HEADER CELL ADHESION 30-JUN-17 5XWX TITLE CRYSTAL STRUCTURE OF THE FOUR N-TERMINAL IMMUNOGLOGULIN DOMAINS OF TITLE 2 SIDEKICK-1 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN SIDEKICK-1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-458; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: SDK1; SOURCE 6 EXPRESSION_SYSTEM: INSECT CELL EXPRESSION VECTOR PTIE1; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 266783 KEYWDS CELL-CELL ADHESION, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR H.TANG,Y.DONG,Y.HE REVDAT 3 26-SEP-18 5XWX 1 JRNL REVDAT 2 19-SEP-18 5XWX 1 JRNL REVDAT 1 29-AUG-18 5XWX 0 JRNL AUTH H.TANG,H.CHANG,Y.DONG,L.GUO,X.SHI,Y.WU,Y.HUANG,Y.HE JRNL TITL ARCHITECTURE OF CELL-CELL ADHESION MEDIATED BY SIDEKICKS. JRNL REF PROC. NATL. ACAD. SCI. V. 115 9246 2018 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 30150416 JRNL DOI 10.1073/PNAS.1801810115 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1690 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.500 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 131094 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.520 REMARK 3 FREE R VALUE TEST SET COUNT : 1994 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.5208 - 3.7341 0.82 8127 120 0.2152 0.2360 REMARK 3 2 3.7341 - 2.9647 0.96 9268 146 0.2170 0.2527 REMARK 3 3 2.9647 - 2.5902 1.00 9516 149 0.2266 0.2490 REMARK 3 4 2.5902 - 2.3535 1.00 9471 144 0.2220 0.2491 REMARK 3 5 2.3535 - 2.1849 1.00 9461 151 0.2137 0.2472 REMARK 3 6 2.1849 - 2.0561 1.00 9437 141 0.2099 0.2448 REMARK 3 7 2.0561 - 1.9532 0.99 9374 153 0.2105 0.2324 REMARK 3 8 1.9532 - 1.8681 0.99 9376 139 0.2118 0.2298 REMARK 3 9 1.8681 - 1.7962 0.99 9376 141 0.2204 0.2370 REMARK 3 10 1.7962 - 1.7343 0.99 9255 150 0.2277 0.2638 REMARK 3 11 1.7343 - 1.6800 0.98 9278 138 0.2435 0.2643 REMARK 3 12 1.6800 - 1.6320 0.98 9186 140 0.2624 0.2858 REMARK 3 13 1.6320 - 1.5891 0.97 9147 143 0.2944 0.3420 REMARK 3 14 1.5891 - 1.5503 0.94 8828 139 0.3132 0.3535 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 6004 REMARK 3 ANGLE : 1.245 8166 REMARK 3 CHIRALITY : 0.043 924 REMARK 3 PLANARITY : 0.008 1060 REMARK 3 DIHEDRAL : 13.380 2224 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5XWX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1300004294. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 80.