 REMARK 3 23 1.4396 - 1.4185 1.00 3562 184 0.1885 0.2298 REMARK 3 24 1.4185 - 1.3985 1.00 3594 186 0.1936 0.1922 REMARK 3 25 1.3985 - 1.3796 1.00 3586 176 0.1981 0.2202 REMARK 3 26 1.3796 - 1.3617 0.97 3510 193 0.2227 0.2734 REMARK 3 27 1.3617 - 1.3447 1.00 3593 177 0.2051 0.2330 REMARK 3 28 1.3447 - 1.3284 0.97 3480 175 0.2045 0.2187 REMARK 3 29 1.3284 - 1.3130 0.92 3284 176 0.2091 0.2235 REMARK 3 30 1.3130 - 1.2982 0.76 2768 139 0.2322 0.2067 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.72 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 3101 REMARK 3 ANGLE : 1.282 4215 REMARK 3 CHIRALITY : 0.091 453 REMARK 3 PLANARITY : 0.010 545 REMARK 3 DIHEDRAL : 11.696 1151 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5XW2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1300004268. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979228 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 111281 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.298 REMARK 200 RESOLUTION RANGE LOW (A) : 60.171 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.7900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 94.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.28600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.880 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4GGV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% (W/V) PEG 8000, 0.2M MAGNESIUM REMARK 280 CHLORIDE, 0.1M TRIS, PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 63.06500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.42000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 63.06500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.42000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 ASP A 66 REMARK 465 GLU A 67 REMARK 465 ASP A 164 REMARK 465 VAL A 165 REMARK 465 SER A 166 REMARK 465 MET A 167 REMARK 465 GLU A 168 REMARK 465 ASP A 169 REMARK 465 ALA A 170 REMARK 465 PRO A 171 REMARK 465 GLU A 172 REMARK 465 ASP A 173 REMARK 465 GLN A 174 REMARK 465 GLU A 175 REMARK 465 ARG A 176 REMARK 465 ILE A 177 REMARK 465 PHE A 178 REMARK 465 GLU A 179 REMARK 465 ALA A 180 REMARK 465 GLY A 181 REMARK 465 MET A 182 REMARK 465 VAL A 216 REMARK 465 ASP A 217 REMARK 465 GLY A 218 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 617 O HOH A 895 1.60 REMARK 500 O HOH A 758 O HOH A 781 1.85 REMARK 500 O HOH A 693 O HOH A 846 1.85 REMARK 500 O HOH A 742 O HOH A 918 1.90 REMARK 500 O HOH A 980 O HOH A 998 1.91 REMARK 500 O HOH A 899 O HOH A 938 1.93 REMARK 500 O HOH A 708 O HOH A 886 1.94 REMARK 500 O HOH A 557 O HOH A 772 1.96 REMARK 500 O HOH A 520 O HOH A 901 1.96 REMARK 500 O HOH A 520 O HOH A 932 1.98 REMARK 500 O HOH A 514 O HOH A 526 1.99 REMARK 500 O HOH A 504 O HOH A 887 1.99 REMARK 500 O HOH A 742 O HOH A 810 1.99 REMARK 500 O HOH A 805 O HOH A 905 1.99 REMARK 500 O HOH A 538 O HOH A 672 2.00 REMARK 500 O ASP A 147 O HOH A 501 2.01 