HEADER CELL ADHESION 30-JUN-17 5XX0 TITLE CRYSTAL STRUCTURE OF THE FOUR N-TERMINAL IMMUNOGLOGULIN DOMAINS OF TITLE 2 SIDEKICK-2 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN SIDEKICK-2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-403; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: SDK2, KIAA1514; SOURCE 6 EXPRESSION_SYSTEM: INSECT CELL EXPRESSION VECTOR PTIE1; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 266783 KEYWDS CELL-CELL ADHESION, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR Y.DONG,H.TANG,Y.HE REVDAT 4 22-NOV-23 5XX0 1 REMARK REVDAT 3 26-SEP-18 5XX0 1 JRNL REVDAT 2 19-SEP-18 5XX0 1 JRNL REVDAT 1 29-AUG-18 5XX0 0 JRNL AUTH H.TANG,H.CHANG,Y.DONG,L.GUO,X.SHI,Y.WU,Y.HUANG,Y.HE JRNL TITL ARCHITECTURE OF CELL-CELL ADHESION MEDIATED BY SIDEKICKS. JRNL REF PROC. NATL. ACAD. SCI. V. 115 9246 2018 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 30150416 JRNL DOI 10.1073/PNAS.1801810115 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1690 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.430 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 30490 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.600 REMARK 3 FREE R VALUE TEST SET COUNT : 2012 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.8035 - 5.7640 0.98 2179 152 0.2099 0.2476 REMARK 3 2 5.7640 - 4.5810 0.99 2087 147 0.1793 0.2407 REMARK 3 3 4.5810 - 4.0037 0.98 2076 147 0.1756 0.2405 REMARK 3 4 4.0037 - 3.6384 1.00 2073 150 0.2045 0.2865 REMARK 3 5 3.6384 - 3.3780 0.99 2073 140 0.2321 0.2942 REMARK 3 6 3.3780 - 3.1791 0.99 2021 151 0.2643 0.3102 REMARK 3 7 3.1791 - 3.0201 0.99 2055 151 0.2707 0.3480 REMARK 3 8 3.0201 - 2.8888 0.99 2035 139 0.2692 0.2944 REMARK 3 9 2.8888 - 2.7777 0.99 2026 137 0.2699 0.3012 REMARK 3 10 2.7777 - 2.6819 0.98 2018 152 0.2826 0.3497 REMARK 3 11 2.6819 - 2.5981 0.97 1993 128 0.2981 0.3817 REMARK 3 12 2.5981 - 2.5239 0.96 1960 139 0.3177 0.3540 REMARK 3 13 2.5239 - 2.4574 0.97 1995 152 0.3395 0.3717 REMARK 3 14 2.4574 - 2.3975 0.92 1887 127 0.3544 0.3418 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 5907 REMARK 3 ANGLE : 0.845 8031 REMARK 3 CHIRALITY : 0.032 909 REMARK 3 PLANARITY : 0.004 1044 REMARK 3 DIHEDRAL : 13.595 2210 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 180.0905 110.1279 26.2561 REMARK 3 T TENSOR REMARK 3 T11: 0.3868 T22: 0.2832 REMARK 3 T33: 0.3372 T12: 0.0638 REMARK 3 T13: 0.0034 T23: -0.0094 REMARK 3 L TENSOR REMARK 3 L11: 1.1523 L22: 0.6868 REMARK 3 L33: 1.0698 L12: 0.3385 REMARK 3 L13: -0.2827 L23: 0.0124 REMARK 3 S TENSOR REMARK 3 S11: -0.0512 S12: -0.1793 S13: -0.0418 REMARK 3 S21: 0.1099 S22: 0.0784 S23: -0.0510 REMARK 3 S31: 0.0641 S32: 0.2201 S33: -0.0362 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5XX0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1300004301. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30490 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.2100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.44000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.670 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: 5XWX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MGCL2, 0.1M BIS-TRIS, PH5.5, 25% REMARK 280 PEG 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.17800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.27650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.40050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.27650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.17800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.40050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PHE A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 MET A 5 REMARK 465 TRP A 6 REMARK 465 ARG A 7 REMARK 465 LEU A 8 REMARK 465 PRO A 9 REMARK 465 LEU A 10 REMARK 465 TRP A 11 REMARK 465 THR A 12 REMARK 465 LEU A 13 REMARK 465 LEU A 14 REMARK 465 ALA A 15 REMARK 465 LEU A 16 REMARK 465 HIS A 17 REMARK 465 ARG A 18 REMARK 465 ILE A 19 REMARK 465 HIS A 20 REMARK 465 SER A 21 REMARK 465 ALA A 22 REMARK 465 GLY A 23 REMARK 465 ALA A 24 REMARK 465 GLN A 25 REMARK 465 ASP A 26 REMARK 465 MET B 1 REMARK 465 PHE B 2 REMARK 465 SER B 3 REMARK 465 SER B 4 REMARK 465 MET B 5 REMARK 465 TRP B 6 REMARK 465 ARG B 7 REMARK 465 LEU B 8 REMARK 465 PRO B 9 REMARK 465 LEU B 10 REMARK 465 TRP B 11 REMARK 465 THR B 12 REMARK 465 LEU B 13 REMARK 465 LEU B 14 REMARK 465 ALA B 15 REMARK 465 LEU B 16 REMARK 465 HIS B 17 REMARK 465 ARG B 18 REMARK 465 ILE B 19 REMARK 465 HIS B 20 REMARK 465 SER B 21 REMARK 465 ALA B 22 REMARK 465 GLY B 23 REMARK 465 ALA B 24 REMARK 465 GLN B 25 REMARK 465 ASP B 26 REMARK 465 GLU B 208 REMARK 465 ASN B 209 REMARK 465 VAL B 210 REMARK 465 GLY B 211 REMARK 465 GLY B 212 REMARK 465 PRO B 213 REMARK 465 ALA B 214 REMARK 465 ARG B 293 REMARK 465 SER B 294 REMARK 465 SER B 295 REMARK 465 SER B 296 REMARK 465 VAL B 297 REMARK 465 ALA B 298 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 329 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 360 OD2 ASP B 378 1.42 REMARK 500 SG CYS B 241 SG CYS B 288 1.77 REMARK 500 CG ARG A 320 O HOH A 518 1.80 REMARK 500 O VAL A 231 OG1 THR A 234 1.84 REMARK 500 CG2 VAL A 28 OG SER A 57 1.85 REMARK 500 NH2 ARG B 360 CG ASP B 378 1.92 REMARK 500 N VAL A 28 OG SER A 57 2.02 REMARK 500 NH2 ARG B 360 OD1 ASP B 378 2.04 REMARK 500 OH TYR B 285 OE2 GLU B 287 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O SER A 403 O HOH A 502 1655 1.