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 131095 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SHELXCD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS(PH 8.0), 30 % PEG 400, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.92550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.42100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 59.03100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.42100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.92550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 59.03100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -18 REMARK 465 ALA A -17 REMARK 465 ARG A -16 REMARK 465 ALA A -15 REMARK 465 ARG A -14 REMARK 465 PRO A -13 REMARK 465 SER A -12 REMARK 465 VAL A -11 REMARK 465 ALA A -10 REMARK 465 GLY A -9 REMARK 465 GLY A -8 REMARK 465 GLY A -7 REMARK 465 VAL A -6 REMARK 465 ALA A -5 REMARK 465 ALA A -4 REMARK 465 PRO A -3 REMARK 465 PRO A -2 REMARK 465 GLU A -1 REMARK 465 ARG A 0 REMARK 465 ALA A 1 REMARK 465 GLY A 2 REMARK 465 PRO A 3 REMARK 465 GLY A 4 REMARK 465 ARG A 5 REMARK 465 PRO A 6 REMARK 465 ARG A 7 REMARK 465 ARG A 8 REMARK 465 SER A 9 REMARK 465 ARG A 10 REMARK 465 THR A 11 REMARK 465 GLY A 12 REMARK 465 HIS A 13 REMARK 465 HIS A 14 REMARK 465 CYS A 15 REMARK 465 ASP A 16 REMARK 465 PRO A 17 REMARK 465 GLU A 18 REMARK 465 CYS A 19 REMARK 465 PRO A 20 REMARK 465 GLY A 21 REMARK 465 LEU A 22 REMARK 465 ARG A 23 REMARK 465 ALA A 24 REMARK 465 ALA A 25 REMARK 465 PRO A 26 REMARK 465 ARG A 27 REMARK 465 THR A 28 REMARK 465 PRO A 29 REMARK 465 GLY A 30 REMARK 465 PRO A 31 REMARK 465 GLY A 32 REMARK 465 ALA A 33 REMARK 465 GLY A 34 REMARK 465 ARG A 35 REMARK 465 ARG A 36 REMARK 465 ALA A 37 REMARK 465 ALA A 38 REMARK 465 LYS A 39 REMARK 465 LEU A 40 REMARK 465 ARG A 41 REMARK 465 PRO A 42 REMARK 465 GLY A 43 REMARK 465 ARG A 44 REMARK 465 GLY A 45 REMARK 465 TRP A 46 REMARK 465 TRP A 47 REMARK 465 ALA A 48 REMARK 465 LEU A 49 REMARK 465 LEU A 50 REMARK 465 LEU A 51 REMARK 465 LEU A 52 REMARK 465 GLN A 53 REMARK 465 LEU A 54 REMARK 465 HIS A 55 REMARK 465 LEU A 56 REMARK 465 LEU A 57 REMARK 465 ARG A 58 REMARK 465 ALA A 59 REMARK 465 LEU A 60 REMARK 465 ALA A 61 REMARK 465 GLN A 62 REMARK 465 ASP A 63 REMARK 465 MET B -18 REMARK 465 ALA B -17 REMARK 465 ARG B -16 REMARK 465 ALA B -15 REMARK 465 ARG B -14 REMARK 465 PRO B -13 REMARK 465 SER B -12 REMARK 465 VAL B -11 REMARK 465 ALA B -10 REMARK 465 GLY B -9 REMARK 465 GLY B -8 REMARK 465 GLY B -7 REMARK 465 VAL B -6 REMARK 465 ALA B -5 REMARK 465 ALA B -4 REMARK 465 PRO B -3 REMARK 465 PRO B -2 REMARK 465 GLU B -1 REMARK 465 ARG B 0 REMARK 465 ALA B 1 REMARK 465 GLY B 2 REMARK 465 PRO B 3 REMARK 465 GLY B 4 REMARK 465 ARG B 5 REMARK 465 PRO B 6 REMARK 465 ARG B 7 REMARK 465 ARG B 8 REMARK 465 SER B 9 REMARK 465 ARG B 10 REMARK 465 THR B 11 REMARK 465 GLY B 12 REMARK 465 HIS B 13 REMARK 465 HIS B 14 REMARK 465 CYS B 15 