REMARK 500 O HOH A 876 O HOH A 998 2.01 REMARK 500 N MET A 32 O HOH A 502 2.01 REMARK 500 NE ARG A 23 O HOH A 503 2.04 REMARK 500 O HOH A 654 O HOH A 836 2.05 REMARK 500 O HOH A 690 O HOH A 786 2.05 REMARK 500 O PRO A 62 O HOH A 504 2.05 REMARK 500 O HOH A 549 O HOH A 783 2.06 REMARK 500 O HOH A 885 O HOH A 910 2.06 REMARK 500 N GLY A 64 O HOH A 505 2.06 REMARK 500 O HOH A 591 O HOH A 874 2.06 REMARK 500 O HOH A 813 O HOH A 847 2.07 REMARK 500 O HOH A 681 O HOH A 931 2.08 REMARK 500 OE2 GLU A 27 O HOH A 506 2.08 REMARK 500 O HOH A 746 O HOH A 947 2.08 REMARK 500 O HOH A 790 O HOH A 899 2.09 REMARK 500 O HOH A 853 O HOH A 934 2.09 REMARK 500 OE2 GLU A 6 O HOH A 507 2.09 REMARK 500 SD MET A 155 O HOH A 933 2.10 REMARK 500 O HOH A 521 O HOH A 828 2.10 REMARK 500 O HOH A 784 O HOH A 950 2.10 REMARK 500 O HOH A 634 O HOH A 902 2.10 REMARK 500 O HOH A 765 O HOH A 994 2.11 REMARK 500 O HOH A 874 O HOH A 916 2.12 REMARK 500 O HOH A 898 O HOH A 940 2.12 REMARK 500 N LEU A 150 O HOH A 501 2.13 REMARK 500 O HOH A 903 O HOH A 975 2.14 REMARK 500 NE ARG A 7 O HOH A 508 2.14 REMARK 500 O HOH A 550 O HOH A 849 2.15 REMARK 500 O HOH A 565 O HOH A 915 2.16 REMARK 500 O HOH A 901 O HOH A 932 2.16 REMARK 500 O HOH A 695 O HOH A 896 2.17 REMARK 500 O HOH A 811 O HOH A 826 2.17 REMARK 500 O HOH A 889 O HOH A 983 2.17 REMARK 500 O HOH A 738 O HOH A 917 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 761 O HOH A 761 2556 1.39 REMARK 500 O HOH A 530 O HOH A 530 2556 1.53 REMARK 500 O HOH A 524 O HOH A 524 2556 1.64 REMARK 500 O HOH A 754 O HOH A 844 4446 1.79 REMARK 500 O HOH A 895 O HOH A 961 4446 1.96 REMARK 500 O HOH A 587 O HOH A 866 4455 2.06 REMARK 500 O HOH A 869 O HOH A 954 4445 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 114 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP A 293 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 11 54.91 32.39 REMARK 500 PRO A 12 -28.64 -36.69 REMARK 500 MET A 63 109.01 -42.29 REMARK 500 LEU A 128 -52.01 -140.10 REMARK 500 TYR A 238 -75.21 -93.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1005 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A1006 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH A1007 DISTANCE = 6.38 ANGSTROMS REMARK 525 HOH A1008 DISTANCE = 6.87 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 405 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 290 O REMARK 620 2 ASP A 304 OD1 94.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 346 SG REMARK 620 2 HEM A 401 NA 99.3 REMARK 620 3 HEM A 401 NB 82.3 87.3 REMARK 620 4 HEM A 401 NC 83.3 173.0 86.6 REMARK 620 5 HEM A 401 ND 98.6 93.2 178.9 92.9 REMARK 620 6 HOH A 557 O 169.3 86.7 89.2 89.8 89.