HEADER HYDROLASE 01-JUL-17 5XX2 TITLE A BPTI-[5,55] VARIANT WITH C14GA38L MUTATIONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PANCREATIC TRYPSIN INHIBITOR; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: APROTININ,BASIC PROTEASE INHIBITOR,BPTI; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE INHIBITOR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.M.ISLAM REVDAT 3 22-NOV-23 5XX2 1 REMARK REVDAT 2 17-JUL-19 5XX2 1 JRNL REVDAT 1 04-JUL-18 5XX2 0 JRNL AUTH M.M.ISLAM,K.KOBAYASHI,S.I.KIDOKORO,Y.KURODA JRNL TITL HYDROPHOBIC SURFACE RESIDUES CAN STABILIZE A PROTEIN THROUGH JRNL TITL 2 IMPROVED WATER-PROTEIN INTERACTIONS. JRNL REF FEBS J. 2019 JRNL REFN ISSN 1742-464X JRNL PMID 31175706 JRNL DOI 10.1111/FEBS.14941 REMARK 2 REMARK 2 RESOLUTION. 1.12 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.12 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.15 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 61177 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.131 REMARK 3 R VALUE (WORKING SET) : 0.130 REMARK 3 FREE R VALUE : 0.146 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3274 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4333 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.1960 REMARK 3 BIN FREE R VALUE SET COUNT : 242 REMARK 3 BIN FREE R VALUE : 0.2300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 902 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 349 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 8.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.07000 REMARK 3 B22 (A**2) : -0.05000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.14000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.022 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.022 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.013 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.537 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.968 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 968 ; 0.038 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 904 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1308 ; 2.988 ; 1.996 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2066 ; 0.995 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 118 ; 6.572 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 46 ;21.182 ;20.435 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 150 ; 9.528 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ; 9.717 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 130 ; 0.185 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1090 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 252 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 466 ; 0.680 ; 0.483 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 465 ; 0.683 ; 0.482 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 580 ; 0.788 ; 0.733 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 581 ; 0.788 ; 0.734 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 502 ; 1.765 ; 0.630 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 503 ; 1.764 ; 0.631 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 727 ; 1.576 ; 0.894 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1504 ; 4.157 ; 7.762 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1196 ; 2.513 ; 5.147 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1872 ; 6.843 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 28 ;35.759 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2184 ;11.547 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5XX2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1300004307. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 101 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : AGILENT EOS CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67481 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.000 REMARK 200 RESOLUTION RANGE LOW (A) : 61.150 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.3200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.28900 REMARK 200 R SYM FOR SHELL (I) : 0.28900 REMARK 200 FOR SHELL : 6.320 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 2ZVX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG4000; 0.2M LITHIUM SULFATE; REMARK 280 0.1M TRIS-HCL, PH8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 20.34500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 222 O HOH A 313 1.43 REMARK 500 O HOH A 211 O HOH A 267 1.44 REMARK 500 O HOH B 212 O HOH B 302 1.45 REMARK 500 O HOH A 280 O HOH A 308 1.69 REMARK 500 O HOH A 211 O HOH A 319 1.72 REMARK 500 O HOH A 204 O HOH A 279 1.78 REMARK 500 O HOH A 270 O HOH B 202 1.82 REMARK 500 OH TYR A 10 O HOH A 201 1.83 REMARK 500 O HOH A 294 O HOH A 332 1.87 REMARK 500 O HOH A 212 O HOH A 267 1.91 REMARK 500 O HOH A 244 O HOH A 344 1.91 REMARK 500 OH TYR B 10 O HOH B 201 1.94 REMARK 500 O HOH B 263 O HOH B 296 1.97 REMARK 500 O HOH B 269 O HOH B 287 2.07 REMARK 500 O HOH A 206 O HOH A 224 2.07 REMARK 500 O HOH A 233 O HOH A 288 2.11 REMARK 500 O HOH B 337 O HOH B 352 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 250 O HOH B 323 1655 1.22 REMARK 500 O HOH B 349 O HOH B 365 1655 1.34 REMARK 500 O HOH A 371 O HOH A 385 1455 1.38 REMARK 500 O HOH A 289 O HOH A 317 2555 1.44 REMARK 500 O HOH A 378 O HOH A 382 2545 1.50 REMARK 500 O HOH B 333 O HOH B 337 2656 1.53 REMARK 500 O HOH A 372 O HOH B 356 1455 1.62 REMARK 500 O HOH A 259 O HOH A 294 1455 1.62 REMARK 500 O HOH A 306 O HOH A 323 2555 1.70 REMARK 500 O HOH A 214 O HOH B 318 1455 1.71 REMARK 500 O HOH A 237 O HOH A 344 2545 1.82 REMARK 500 O HOH A 202 O HOH A 221 1455 1.82 REMARK 500 OG1 THR A 32 O HOH A 323 2555 1.89 REMARK 500 O HOH B 323 O HOH B 357 1455 1.89 REMARK 500 OE2 GLU A 49 O HOH A 202 1655 1.95 REMARK 500 O HOH A 308 O HOH A 330 1655 2.04 REMARK 500 O HOH A 345 O HOH B 318 1455 2.05 REMARK 500 O HOH A 334 O HOH A 373 2545 2.12 REMARK 500 O HOH A 247 O HOH A 344 2545 2.13 REMARK 500 O HOH A 295 O HOH A 373 2545 2.16 REMARK 500 O HOH B 345 O HOH B 368 1655 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 10 CD1 TYR A 10 CE1 -0.108 REMARK 500 TYR A 10 CE1 TYR A 10 CZ -0.639 REMARK 500 TYR A 10 CZ TYR A 10 OH 0.166 REMARK 500 TYR A 10 CZ TYR A 10 CE2 -0.179 REMARK 500 TYR A 10 CE2 TYR A 10 CD2 0.650 REMARK 500 ARG A 17 CZ ARG A 17 NH2 0.104 REMARK 500 TYR B 10 CE1 TYR B 10 CZ -0.203 REMARK 500 TYR B 10 CE2 TYR B 10 CD2 0.183 REMARK 500 ARG B 17 CZ ARG B 17 NH2 0.099 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 10 CG - CD1 - CE1 ANGL. DEV. = 6.8 DEGREES REMARK 500 TYR A 10 CG - CD2 - CE2 ANGL. DEV. = -19.1 DEGREES REMARK 500 TYR A 10 CD1 - CE1 - CZ ANGL. DEV. = 15.7 DEGREES REMARK 500 TYR A 10 CZ - CE2 - CD2 ANGL. DEV. = -9.5 DEGREES REMARK 500 ARG A 17 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 17 NE - CZ - NH1 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG A 17 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG A 20 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG A 39 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 39 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG B 1 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 TYR B 10 CB - CG - CD2 ANGL. DEV. = 11.2 DEGREES REMARK 500 TYR B 10 CB - CG - CD2 ANGL. DEV. = -4.5 DEGREES REMARK 500 TYR B 10 CB - CG - CD1 ANGL. DEV. = -7.8 DEGREES REMARK 500 TYR B 10 CG - CD1 - CE1 ANGL. DEV. = 9.4 DEGREES REMARK 500 TYR B 10 CG - CD2 - CE2 ANGL. DEV. = -8.1 DEGREES REMARK 500 ARG B 17 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 17 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG B 20 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 44 105.46 -161.