REMARK 465 ASP B 16 REMARK 465 PRO B 17 REMARK 465 GLU B 18 REMARK 465 CYS B 19 REMARK 465 PRO B 20 REMARK 465 GLY B 21 REMARK 465 LEU B 22 REMARK 465 ARG B 23 REMARK 465 ALA B 24 REMARK 465 ALA B 25 REMARK 465 PRO B 26 REMARK 465 ARG B 27 REMARK 465 THR B 28 REMARK 465 PRO B 29 REMARK 465 GLY B 30 REMARK 465 PRO B 31 REMARK 465 GLY B 32 REMARK 465 ALA B 33 REMARK 465 GLY B 34 REMARK 465 ARG B 35 REMARK 465 ARG B 36 REMARK 465 ALA B 37 REMARK 465 ALA B 38 REMARK 465 LYS B 39 REMARK 465 LEU B 40 REMARK 465 ARG B 41 REMARK 465 PRO B 42 REMARK 465 GLY B 43 REMARK 465 ARG B 44 REMARK 465 GLY B 45 REMARK 465 TRP B 46 REMARK 465 TRP B 47 REMARK 465 ALA B 48 REMARK 465 LEU B 49 REMARK 465 LEU B 50 REMARK 465 LEU B 51 REMARK 465 LEU B 52 REMARK 465 GLN B 53 REMARK 465 LEU B 54 REMARK 465 HIS B 55 REMARK 465 LEU B 56 REMARK 465 LEU B 57 REMARK 465 ARG B 58 REMARK 465 ALA B 59 REMARK 465 LEU B 60 REMARK 465 ALA B 61 REMARK 465 GLN B 62 REMARK 465 ASP B 63 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS B 392 OE1 GLN B 394 1.56 REMARK 500 CD2 HIS A 291 NH1 ARG A 298 1.76 REMARK 500 ND2 ASN A 104 O HOH A 501 1.95 REMARK 500 CG HIS A 291 NH1 ARG A 298 1.95 REMARK 500 NH2 ARG A 131 O HOH A 502 1.97 REMARK 500 OE2 GLU A 356 O HOH A 503 1.98 REMARK 500 NE2 GLN B 143 O HOH B 501 2.03 REMARK 500 O HOH A 506 O HOH A 518 2.05 REMARK 500 ND2 ASN A 264 O HOH A 504 2.05 REMARK 500 OG SER A 317 O HOH A 505 2.07 REMARK 500 SG CYS B 181 O HOH B 758 2.09 REMARK 500 O HOH B 735 O HOH B 756 2.11 REMARK 500 O HOH A 779 O HOH A 812 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 514 O HOH A 678 2455 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 104 -106.72 51.13 REMARK 500 ASN A 136 -157.21 -132.91 REMARK 500 GLU A 364 -11.37 78.32 REMARK 500 CYS A 371 119.33 -163.31 REMARK 500 LYS A 410 73.36 47.34 REMARK 500 ASN B 104 -107.55 51.56 REMARK 500 GLU B 364 -10.43 77.47 REMARK 500 CYS B 371 82.32 -164.07 REMARK 500 LEU B 401 -179.04 -69.79 REMARK 500 LYS B 410 77.06 39.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 838 DISTANCE = 6.99 ANGSTROMS REMARK 525 HOH B 799 DISTANCE = 6.09 ANGSTROMS DBREF 5XWX A -18 439 UNP Q3UH53 SDK1_MOUSE 1 458 DBREF 5XWX B -18 439 UNP Q3UH53 SDK1_MOUSE 1 458 SEQRES 1 A 458 MET ALA ARG ALA ARG PRO SER VAL ALA GLY GLY GLY VAL SEQRES 2 A 458 ALA ALA PRO PRO GLU ARG ALA GLY PRO GLY ARG PRO ARG SEQRES 3 A 458 ARG SER ARG THR GLY HIS HIS CYS ASP PRO GLU CYS PRO SEQRES 4 A 458 GLY LEU ARG ALA ALA PRO ARG THR PRO GLY PRO GLY ALA SEQRES 5 A 458 GLY ARG ARG ALA ALA LYS LEU ARG PRO GLY ARG GLY TRP SEQRES 6 A 458 TRP ALA LEU LEU LEU LEU GLN LEU HIS LEU LEU ARG ALA SEQRES 7 A 