HEADER TRANSFERASE 09-JUL-17 5XYK TITLE STRUCTURE OF TRANSFERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE CYTOPLASMIC PROTEIN; COMPND 3 CHAIN: E; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM (STRAIN 4/74); SOURCE 3 ORGANISM_TAXID: 909946; SOURCE 4 STRAIN: 4/74; SOURCE 5 GENE: STM474_2223; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.B.PARK,Y.YOO,J.KIM,H.S.CHO REVDAT 2 22-NOV-23 5XYK 1 REMARK REVDAT 1 11-JUL-18 5XYK 0 JRNL AUTH J.B.PARK,Y.YOO,J.KIM,H.S.CHO JRNL TITL STRUCTURE OF TRANSFERASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.57 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.57 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 67.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 3 NUMBER OF REFLECTIONS : 9052 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.262 REMARK 3 R VALUE (WORKING SET) : 0.261 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 457 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.57 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 475 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 66.26 REMARK 3 BIN R VALUE (WORKING SET) : 0.3150 REMARK 3 BIN FREE R VALUE SET COUNT : 18 REMARK 3 BIN FREE R VALUE : 0.3400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2442 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.398 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.321 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.817 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.862 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.822 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2538 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2295 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3436 ; 1.653 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5352 ; 1.097 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 302 ; 7.850 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 128 ;41.036 ;24.844 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 440 ;17.962 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;15.609 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 366 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2805 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 506 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1214 ; 2.015 ; 3.147 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1213 ; 2.015 ; 3.147 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1514 ; 3.228 ; 4.712 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1515 ; 3.227 ; 4.713 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1324 ; 2.040 ; 3.299 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1325 ; 2.040 ; 3.299 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1923 ; 3.284 ; 4.877 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 10701 ; 6.591 ;58.960 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 10701 ; 6.591 ;58.958 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5XYK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1300004387. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9052 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.570 REMARK 200 RESOLUTION RANGE LOW (A) : 67.