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 380 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A 381 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH A 382 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH A 383 DISTANCE = 6.42 ANGSTROMS REMARK 525 HOH A 384 DISTANCE = 6.59 ANGSTROMS REMARK 525 HOH A 385 DISTANCE = 6.70 ANGSTROMS REMARK 525 HOH A 386 DISTANCE = 6.88 ANGSTROMS REMARK 525 HOH A 387 DISTANCE = 7.00 ANGSTROMS REMARK 525 HOH B 363 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH B 364 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH B 365 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH B 366 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH B 367 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH B 368 DISTANCE = 6.53 ANGSTROMS REMARK 525 HOH B 369 DISTANCE = 6.66 ANGSTROMS REMARK 525 HOH B 371 DISTANCE = 7.06 ANGSTROMS REMARK 525 HOH B 372 DISTANCE = 7.46 ANGSTROMS REMARK 525 HOH B 373 DISTANCE = 7.87 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 102 DBREF 5XX2 A 1 58 UNP P00974 BPT1_BOVIN 36 93 DBREF 5XX2 B 1 58 UNP P00974 BPT1_BOVIN 36 93 SEQADV 5XX2 GLY A 14 UNP P00974 CYS 49 ENGINEERED MUTATION SEQADV 5XX2 ALA A 30 UNP P00974 CYS 65 ENGINEERED MUTATION SEQADV 5XX2 LEU A 38 UNP P00974 CYS 73 ENGINEERED MUTATION SEQADV 5XX2 ALA A 51 UNP P00974 CYS 86 ENGINEERED MUTATION SEQADV 5XX2 LEU A 52 UNP P00974 MET 87 ENGINEERED MUTATION SEQADV 5XX2 GLY B 14 UNP P00974 CYS 49 ENGINEERED MUTATION SEQADV 5XX2 ALA B 30 UNP P00974 CYS 65 ENGINEERED MUTATION SEQADV 5XX2 LEU B 38 UNP P00974 CYS 73 ENGINEERED MUTATION SEQADV 5XX2 ALA B 51 UNP P00974 CYS 86 ENGINEERED MUTATION SEQADV 5XX2 LEU B 52 UNP P00974 MET 87 ENGINEERED MUTATION SEQRES 1 A 58 ARG PRO ASP PHE CYS LEU GLU PRO PRO TYR THR GLY PRO SEQRES 2 A 58 GLY LYS ALA ARG ILE ILE ARG TYR PHE TYR ASN ALA LYS SEQRES 3 A 58 ALA GLY LEU ALA GLN THR PHE VAL TYR GLY GLY LEU ARG SEQRES 4 A 58 ALA LYS ARG ASN ASN PHE LYS SER ALA GLU ASP ALA LEU SEQRES 5 A 58 ARG THR CYS GLY GLY ALA SEQRES 1 B 58 ARG PRO ASP PHE CYS LEU GLU PRO PRO TYR THR GLY PRO SEQRES 2 B 58 GLY LYS ALA ARG ILE ILE ARG TYR PHE TYR ASN ALA LYS SEQRES 3 B 58 ALA GLY LEU ALA GLN THR PHE VAL TYR GLY GLY LEU ARG SEQRES 4 B 58 ALA LYS ARG ASN ASN PHE LYS SER ALA GLU ASP ALA LEU SEQRES 5 B 58 ARG THR CYS GLY GLY ALA HET SO4 A 101 5 HET SO4 A 102 5 HET SO4 A 103 5 HET SO4 A 104 5 HET SO4 B 101 5 HET SO4 B 102 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 6(O4 S 2-) FORMUL 9 HOH *349(H2 O) HELIX 1 AA1 PRO A 2 GLU A 7 5 6 HELIX 2 AA2 SER A 47 GLY A 56 1 10 HELIX 3 AA3 PRO B 2 GLU B 7 5 6 HELIX 4 AA4 SER B 47 GLY B 56 1 10 SHEET 1 AA1 2 ILE A 18 ASN A 24 0 SHEET 2 AA1 2 LEU A 29 TYR A 35 -1 O LEU A 29 N ASN A 24 SHEET 1 AA2 2 ILE B 18 ASN B 24 0 SHEET 2 AA2 2 LEU B 29 TYR B 35 -1 O TYR B 35 N ILE B 18 SSBOND 1 CYS A 5 CYS A 55 1555 1555 2.05 SSBOND 2 CYS B 5 CYS B 55 1555 1555 2.05 SITE 1 AC1 10 GLU A 7 LYS A 41 ARG A 42 HOH A 204 SITE 2 AC1 10 HOH A 226 HOH A 231 HOH A 245 HOH A 246 SITE 3 AC1 10 HOH A 261 HOH A 279 SITE 1 AC2 11 ASP A 3 PHE A 4 ARG A 42 HOH A 219 SITE 2 AC2 11 HOH A 229 HOH A 237 HOH A 239 HOH A 253 SITE 3 AC2 11 HOH A 264 LYS B 15 HOH B 208 SITE 1 AC3 12 TYR A 10 ARG A 39 HOH A 201 HOH A 203 SITE 2 AC3 12 HOH A 266 HOH A 296 ARG B 20 TYR B 35 SITE 3 AC3 12 GLY B 37 ALA B 40 HOH B 237 HOH B 275 SITE 1 AC4 12 ARG A 20 TYR A 35 GLY A 37 ALA A 40 SITE 2 AC4 12 HOH A 214 HOH A 224 HOH A 230 HOH A 288 SITE 3 AC4 12 HOH A 290 ARG B 39 HOH B 201 HOH B 318 SITE 1 AC5 7 LYS B 41 ARG B 42 HOH B 218 HOH B 224 SITE 2 AC5 7 HOH B 235 HOH B 239 HOH B 251 SITE 1 AC6 10 LYS A 15 HOH A 205 HOH A 276 ASP B 3 SITE 2 AC6 10 PHE B 4 ARG B 42 HOH B 211 HOH B 215 SITE 3 AC6 10 HOH B 223 HOH B 226 CRYST1 25.413 40.690 61.147 90.00 89.99 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.039350 0.000000 -0.000009 0.00000 SCALE2 0.000000 0.024576 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016354 0.00000