458 LEU ALA GLN ASP ASP VAL ALA PRO TYR PHE LYS THR GLU SEQRES 8 A 458 PRO GLY LEU PRO GLN ILE HIS LEU GLU GLY ASN ARG LEU SEQRES 9 A 458 VAL LEU THR CYS LEU ALA GLU GLY SER TRP PRO LEU GLU SEQRES 10 A 458 PHE LYS TRP ILE ARG ASN ASP SER GLU LEU THR THR TYR SEQRES 11 A 458 SER SER GLU TYR LYS TYR ILE ILE PRO SER LEU GLN LYS SEQRES 12 A 458 LEU ASP ALA GLY PHE TYR ARG CYS VAL VAL ARG ASN ARG SEQRES 13 A 458 MET GLY ALA LEU LEU GLN ARG LYS SER GLU ILE GLN VAL SEQRES 14 A 458 ALA TYR MET GLY ASN PHE MET ASP THR ASP GLN ARG LYS SEQRES 15 A 458 THR VAL SER GLN GLY HIS ALA ALA LEU LEU ASN LEU LEU SEQRES 16 A 458 PRO ILE VAL SER CYS PRO GLN PRO GLN VAL THR TRP PHE SEQRES 17 A 458 ARG GLU GLY HIS LYS ILE ILE PRO SER SER ARG ILE ALA SEQRES 18 A 458 ILE THR LEU GLU ASN GLN LEU VAL ILE LEU ALA THR THR SEQRES 19 A 458 ALA SER ASP ALA GLY ALA TYR TYR VAL GLN ALA VAL ASN SEQRES 20 A 458 GLU LYS ASN GLY GLU ASN LYS THR SER PRO PHE ILE HIS SEQRES 21 A 458 LEU SER VAL ALA ARG ASP THR GLY THR HIS GLU ALA MET SEQRES 22 A 458 ALA PRO ILE ILE VAL VAL ALA PRO GLY ASN ARG SER VAL SEQRES 23 A 458 VAL ALA GLY SER SER GLU THR THR LEU GLU CYS ILE ALA SEQRES 24 A 458 ASN ALA ARG PRO VAL GLU GLU LEU SER VAL HIS TRP LYS SEQRES 25 A 458 ARG ASN GLY VAL ARG LEU THR SER GLY LEU HIS SER TYR SEQRES 26 A 458 GLY ARG ARG LEU THR ILE THR ASN PRO THR SER ALA ASP SEQRES 27 A 458 THR GLY MET TYR VAL CYS GLU ALA THR LEU ARG GLY SER SEQRES 28 A 458 THR PHE GLU PRO ALA ARG ALA ARG ALA PHE LEU SER ILE SEQRES 29 A 458 ILE GLU PRO PRO TYR PHE THR ALA GLU PRO GLU SER ARG SEQRES 30 A 458 ILE LEU GLY GLU VAL GLU GLU THR MET ASP ILE PRO CYS SEQRES 31 A 458 ARG ALA MET GLY VAL PRO LEU PRO THR LEU GLN TRP TYR SEQRES 32 A 458 LYS ASP ALA VAL PRO LEU SER LYS LEU GLN ASN PRO ARG SEQRES 33 A 458 TYR LYS VAL LEU PRO SER GLY GLY LEU HIS ILE GLN LYS SEQRES 34 A 458 LEU SER PRO GLU ASP SER GLY ILE PHE GLN CYS PHE ALA SEQRES 35 A 458 SER ASN GLU GLY GLY GLU VAL GLN THR HIS THR TYR LEU SEQRES 36 A 458 ASP VAL THR SEQRES 1 B 458 MET ALA ARG ALA ARG PRO SER VAL ALA GLY GLY GLY VAL SEQRES 2 B 458 ALA ALA PRO PRO GLU ARG ALA GLY PRO GLY ARG PRO ARG SEQRES 3 B 458 ARG SER ARG THR GLY HIS HIS CYS ASP PRO GLU CYS PRO SEQRES 4 B 458 GLY LEU ARG ALA ALA PRO ARG THR PRO GLY PRO GLY ALA SEQRES 5 B 458 GLY ARG ARG ALA ALA LYS LEU ARG PRO GLY ARG GLY TRP SEQRES 6 B 458 TRP ALA LEU LEU LEU LEU GLN LEU HIS LEU LEU ARG ALA SEQRES 7 B 458 LEU ALA GLN ASP ASP VAL ALA PRO TYR PHE LYS THR GLU SEQRES 8 B 458 PRO GLY LEU PRO GLN ILE HIS LEU GLU GLY ASN ARG LEU SEQRES 9 B 458 VAL LEU THR CYS LEU ALA GLU GLY SER TRP PRO LEU GLU SEQRES 10 B 458 PHE LYS TRP ILE ARG ASN ASP SER