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 59 C - N - CD ANGL. DEV. = 18.5 DEGREES REMARK 500 PRO A 318 C - N - CD ANGL. DEV. = 12.8 DEGREES REMARK 500 PRO B 29 C - N - CD ANGL. DEV. = 12.7 DEGREES REMARK 500 PRO B 30 C - N - CD ANGL. DEV. = 12.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 153 116.47 -163.13 REMARK 500 SER A 176 61.04 38.62 REMARK 500 ASP A 268 -139.28 58.48 REMARK 500 TYR A 269 53.51 -108.84 REMARK 500 SER A 295 -160.85 -111.95 REMARK 500 LEU A 374 107.77 -59.30 REMARK 500 THR A 402 -155.78 -133.77 REMARK 500 PRO B 29 -160.19 -100.69 REMARK 500 PRO B 216 -170.62 -64.69 REMARK 500 CYS B 241 108.87 -165.58 REMARK 500 ASP B 258 27.83 49.23 REMARK 500 LYS B 357 -81.91 -59.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 554 DISTANCE = 5.93 ANGSTROMS DBREF 5XX0 A 1 403 UNP Q6V4S5 SDK2_MOUSE 1 403 DBREF 5XX0 B 1 403 UNP Q6V4S5 SDK2_MOUSE 1 403 SEQRES 1 A 403 MET PHE SER SER MET TRP ARG LEU PRO LEU TRP THR LEU SEQRES 2 A 403 LEU ALA LEU HIS ARG ILE HIS SER ALA GLY ALA GLN ASP SEQRES 3 A 403 ASP VAL PRO PRO TYR PHE LYS THR GLU PRO VAL ARG THR SEQRES 4 A 403 GLN VAL HIS LEU GLU GLY ASN ARG LEU VAL LEU THR CYS SEQRES 5 A 403 MET ALA GLU GLY SER TRP PRO LEU GLU PHE LYS TRP LEU SEQRES 6 A 403 HIS ASN ASN ARG GLU LEU THR ARG PHE SER LEU GLU TYR SEQRES 7 A 403 ARG TYR MET ILE THR SER LEU ASP ARG THR HIS ALA GLY SEQRES 8 A 403 PHE TYR ARG CYS ILE VAL ARG ASN ARG MET GLY ALA LEU SEQRES 9 A 403 LEU GLN ARG GLN THR GLU VAL GLN VAL ALA TYR MET GLY SEQRES 10 A 403 SER PHE GLU GLU GLY GLU LYS ARG GLN SER VAL ASN HIS SEQRES 11 A 403 GLY GLU ALA ALA VAL ILE ARG ALA PRO ARG ILE SER SER SEQRES 12 A 403 PHE PRO ARG PRO GLN VAL THR TRP PHE ARG ASP GLY ARG SEQRES 13 A 403 LYS ILE PRO PRO SER SER ARG ILE ALA ILE THR LEU GLU SEQRES 14 A 403 ASN THR LEU VAL ILE LEU SER THR VAL ALA PRO ASP ALA SEQRES 15 A 403 GLY ARG TYR TYR VAL GLN ALA VAL ASN ASP LYS ASN GLY SEQRES 16 A 403 ASP ASN LYS THR SER GLN PRO ILE THR LEU ALA VAL GLU SEQRES 17 A 403 ASN VAL GLY GLY PRO ALA ASP PRO ILE ALA PRO THR ILE SEQRES 18 A 403 ILE ILE PRO PRO LYS ASN THR SER VAL VAL ALA GLY THR SEQRES 19 A 403 SER GLU VAL THR MET GLU CYS VAL ALA ASN ALA ARG PRO SEQRES 20 A 403 LEU ILE LYS LEU HIS ILE VAL TRP LYS LYS ASP GLY ALA SEQRES 21 A 403 PRO LEU SER SER GLY ILE SER ASP TYR ASN ARG ARG LEU SEQRES 22 A 403 THR ILE ALA ASN PRO THR VAL SER ASP ALA GLY TYR TYR SEQRES 23 A 403 GLU CYS GLU ALA MET LEU ARG SER SER SER VAL ALA PRO SEQRES 24 A 403 VAL THR ARG GLY ALA TYR LEU SER VAL LEU GLU PRO PRO SEQRES 25 A 403 GLN PHE VAL ARG GLU PRO GLU ARG HIS ILE THR ALA GLU SEQRES 26 A 403 MET GLU LYS VAL VAL ASP ILE PRO CYS ARG ALA LYS GLY SEQRES 27 A 403 VAL PRO PRO PRO SER ILE THR TRP TYR LYS ASP ALA ALA SEQRES 28 A 403 LEU VAL GLU VAL GLY LYS LEU THR ARG PHE LYS GLN