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4E2P RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HMTN IN P 21 21 21 CRYSTAL FORM DBREF 5XW2 A 1 399 UNP D9WMQ6 D9WMQ6_9ACTN 1 399 SEQADV 5XW2 MET A -19 UNP D9WMQ6 EXPRESSION TAG SEQADV 5XW2 GLY A -18 UNP D9WMQ6 EXPRESSION TAG SEQADV 5XW2 SER A -17 UNP D9WMQ6 EXPRESSION TAG SEQADV 5XW2 SER A -16 UNP D9WMQ6 EXPRESSION TAG SEQADV 5XW2 HIS A -15 UNP D9WMQ6 EXPRESSION TAG SEQADV 5XW2 HIS A -14 UNP D9WMQ6 EXPRESSION TAG SEQADV 5XW2 HIS A -13 UNP D9WMQ6 EXPRESSION TAG SEQADV 5XW2 HIS A -12 UNP D9WMQ6 EXPRESSION TAG SEQADV 5XW2 HIS A -11 UNP D9WMQ6 EXPRESSION TAG SEQADV 5XW2 HIS A -10 UNP D9WMQ6 EXPRESSION TAG SEQADV 5XW2 SER A -9 UNP D9WMQ6 EXPRESSION TAG SEQADV 5XW2 SER A -8 UNP D9WMQ6 EXPRESSION TAG SEQADV 5XW2 GLY A -7 UNP D9WMQ6 EXPRESSION TAG SEQADV 5XW2 LEU A -6 UNP D9WMQ6 EXPRESSION TAG SEQADV 5XW2 VAL A -5 UNP D9WMQ6 EXPRESSION TAG SEQADV 5XW2 PRO A -4 UNP D9WMQ6 EXPRESSION TAG SEQADV 5XW2 ARG A -3 UNP D9WMQ6 EXPRESSION TAG SEQADV 5XW2 GLY A -2 UNP D9WMQ6 EXPRESSION TAG SEQADV 5XW2 SER A -1 UNP D9WMQ6 EXPRESSION TAG SEQADV 5XW2 HIS A 0 UNP D9WMQ6 EXPRESSION TAG SEQRES 1 A 419 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 419 LEU VAL PRO ARG GLY SER HIS MET THR THR PRO ALA GLU SEQRES 3 A 419 ARG TRP GLY ILE HIS PRO GLU HIS PHE TRP LEU TYR GLY SEQRES 4 A 419 ARG ARG PRO ARG GLN MET VAL GLU PHE ASP GLU LYS MET SEQRES 5 A 419 ASN ALA TRP ASN VAL TYR GLY TYR ALA GLU ALA ILE GLU SEQRES 6 A 419 VAL LEU GLY ASP PRO GLY THR PHE SER SER HIS MET SER SEQRES 7 A 419 ARG LEU LEU PRO MET GLY ALA ASP GLU ALA PHE THR GLU SEQRES 8 A 419 GLY ASP LEU LEU GLN THR ASP PRO PRO ASP HIS ARG GLU SEQRES 9 A 419 LEU ARG LYS LEU VAL SER HIS ALA PHE THR PRO LYS VAL SEQRES 10 A 419 VAL ALA GLU LEU GLU PRO ARG ILE THR ALA LEU THR GLN SEQRES 11 A 419 GLU LEU LEU ASP ALA VAL ALA ASP ARG ASP THR PHE ASP SEQRES 12 A 419 LEU MET THR ALA LEU ALA TYR PRO LEU PRO VAL THR VAL SEQRES 13 A 419 VAL ALA GLU LEU LEU SER ILE PRO SER ALA ASP ARG HIS SEQRES 14 A 419 LEU PHE GLU GLY TRP MET THR GLU ILE VAL HIS SER LEU SEQRES 15 A 419 GLY ASP VAL SER MET GLU ASP ALA PRO GLU ASP GLN GLU SEQRES 16 A 419 ARG ILE PHE GLU ALA GLY MET ALA PRO MET ARG LYS MET SEQRES 17 A 419 LEU GLU TYR LEU ARG GLU HIS ALA ALA GLU CYS ARG ARG SEQRES 18 A 419 ARG PRO ARG GLY ASP LEU MET GLY LYS LEU ILE GLU ALA SEQRES 19 A 419 GLU VAL ASP GLY ARG ARG LEU THR ASP ASN HIS ILE VAL SEQRES 20 A 419 ASN PHE ALA LYS MET LEU LEU ILE ALA GLY TYR LEU THR SEQRES 21 A 419 THR THR MET LEU ILE GLY ASN THR VAL LEU CYS LEU ASP SEQRES 22 A 419 SER TYR PRO GLU GLN ALA ALA ARG VAL ARG ALA ASP ARG SEQRES 23 A 419 SER LEU ILE PRO GLY LEU LEU GLU GLU SER MET ARG PHE SEQRES 24 A 419 LEU SER PRO VAL ALA ALA THR TYR ARG ALA THR THR ARG SEQRES 25 A 419 ASP VAL GLU VAL ALA GLY GLN ARG LEU SER ALA ASP GLN SEQRES 26 A 419 MET VAL MET VAL TRP PHE GLY ALA ALA ASN ARG ASP ALA SEQRES 27 A 419 ARG GLN PHE ALA GLU PRO GLU LEU PHE ASP MET THR ARG SEQRES 28 A 419 GLY PRO ASN PRO HIS LEU GLY PHE GLY ARG GLY ILE HIS SEQRES 29 A 419 PHE CYS LEU GLY GLY PRO LEU ALA ARG MET GLU GLY ARG SEQRES 30 A 419 VAL ALA LEU ASP HIS LEU