GLU LEU THR THR TYR SEQRES 11 B 458 SER SER GLU TYR LYS TYR ILE ILE PRO SER LEU GLN LYS SEQRES 12 B 458 LEU ASP ALA GLY PHE TYR ARG CYS VAL VAL ARG ASN ARG SEQRES 13 B 458 MET GLY ALA LEU LEU GLN ARG LYS SER GLU ILE GLN VAL SEQRES 14 B 458 ALA TYR MET GLY ASN PHE MET ASP THR ASP GLN ARG LYS SEQRES 15 B 458 THR VAL SER GLN GLY HIS ALA ALA LEU LEU ASN LEU LEU SEQRES 16 B 458 PRO ILE VAL SER CYS PRO GLN PRO GLN VAL THR TRP PHE SEQRES 17 B 458 ARG GLU GLY HIS LYS ILE ILE PRO SER SER ARG ILE ALA SEQRES 18 B 458 ILE THR LEU GLU ASN GLN LEU VAL ILE LEU ALA THR THR SEQRES 19 B 458 ALA SER ASP ALA GLY ALA TYR TYR VAL GLN ALA VAL ASN SEQRES 20 B 458 GLU LYS ASN GLY GLU ASN LYS THR SER PRO PHE ILE HIS SEQRES 21 B 458 LEU SER VAL ALA ARG ASP THR GLY THR HIS GLU ALA MET SEQRES 22 B 458 ALA PRO ILE ILE VAL VAL ALA PRO GLY ASN ARG SER VAL SEQRES 23 B 458 VAL ALA GLY SER SER GLU THR THR LEU GLU CYS ILE ALA SEQRES 24 B 458 ASN ALA ARG PRO VAL GLU GLU LEU SER VAL HIS TRP LYS SEQRES 25 B 458 ARG ASN GLY VAL ARG LEU THR SER GLY LEU HIS SER TYR SEQRES 26 B 458 GLY ARG ARG LEU THR ILE THR ASN PRO THR SER ALA ASP SEQRES 27 B 458 THR GLY MET TYR VAL CYS GLU ALA THR LEU ARG GLY SER SEQRES 28 B 458 THR PHE GLU PRO ALA ARG ALA ARG ALA PHE LEU SER ILE SEQRES 29 B 458 ILE GLU PRO PRO TYR PHE THR ALA GLU PRO GLU SER ARG SEQRES 30 B 458 ILE LEU GLY GLU VAL GLU GLU THR MET ASP ILE PRO CYS SEQRES 31 B 458 ARG ALA MET GLY VAL PRO LEU PRO THR LEU GLN TRP TYR SEQRES 32 B 458 LYS ASP ALA VAL PRO LEU SER LYS LEU GLN ASN PRO ARG SEQRES 33 B 458 TYR LYS VAL LEU PRO SER GLY GLY LEU HIS ILE GLN LYS SEQRES 34 B 458 LEU SER PRO GLU ASP SER GLY ILE PHE GLN CYS PHE ALA SEQRES 35 B 458 SER ASN GLU GLY GLY GLU VAL GLN THR HIS THR TYR LEU SEQRES 36 B 458 ASP VAL THR FORMUL 3 HOH *637(H2 O) HELIX 1 AA1 GLN A 123 ALA A 127 5 5 HELIX 2 AA2 THR A 215 ALA A 219 5 5 HELIX 3 AA3 PRO A 284 GLU A 286 5 3 HELIX 4 AA4 THR A 316 THR A 320 5 5 HELIX 5 AA5 LEU A 390 GLN A 394 1 5 HELIX 6 AA6 SER A 412 SER A 416 5 5 HELIX 7 AA7 GLN B 123 ALA B 127 5 5 HELIX 8 AA8 THR B 215 ALA B 219 5 5 HELIX 9 AA9 PRO B 284 GLU B 286 5 3 HELIX 10 AB1 THR B 316 THR B 320 5 5 HELIX 11 AB2 LEU B 390 GLN B 394 1 5 HELIX 12 AB3 SER B 412 SER B 416 5 5 SHEET 1 AA1 2 TYR A 68 PHE A 69 0 SHEET 2 AA1 2 ALA A 91 GLU A 92 -1 O GLU A 92 N TYR A 68 SHEET 1 AA2 4 GLN A 77 LEU A 80 0 SHEET 2 AA2 4 SER A 146 MET A 153 1 O ALA A 151 N HIS A 79 SHEET 3 AA2 4 GLY A 128 ARG A 135 -1 N TYR A 130 O SER A 146 SHEET 4 AA2 4 ALA A 140 LEU A 142 -1 O LEU A 141 N VAL A 134 SHEET 1 AA3 5 SER A 106 GLU A 107 0 SHEET 2 AA3 5 GLU A 98 ARG A 103 -1 N ARG A 103 O SER A 106 SHEET 3 AA3 5 GLY A 128 