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 5H5Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM ACETATE 0.1M BIS-TRIS REMARK 280 PH5.5 25% PEG2250, EVAPORATION, RECRYSTALLIZATION, TEMPERATURE REMARK 280 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 134.16133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 67.08067 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 67.08067 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 134.16133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET E 1 REMARK 465 ALA E 2 REMARK 465 ARG E 3 REMARK 465 PHE E 4 REMARK 465 ASN E 5 REMARK 465 ALA E 6 REMARK 465 ALA E 7 REMARK 465 PHE E 8 REMARK 465 THR E 9 REMARK 465 ARG E 10 REMARK 465 ILE E 11 REMARK 465 LYS E 12 REMARK 465 ILE E 13 REMARK 465 MET E 14 REMARK 465 PHE E 15 REMARK 465 SER E 16 REMARK 465 ARG E 17 REMARK 465 ILE E 18 REMARK 465 ARG E 19 REMARK 465 GLY E 20 REMARK 465 LEU E 21 REMARK 465 ILE E 22 REMARK 465 SER E 23 REMARK 465 CYS E 24 REMARK 465 GLN E 25 REMARK 465 SER E 26 REMARK 465 ASN E 27 REMARK 465 THR E 28 REMARK 465 GLN E 29 REMARK 465 THR E 30 REMARK 465 ILE E 31 REMARK 465 ALA E 32 REMARK 465 PRO E 33 REMARK 465 THR E 34 REMARK 465 LEU E 35 REMARK 465 SER E 36 REMARK 465 PRO E 37 REMARK 465 PRO E 38 REMARK 465 SER E 39 REMARK 465 THR E 343 REMARK 465 ALA E 344 REMARK 465 SER E 345 REMARK 465 SER E 346 REMARK 465 TRP E 347 REMARK 465 ARG E 348 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER E 340 MN MN E 402 1.64 REMARK 500 OD2 ASP E 299 N ASN E 302 2.03 REMARK 500 O PRO E 87 OD1 ASN E 91 2.09 REMARK 500 OH TYR E 143 OE1 GLU E 281 2.09 REMARK 500 O LEU E 190 OG SER E 193 2.11 REMARK 500 NH2 ARG E 263 OD1 ASP E 326 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS E 57 -8.67 -55.26 REMARK 500 ASN E 76 68.01 -119.92 REMARK 500 PRO E 79 49.78 -69.87 REMARK 500 ASP E 109 133.09 -171.00 REMARK 500 ALA E 284 -38.17 -39.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU E 165 ARG E 166 -148.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN E 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP E 241 OD2 REMARK 620 2 ASN E 338 OD1 91.3 REMARK 620 3 UDP E 403 O2B 165.1 99.7 REMARK 620 4 UDP E 403 O2A 94.6 172.9 75.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ARG E 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN E 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UDP E 403 DBREF 5XYK E 1 348 UNP E8XCX6 E8XCX6_SALT4 1 348 SEQRES 1 E 348 MET ALA ARG PHE ASN ALA ALA PHE THR ARG ILE LYS ILE SEQRES 2 E 348 MET PHE SER ARG ILE ARG GLY LEU ILE SER CYS GLN SER SEQRES 3 E 348 ASN THR GLN THR ILE ALA PRO THR LEU SER PRO PRO SER SEQRES 4 E 348 SER GLY HIS VAL SER PHE ALA GLY ILE ASP TYR PRO LEU SEQRES 5 E 348 LEU PRO LEU ASN HIS GLN THR PRO LEU VAL PHE GLN TRP SEQRES 6 E 348 PHE GLU ARG ASN PRO ASP ARG PHE GLY GLN ASN GLU ILE SEQRES 7 E 348 PRO ILE ILE ASN THR GLN LYS ASN PRO TYR LEU ASN ASN SEQRES 8 E 348 ILE ILE ASN ALA ALA ILE ILE GLU LYS GLU ARG ILE ILE SEQRES 9 E 348 GLY ILE PHE VAL ASP GLY ASP PHE SER LYS GLY GLN ARG SEQRES 10 E 348 LYS ALA LEU GLY LYS LEU GLU GLN ASN TYR ARG ASN ILE SEQRES 11 E 348 LYS VAL ILE TYR ASN SER ASP LEU ASN TYR SER MET TYR SEQRES 12 E 348 