LEU ASP ARG PHE PRO GLU LEU SEQRES 31 A 419 TYR THR ASP PRO GLU ARG PRO PRO THR PHE MET PRO GLY SEQRES 32 A 419 PHE ASP THR THR GLY VAL SER SER LEU PRO LEU ARG THR SEQRES 33 A 419 SER LEU GLY HET HEM A 401 43 HET GOL A 402 14 HET GOL A 403 14 HET GOL A 404 14 HET MG A 405 1 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETSYN HEM HEME HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 GOL 3(C3 H8 O3) FORMUL 6 MG MG 2+ FORMUL 7 HOH *508(H2 O) HELIX 1 AA1 THR A 3 GLY A 9 1 7 HELIX 2 AA2 HIS A 14 GLY A 19 5 6 HELIX 3 AA3 GLY A 39 GLY A 48 1 10 HELIX 4 AA4 HIS A 56 LEU A 61 5 6 HELIX 5 AA5 ASP A 73 THR A 77 5 5 HELIX 6 AA6 PRO A 80 SER A 90 1 11 HELIX 7 AA7 HIS A 91 PHE A 93 5 3 HELIX 8 AA8 THR A 94 ALA A 117 1 24 HELIX 9 AA9 LEU A 124 LEU A 128 1 5 HELIX 10 AB1 PRO A 133 LEU A 141 1 9 HELIX 11 AB2 PRO A 144 ALA A 146 5 3 HELIX 12 AB3 ASP A 147 LEU A 162 1 16 HELIX 13 AB4 PRO A 184 ARG A 200 1 17 HELIX 14 AB5 ASP A 206 ALA A 214 1 9 HELIX 15 AB6 THR A 222 TYR A 238 1 17 HELIX 16 AB7 TYR A 238 TYR A 255 1 18 HELIX 17 AB8 TYR A 255 ASP A 265 1 11 HELIX 18 AB9 LEU A 268 LEU A 280 1 13 HELIX 19 AC1 TRP A 310 ASN A 315 1 6 HELIX 20 AC2 GLY A 348 PHE A 367 1 20 SHEET 1 AA1 5 VAL A 26 ASP A 29 0 SHEET 2 AA1 5 ALA A 34 VAL A 37 -1 O ALA A 34 N ASP A 29 SHEET 3 AA1 5 MET A 306 VAL A 309 1 O MET A 308 N TRP A 35 SHEET 4 AA1 5 THR A 286 THR A 290 -1 N ARG A 288 O VAL A 307 SHEET 5 AA1 5 PHE A 53 SER A 54 -1 N SER A 54 O ALA A 289 SHEET 1 AA2 3 THR A 121 ASP A 123 0 SHEET 2 AA2 3 PRO A 393 ARG A 395 -1 O LEU A 394 N PHE A 122 SHEET 3 AA2 3 TYR A 371 THR A 372 -1 N TYR A 371 O ARG A 395 SHEET 1 AA3 2 VAL A 294 VAL A 296 0 SHEET 2 AA3 2 GLN A 299 LEU A 301 -1 O LEU A 301 N VAL A 294 SHEET 1 AA4 2 THR A 379 PHE A 380 0 SHEET 2 AA4 2 VAL A 389 SER A 391 -1 O SER A 390 N THR A 379 LINK O THR A 290 MG MG A 405 1555 1555 2.78 LINK OD1 ASP A 304 MG MG A 405 1555 1555 2.81 LINK SG CYS A 346 FE HEM A 401 1555 1555 2.53 LINK FE HEM A 401 O HOH A 557 1555 1555 1.89 CISPEP 1 PRO A 79 PRO A 80 0 5.75 CISPEP 2 GLY A 332 PRO A 333 0 -0.61 SITE 1 AC1 26 LEU A 74 LEU A 75 HIS A 82 ARG A 86 SITE 2 AC1 26 PHE A 93 MET A 232 ALA A 236 GLY A 237 SITE 3 AC1 26 THR A 240 LEU A 244 VAL A 283 THR A 286 SITE 4 AC1 26 ARG A 288 PHE A 311 GLY A 338 PHE A 339 SITE 5 AC1 26 GLY A 340 ILE A 343 HIS A 344 CYS A 346 SITE 6 AC1 26 GLY A 348 LEU A 351 HOH A 536 HOH A 557 SITE 7 AC1 26 HOH A 585 HOH A 772 SITE 1 AC2 10 GLU A 111 GLU A 274 ASN A 334 PRO A 335 SITE 2 AC2 10 HIS A 336 PHE A 339 ARG A 341 ARG A 353 SITE 3 AC2 10 HOH A 621 HOH A 721 SITE 1 AC3 3 HIS A 91 ASP A 206 LEU A 207 SITE 1 AC4 4 MET A 32 ASN A 33 HOH A 555 HOH A 620 SITE 1 AC5 3 ARG A 59 THR A 290 ASP A 304 CRYST1 126.130 72.840 53.750 90.00 107.43 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007928 0.000000 0.002489 0.00000 SCALE2 0.000000 0.013729 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019500 0.00000