ARG A 135 -1 O ARG A 131 N ILE A 102 SHEET 4 AA3 5 SER A 146 MET A 153 -1 O SER A 146 N TYR A 130 SHEET 5 AA3 5 SER A 180 CYS A 181 -1 O CYS A 181 N TYR A 152 SHEET 1 AA4 2 LEU A 85 THR A 88 0 SHEET 2 AA4 2 LYS A 116 ILE A 119 -1 O TYR A 117 N LEU A 87 SHEET 1 AA5 5 GLN A 161 SER A 166 0 SHEET 2 AA5 5 ILE A 240 ALA A 245 1 O HIS A 241 N GLN A 161 SHEET 3 AA5 5 GLY A 220 VAL A 227 -1 N GLY A 220 O LEU A 242 SHEET 4 AA5 5 GLN A 185 ARG A 190 -1 N GLN A 185 O VAL A 227 SHEET 5 AA5 5 HIS A 193 LYS A 194 -1 O HIS A 193 N ARG A 190 SHEET 1 AA6 4 GLN A 161 SER A 166 0 SHEET 2 AA6 4 ILE A 240 ALA A 245 1 O HIS A 241 N GLN A 161 SHEET 3 AA6 4 GLY A 220 VAL A 227 -1 N GLY A 220 O LEU A 242 SHEET 4 AA6 4 ASN A 234 THR A 236 -1 O LYS A 235 N ALA A 226 SHEET 1 AA7 3 ALA A 171 LEU A 173 0 SHEET 2 AA7 3 LEU A 209 ILE A 211 -1 O LEU A 209 N LEU A 173 SHEET 3 AA7 3 ILE A 201 ILE A 203 -1 N ALA A 202 O VAL A 210 SHEET 1 AA8 2 MET A 254 VAL A 260 0 SHEET 2 AA8 2 ILE A 279 ARG A 283 -1 O ASN A 281 N ILE A 257 SHEET 1 AA9 5 ARG A 265 VAL A 268 0 SHEET 2 AA9 5 ALA A 337 ALA A 353 1 O ILE A 346 N VAL A 267 SHEET 3 AA9 5 GLY A 321 LEU A 329 -1 N ALA A 327 O ALA A 337 SHEET 4 AA9 5 LEU A 288 ARG A 294 -1 N HIS A 291 O GLU A 326 SHEET 5 AA9 5 VAL A 297 ARG A 298 -1 O VAL A 297 N ARG A 294 SHEET 1 AB1 3 ARG A 265 VAL A 268 0 SHEET 2 AB1 3 ALA A 337 ALA A 353 1 O ILE A 346 N VAL A 267 SHEET 3 AB1 3 ARG A 372 VAL A 376 -1 O ARG A 372 N THR A 352 SHEET 1 AB2 3 GLU A 273 GLU A 277 0 SHEET 2 AB2 3 ARG A 309 THR A 313 -1 O ILE A 312 N THR A 274 SHEET 3 AB2 3 LEU A 303 HIS A 304 -1 N HIS A 304 O ARG A 309 SHEET 1 AB3 5 ARG A 358 GLU A 362 0 SHEET 2 AB3 5 GLY A 428 THR A 439 1 O THR A 439 N GLY A 361 SHEET 3 AB3 5 GLY A 417 ASN A 425 -1 N GLY A 417 O LEU A 436 SHEET 4 AB3 5 THR A 380 LYS A 385 -1 N GLN A 382 O PHE A 422 SHEET 5 AB3 5 VAL A 388 PRO A 389 -1 O VAL A 388 N LYS A 385 SHEET 1 AB4 3 MET A 367 ILE A 369 0 SHEET 2 AB4 3 LEU A 406 ILE A 408 -1 O LEU A 406 N ILE A 369 SHEET 3 AB4 3 TYR A 398 VAL A 400 -1 N LYS A 399 O HIS A 407 SHEET 1 AB5 2 TYR B 68 PHE B 69 0 SHEET 2 AB5 2 ALA B 91 GLU B 92 -1 O GLU B 92 N TYR B 68 SHEET 1 AB6 4 GLN B 77 LEU B 80 0 SHEET 2 AB6 4 SER B 146 MET B 153 1 O ALA B 151 N HIS B 79 SHEET 3 AB6 4 GLY B 128 ARG B 135 -1 N GLY B 128 O ILE B 148 SHEET 4 AB6 4 ALA B 140 LEU B 142 -1 O LEU B 141 N VAL B 134 SHEET 1 AB7 5 SER B 106 GLU B 107 0 SHEET 2 AB7 5 GLU B 98 ARG B 103 -1 N ARG B 103 O SER B 106 SHEET 3 AB7 5 GLY B 128 ARG B 135 -1 O ARG B 131 N ILE B 102 SHEET 4 AB7 5 SER B 146 MET B 153 -1 O ILE B 148 N GLY B 128 SHEET 5 AB7 5 SER B 180 CYS B 181 -1 O CYS B 181 N TYR B 152 SHEET 1 AB8 