ARG SEQRES 29 A 403 SER ASP GLY GLY LEU GLN ILE SER GLY LEU LEU PRO ASP SEQRES 30 A 403 ASP THR GLY MET LEU GLN CYS PHE ALA HIS ASN ALA ALA SEQRES 31 A 403 GLY GLU ALA GLN THR SER THR TYR LEU ALA VAL THR SER SEQRES 1 B 403 MET PHE SER SER MET TRP ARG LEU PRO LEU TRP THR LEU SEQRES 2 B 403 LEU ALA LEU HIS ARG ILE HIS SER ALA GLY ALA GLN ASP SEQRES 3 B 403 ASP VAL PRO PRO TYR PHE LYS THR GLU PRO VAL ARG THR SEQRES 4 B 403 GLN VAL HIS LEU GLU GLY ASN ARG LEU VAL LEU THR CYS SEQRES 5 B 403 MET ALA GLU GLY SER TRP PRO LEU GLU PHE LYS TRP LEU SEQRES 6 B 403 HIS ASN ASN ARG GLU LEU THR ARG PHE SER LEU GLU TYR SEQRES 7 B 403 ARG TYR MET ILE THR SER LEU ASP ARG THR HIS ALA GLY SEQRES 8 B 403 PHE TYR ARG CYS ILE VAL ARG ASN ARG MET GLY ALA LEU SEQRES 9 B 403 LEU GLN ARG GLN THR GLU VAL GLN VAL ALA TYR MET GLY SEQRES 10 B 403 SER PHE GLU GLU GLY GLU LYS ARG GLN SER VAL ASN HIS SEQRES 11 B 403 GLY GLU ALA ALA VAL ILE ARG ALA PRO ARG ILE SER SER SEQRES 12 B 403 PHE PRO ARG PRO GLN VAL THR TRP PHE ARG ASP GLY ARG SEQRES 13 B 403 LYS ILE PRO PRO SER SER ARG ILE ALA ILE THR LEU GLU SEQRES 14 B 403 ASN THR LEU VAL ILE LEU SER THR VAL ALA PRO ASP ALA SEQRES 15 B 403 GLY ARG TYR TYR VAL GLN ALA VAL ASN ASP LYS ASN GLY SEQRES 16 B 403 ASP ASN LYS THR SER GLN PRO ILE THR LEU ALA VAL GLU SEQRES 17 B 403 ASN VAL GLY GLY PRO ALA ASP PRO ILE ALA PRO THR ILE SEQRES 18 B 403 ILE ILE PRO PRO LYS ASN THR SER VAL VAL ALA GLY THR SEQRES 19 B 403 SER GLU VAL THR MET GLU CYS VAL ALA ASN ALA ARG PRO SEQRES 20 B 403 LEU ILE LYS LEU HIS ILE VAL TRP LYS LYS ASP GLY ALA SEQRES 21 B 403 PRO LEU SER SER GLY ILE SER ASP TYR ASN ARG ARG LEU SEQRES 22 B 403 THR ILE ALA ASN PRO THR VAL SER ASP ALA GLY TYR TYR SEQRES 23 B 403 GLU CYS GLU ALA MET LEU ARG SER SER SER VAL ALA PRO SEQRES 24 B 403 VAL THR ARG GLY ALA TYR LEU SER VAL LEU GLU PRO PRO SEQRES 25 B 403 GLN PHE VAL ARG GLU PRO GLU ARG HIS ILE THR ALA GLU SEQRES 26 B 403 MET GLU LYS VAL VAL ASP ILE PRO CYS ARG ALA LYS GLY SEQRES 27 B 403 VAL PRO PRO PRO SER ILE THR TRP TYR LYS ASP ALA ALA SEQRES 28 B 403 LEU VAL GLU VAL GLY LYS LEU THR ARG PHE LYS GLN ARG SEQRES 29 B 403 SER ASP GLY GLY LEU GLN ILE SER GLY LEU LEU PRO ASP SEQRES 30 B 403 ASP THR GLY MET LEU GLN CYS PHE ALA HIS ASN ALA ALA SEQRES 31 B 403 GLY GLU ALA GLN THR SER THR TYR LEU ALA VAL THR SER FORMUL 3 HOH *100(H2 O) HELIX 1 AA1 ASP A 86 ALA A 90 5 5 HELIX 2 AA2 VAL A 178 ALA A 182 5 5 HELIX 3 AA3 PRO A 247 ILE A 249 5 3 HELIX 4 AA4 LEU A 375 THR A 379 5 5 HELIX 5 AA5 ASP B 86 ALA B 90 5 5 HELIX 6 AA6 VAL B 178 ALA B 182 5 5 HELIX 7 AA7 PRO B 247 LEU B 251 5 5 HELIX 8 AA8 THR B 279 ALA B 283 5 5 HELIX 9 AA9 LEU B 375 THR B 379 5 5 SHEET 1 AA1 2 TYR A 31 PHE A 32 0 SHEET 2 AA1 2 ALA A 54 GLU A 55 -1 O GLU A 55 N TYR A 