ASP LYS LYS LEU THR THR ILE TYR LEU GLU ASN ILE THR SEQRES 13 E 348 LYS LEU GLU ALA GLN SER ALA SER GLU ARG ASP GLU VAL SEQRES 14 E 348 LEU LEU ASN GLY VAL LYS LYS SER LEU GLU ASP VAL LEU SEQRES 15 E 348 LYS ASN ASN PRO GLU GLU THR LEU ILE SER SER HIS ASN SEQRES 16 E 348 LYS ASP LYS GLY HIS LEU TRP PHE ASP PHE TYR ARG ASN SEQRES 17 E 348 LEU PHE LEU LEU LYS GLY SER ASP ALA PHE LEU GLU ALA SEQRES 18 E 348 GLY LYS PRO GLY CYS HIS HIS LEU GLN PRO GLY GLY GLY SEQRES 19 E 348 CYS ILE TYR LEU ASP ALA ASP MET LEU LEU THR ASP LYS SEQRES 20 E 348 LEU GLY THR LEU TYR LEU PRO ASP GLY ILE ALA ILE HIS SEQRES 21 E 348 VAL SER ARG LYS ASP ASN HIS VAL SER LEU GLU ASN GLY SEQRES 22 E 348 ILE ILE ALA VAL ASN ARG SER GLU HIS PRO ALA LEU ILE SEQRES 23 E 348 LYS GLY LEU GLU ILE MET HIS SER LYS PRO TYR GLY ASP SEQRES 24 E 348 PRO TYR ASN ASP TRP LEU SER LYS GLY LEU ARG HIS TYR SEQRES 25 E 348 PHE ASP GLY SER HIS ILE GLN ASP TYR ASP ALA PHE CYS SEQRES 26 E 348 ASP PHE ILE GLU PHE LYS HIS GLU ASN ILE ILE MET ASN SEQRES 27 E 348 THR SER SER LEU THR ALA SER SER TRP ARG HET ARG E 401 12 HET MN E 402 1 HET UDP E 403 25 HETNAM ARG ARGININE HETNAM MN MANGANESE (II) ION HETNAM UDP URIDINE-5'-DIPHOSPHATE FORMUL 2 ARG C6 H15 N4 O2 1+ FORMUL 3 MN MN 2+ FORMUL 4 UDP C9 H14 N2 O12 P2 HELIX 1 AA1 ASN E 69 PHE E 73 5 5 HELIX 2 AA2 PRO E 87 GLU E 99 1 13 HELIX 3 AA3 SER E 113 TYR E 127 1 15 HELIX 4 AA4 SER E 136 LEU E 138 5 3 HELIX 5 AA5 TYR E 140 ASP E 144 5 5 HELIX 6 AA6 LYS E 146 ALA E 160 1 15 HELIX 7 AA7 ASP E 167 ASN E 185 1 19 HELIX 8 AA8 THR E 189 HIS E 194 1 6 HELIX 9 AA9 ASN E 195 LYS E 198 5 4 HELIX 10 AB1 GLY E 199 GLY E 214 1 16 HELIX 11 AB2 SER E 215 GLY E 222 1 8 HELIX 12 AB3 HIS E 282 SER E 294 1 13 HELIX 13 AB4 LEU E 305 ASP E 314 1 10 HELIX 14 AB5 ASP E 320 ILE E 328 1 9 HELIX 15 AB6 ASN E 338 LEU E 342 5 5 SHEET 1 AA1 3 HIS E 42 PHE E 45 0 SHEET 2 AA1 3 ILE E 48 LEU E 55 -1 O ILE E 48 N PHE E 45 SHEET 3 AA1 3 LEU E 251 PRO E 254 -1 O LEU E 251 N LEU E 55 SHEET 1 AA2 6 ILE E 130 TYR E 134 0 SHEET 2 AA2 6 ILE E 104 ASP E 109 1 N ILE E 106 O LYS E 131 SHEET 3 AA2 6 LEU E 61 PHE E 66 1 N LEU E 61 O GLY E 105 SHEET 4 AA2 6 GLY E 233 LEU E 238 1 O LEU E 238 N VAL E 62 SHEET 5 AA2 6 VAL E 268 ARG E 279 -1 O ILE E 275 N TYR E 237 SHEET 6 AA2 6 ILE E 257 ARG E 263 -1 N HIS E 260 O GLU E 271 SHEET 1 AA3 2 LEU E 243 LEU E 244 0 SHEET 2 AA3 2 ILE E 335 ILE E 336 -1 O ILE E 336 N LEU E 243 LINK OD2 ASP E 241 MN MN E 402 1555 1555 2.36 LINK OD1 ASN E 338 MN MN E 402 1555 1555 2.37 LINK MN MN E 402 O2B UDP E 403 1555 1555 2.26 LINK MN MN E 402 O2A UDP E 403 1555 1555 1.96 CISPEP 1 LYS E 264 ASP E 265 0 -16.73 SITE 1 AC1 8 HIS E 260 GLU E 271 ASN E 272 GLY E 273 SITE 2 AC1 8 ASN E 338 SER E 340 SER E 341 UDP E 403 SITE 1 AC2 5 ASP E 239 ASP E 241 ASN E 338 SER E 340 SITE 2 AC2 5 UDP E 403 SITE 1 AC3 14 GLN E 64 TRP E 65 PHE E 66 TYR E 88 SITE 2 AC3 14 PHE E 203 ARG E 207 TYR E 237 ASP E 239 SITE 3 AC3 14 ALA E 240 ASP E 241 ASN E 338 SER E 340 SITE 4 AC3 14 ARG E 401 MN E 402 CRYST1 50.059 50.059 201.242 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019976 0.011533 0.000000 0.00000 SCALE2 0.000000 0.023067 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004969 0.00000