2 LEU B 85 THR B 88 0 SHEET 2 AB8 2 LYS B 116 ILE B 119 -1 O TYR B 117 N LEU B 87 SHEET 1 AB9 5 GLN B 161 SER B 166 0 SHEET 2 AB9 5 ILE B 240 ALA B 245 1 O HIS B 241 N GLN B 161 SHEET 3 AB9 5 GLY B 220 VAL B 227 -1 N GLY B 220 O LEU B 242 SHEET 4 AB9 5 GLN B 185 ARG B 190 -1 N GLN B 185 O VAL B 227 SHEET 5 AB9 5 HIS B 193 LYS B 194 -1 O HIS B 193 N ARG B 190 SHEET 1 AC1 4 GLN B 161 SER B 166 0 SHEET 2 AC1 4 ILE B 240 ALA B 245 1 O HIS B 241 N GLN B 161 SHEET 3 AC1 4 GLY B 220 VAL B 227 -1 N GLY B 220 O LEU B 242 SHEET 4 AC1 4 ASN B 234 THR B 236 -1 O LYS B 235 N ALA B 226 SHEET 1 AC2 3 ALA B 171 LEU B 173 0 SHEET 2 AC2 3 LEU B 209 ILE B 211 -1 O LEU B 209 N LEU B 173 SHEET 3 AC2 3 ILE B 201 ILE B 203 -1 N ALA B 202 O VAL B 210 SHEET 1 AC3 2 MET B 254 VAL B 260 0 SHEET 2 AC3 2 ILE B 279 ARG B 283 -1 O ASN B 281 N ILE B 257 SHEET 1 AC4 5 ARG B 265 VAL B 268 0 SHEET 2 AC4 5 ALA B 337 ALA B 353 1 O ILE B 346 N VAL B 267 SHEET 3 AC4 5 GLY B 321 LEU B 329 -1 N CYS B 325 O ALA B 339 SHEET 4 AC4 5 LEU B 288 ARG B 294 -1 N HIS B 291 O GLU B 326 SHEET 5 AC4 5 VAL B 297 ARG B 298 -1 O VAL B 297 N ARG B 294 SHEET 1 AC5 3 ARG B 265 VAL B 268 0 SHEET 2 AC5 3 ALA B 337 ALA B 353 1 O ILE B 346 N VAL B 267 SHEET 3 AC5 3 ARG B 372 VAL B 376 -1 O VAL B 376 N GLU B 347 SHEET 1 AC6 3 GLU B 273 GLU B 277 0 SHEET 2 AC6 3 ARG B 309 THR B 313 -1 O ILE B 312 N THR B 274 SHEET 3 AC6 3 LEU B 303 HIS B 304 -1 N HIS B 304 O ARG B 309 SHEET 1 AC7 5 ARG B 358 GLU B 362 0 SHEET 2 AC7 5 GLY B 428 THR B 439 1 O THR B 439 N GLY B 361 SHEET 3 AC7 5 GLY B 417 ASN B 425 -1 N GLY B 417 O LEU B 436 SHEET 4 AC7 5 THR B 380 LYS B 385 -1 N GLN B 382 O PHE B 422 SHEET 5 AC7 5 VAL B 388 PRO B 389 -1 O VAL B 388 N LYS B 385 SHEET 1 AC8 3 MET B 367 ILE B 369 0 SHEET 2 AC8 3 LEU B 406 ILE B 408 -1 O ILE B 408 N MET B 367 SHEET 3 AC8 3 TYR B 398 VAL B 400 -1 N LYS B 399 O HIS B 407 SSBOND 1 CYS A 89 CYS A 132 1555 1555 2.18 SSBOND 2 CYS A 278 CYS A 325 1555 1555 2.02 SSBOND 3 CYS A 371 CYS A 421 1555 1555 2.06 SSBOND 4 CYS B 89 CYS B 132 1555 1555 2.04 SSBOND 5 CYS B 278 CYS B 325 1555 1555 2.03 SSBOND 6 CYS B 371 CYS B 421 1555 1555 1.55 CISPEP 1 TRP A 95 PRO A 96 0 -3.48 CISPEP 2 CYS A 181 PRO A 182 0 -5.53 CISPEP 3 ARG A 283 PRO A 284 0 2.05 CISPEP 4 VAL A 376 PRO A 377 0 -1.65 CISPEP 5 TRP B 95 PRO B 96 0 -4.63 CISPEP 6 CYS B 181 PRO B 182 0 -4.87 CISPEP 7 ARG B 283 PRO B 284 0 -0.47 CISPEP 8 VAL B 376 PRO B 377 0 -3.39 CRYST1 63.851 118.062 122.842 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015661 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008470 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008141 0.00000