31 SHEET 1 AA2 4 THR A 39 LEU A 43 0 SHEET 2 AA2 4 THR A 109 MET A 116 1 O ALA A 114 N HIS A 42 SHEET 3 AA2 4 GLY A 91 ASN A 99 -1 N TYR A 93 O THR A 109 SHEET 4 AA2 4 GLY A 102 LEU A 105 -1 O LEU A 104 N VAL A 97 SHEET 1 AA3 5 ARG A 69 GLU A 70 0 SHEET 2 AA3 5 GLU A 61 HIS A 66 -1 N HIS A 66 O ARG A 69 SHEET 3 AA3 5 GLY A 91 ASN A 99 -1 O ARG A 94 N LEU A 65 SHEET 4 AA3 5 THR A 109 MET A 116 -1 O THR A 109 N TYR A 93 SHEET 5 AA3 5 SER A 143 PHE A 144 -1 O PHE A 144 N TYR A 115 SHEET 1 AA4 2 LEU A 48 THR A 51 0 SHEET 2 AA4 2 ARG A 79 ILE A 82 -1 O TYR A 80 N LEU A 50 SHEET 1 AA5 5 LYS A 124 ASN A 129 0 SHEET 2 AA5 5 ILE A 203 GLU A 208 1 O GLU A 208 N VAL A 128 SHEET 3 AA5 5 GLY A 183 VAL A 190 -1 N TYR A 185 O ILE A 203 SHEET 4 AA5 5 GLN A 148 ARG A 153 -1 N PHE A 152 O TYR A 186 SHEET 5 AA5 5 ARG A 156 LYS A 157 -1 O ARG A 156 N ARG A 153 SHEET 1 AA6 4 LYS A 124 ASN A 129 0 SHEET 2 AA6 4 ILE A 203 GLU A 208 1 O GLU A 208 N VAL A 128 SHEET 3 AA6 4 GLY A 183 VAL A 190 -1 N TYR A 185 O ILE A 203 SHEET 4 AA6 4 ASN A 197 THR A 199 -1 O LYS A 198 N ALA A 189 SHEET 1 AA7 3 ALA A 134 ILE A 136 0 SHEET 2 AA7 3 LEU A 172 ILE A 174 -1 O LEU A 172 N ILE A 136 SHEET 3 AA7 3 ILE A 164 ILE A 166 -1 N ALA A 165 O VAL A 173 SHEET 1 AA8 2 ILE A 217 ILE A 223 0 SHEET 2 AA8 2 VAL A 242 ARG A 246 -1 O ASN A 244 N THR A 220 SHEET 1 AA9 5 THR A 228 VAL A 231 0 SHEET 2 AA9 5 VAL A 300 ARG A 316 1 O TYR A 305 N THR A 228 SHEET 3 AA9 5 GLY A 284 LEU A 292 -1 N TYR A 286 O ALA A 304 SHEET 4 AA9 5 LEU A 251 LYS A 257 -1 N HIS A 252 O MET A 291 SHEET 5 AA9 5 ALA A 260 PRO A 261 -1 O ALA A 260 N LYS A 257 SHEET 1 AB1 3 THR A 228 VAL A 231 0 SHEET 2 AB1 3 VAL A 300 ARG A 316 1 O TYR A 305 N THR A 228 SHEET 3 AB1 3 ARG A 335 VAL A 339 -1 O ARG A 335 N VAL A 315 SHEET 1 AB2 3 GLU A 236 GLU A 240 0 SHEET 2 AB2 3 ARG A 272 ALA A 276 -1 O LEU A 273 N MET A 239 SHEET 3 AB2 3 ILE A 266 SER A 267 -1 N SER A 267 O ARG A 272 SHEET 1 AB3 4 ILE A 322 GLU A 325 0 SHEET 2 AB3 4 GLY A 391 THR A 402 1 O TYR A 398 N ILE A 322 SHEET 3 AB3 4 GLY A 380 ASN A 388 -1 N LEU A 382 O THR A 397 SHEET 4 AB3 4 SER A 343 LYS A 348 -1 N THR A 345 O PHE A 385 SHEET 1 AB4 3 VAL A 330 ILE A 332 0 SHEET 2 AB4 3 LEU A 369 ILE A 371 -1 O LEU A 369 N ILE A 332 SHEET 3 AB4 3 PHE A 361 GLN A 363 -1 N LYS A 362 O GLN A 370 SHEET 1 AB5 2 TYR B 31 PHE B 32 0 SHEET 2 AB5 2 ALA B 54 GLU B 55 -1 O GLU B 55 N TYR B 31 SHEET 1 AB6 4 THR B 39 LEU B 43 0 SHEET 2 AB6 4 THR B 109 MET B 116 1 O ALA B 114 N HIS B 42 SHEET 3 AB6 4 GLY B 91 ASN B 99 -1 N TYR B 93 O THR B 109 SHEET 4 AB6 4 GLY B 102 LEU B 105 -1 O GLY B 102 N ASN B 99 SHEET 1 AB7 5 ARG B 69 GLU B 70 0 SHEET 2 AB7 5 GLU B 61 HIS B 66 -1 N HIS B 66 O ARG B 69 SHEET 3 AB7 5 GLY B 91 ASN B 99 -1 O ARG B 98 N GLU B 61 SHEET 4 AB7 5 THR B 109 MET B 116 -1 O THR B 109 N TYR B 93 SHEET 5 AB7 5 SER B 143 PHE B 144 -1 O PHE B 144 N TYR B 115 SHEET 1 AB8 2 LEU B 48 THR B 51 0 SHEET 2 AB8 2 ARG B 79 ILE B 82 -1 O ILE B 82 N LEU B 48 SHEET 1 AB9 5 LYS B 124 SER B 127 0 SHEET 2 AB9 5 ILE B 203 ALA B 206 1 O THR B 204 N LYS B 124 SHEET 3 AB9 5 GLY B 183 VAL B 190 -1 N TYR B 185 O ILE B 203 SHEET 4 AB9 5 GLN B 148 ARG B 153 -1 N PHE B 152 O TYR B 186 SHEET 5 AB9 5 ARG B 156 LYS B 157 -1 O ARG B 156 N ARG B 153 SHEET 1 AC1 4 LYS B 124 SER B 127 0 SHEET 2 AC1 4 ILE B 203 ALA B 206 1 O THR B 204 N LYS B 124 SHEET 3 AC1 4 GLY B 183 VAL B 190 -1 N TYR B 185 O ILE B 203 SHEET 4 AC1 4 ASN B 197 THR B 199 -1 O LYS B 198 N ALA B 189 SHEET 1 AC2 3 ALA B 134 ILE B 136 0 SHEET 2 AC2 3 LEU B 172 ILE B 174 -1 O LEU B 172 N ILE B 136 SHEET 3 AC2 3 ILE B 164 ILE B 166 -1 N ALA B 165 O VAL B 173 SHEET 1 AC3 2 ILE B 217 ILE B 223 0 SHEET 2 AC3 2 VAL B 242 ARG B 246 -1 O ASN B 244 N THR B 220 SHEET 1 AC4 5 THR B 228 VAL B 231 0 SHEET 2 AC4 5 VAL B 300 ARG B 316 1 O SER B 307 N THR B 228 SHEET 3 AC4 5 GLY B 284 MET B 291 -1 N ALA B 290 O VAL B 300 SHEET 4 AC4 5 HIS B 252 LYS B 257 -1 N HIS B 252 O MET B 291 SHEET 5 AC4 5 ALA B 260 PRO B 261 -1 O ALA B 260 N LYS B 257 SHEET 1 AC5 3 THR B 228 VAL B 231 0 SHEET 2 AC5 3 VAL B 300 ARG B 316 1 O SER B 307 N THR B 228 SHEET 3 AC5 3 ARG B 335 VAL B 339 -1 O LYS B 337 N GLN B 313 SHEET 1 AC6 3 GLU B 236 GLU B 240 0 SHEET 2 AC6 3 ARG B 272 ALA B 276 -1 O ILE B 275 N VAL B 237 SHEET 3 AC6 3 ILE B 266 SER B 267 -1 N SER B 267 O ARG B 272 SHEET 1 AC7 4 HIS B 321 GLU B 325 0 SHEET 2 AC7 4 GLY B 391 THR B 402 1 O THR B 402 N ALA B 324 SHEET 3 AC7 4 GLY B 380 ASN B 388 -1 N LEU B 382 O THR B 397 SHEET 4 AC7 4 SER B 343 LYS B 348 -1 N THR B 345 O PHE B 385 SHEET 1 AC8 3 VAL B 330 ILE B 332 0 SHEET 2 AC8 3 LEU B 369 ILE B 371 -1 O LEU B 369 N ILE B 332 SHEET 3 AC8 3 PHE B 361 GLN B 363 -1 N LYS B 362 O GLN B 370 SSBOND 1 CYS A 52 CYS A 95 1555 1555 2.03 SSBOND 2 CYS A 241 CYS A 288 1555 1555 2.03 SSBOND 3 CYS A 334 CYS A 384 1555 1555 2.03 SSBOND 4 CYS B 52 CYS B 95 1555 1555 2.03 SSBOND 5 CYS B 334 CYS B 384 1555 1555 2.03 CISPEP 1 TRP A 58 PRO A 59 0 -0.03 CISPEP 2 PHE A 144 PRO A 145 0 -5.01 CISPEP 3 ARG A 246 PRO A 247 0 -0.49 CISPEP 4 MET A 326 GLU A 327 0 2.38 CISPEP 5 VAL A 339 PRO A 340 0 -2.43 CISPEP 6 TRP B 58 PRO B 59 0 -2.48 CISPEP 7 PHE B 144 PRO B 145 0 -5.51 CISPEP 8 ASP B 154 GLY B 155 0 0.00 CISPEP 9 ARG B 246 PRO B 247 0 -6.26 CISPEP 10 VAL B 339 PRO B 340 0 -1.35 CRYST1 82.356 86.801 108.553 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012142 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011521 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009212 0.00000