HEADER CELL CYCLE 09-JUL-17 5XYL TITLE SOLUTION STRUCTURE OF SKP1 FROM HOMO SAPIENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: S-PHASE KINASE-ASSOCIATED PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CYCLIN-A/CDK2-ASSOCIATED PROTEIN P19,P19A,ORGAN OF CORTI COMPND 5 PROTEIN 2,OCP-2,ORGAN OF CORTI PROTEIN II,OCP-II,RNA POLYMERASE II COMPND 6 ELONGATION FACTOR-LIKE PROTEIN,SIII,TRANSCRIPTION ELONGATION FACTOR B COMPND 7 POLYPEPTIDE 1-LIKE,P19SKP1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SKP1, EMC19, OCP2, SKP1A, TCEB1L; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FBOX INTERACTING PROTEIN, CELL CYCLE EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR V.K.SHUKLA,N.N.KACHARIYA,A.BHATTACHARYA,S.C.DANTU,A.KUMAR REVDAT 2 14-JUN-23 5XYL 1 REMARK REVDAT 1 11-JUL-18 5XYL 0 JRNL AUTH V.K.SHUKLA,N.N.KACHARIA,A.BHATTACHARYA,S.C.DANTU,A.KUMAR JRNL TITL STRUCTURAL AND DYNAMICS INSIGHT OF THE RECOGNITION OF FBOX JRNL TITL 2 PROTEIN BY SKP1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5XYL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1300004388. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 20 MM SODIUM PHOSPHATE, 100 MM REMARK 210 SODIUM CHLORIDE, 90% H2O/10% D2O; REMARK 210 20 MM SODIUM PHOSPHATE, 100 MM REMARK 210 SODIUM CHLORIDE, 90% H2O/10% D2O; REMARK 210 20 MM SODIUM PHOSPHATE, 100 MM REMARK 210 SODIUM CHLORIDE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HN(CA)CO; 3D HN(COCA)CB; 3D REMARK 210 HNCACB; 3D HCCCONH; 3D CCCONH; REMARK 210 3D 1H-15N TOCSY; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY ALIPHATIC; 2D REMARK 210 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, CARA, TOPSPIN REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE2 HIS A 65 OD1 ASP A 89 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 2 -165.87 -76.79 REMARK 500 1 MET A 36 -43.62 67.07 REMARK 500 1 ASP A 37 82.01 62.09 REMARK 500 1 ASP A 41 32.48 -96.01 REMARK 500 1 PRO A 48 26.36 -77.32 REMARK 500 1 GLU A 73 -48.26 -158.81 REMARK 500 1 LYS A 80 -71.30 -81.74 REMARK 500 1 ARG A 81 84.73 -153.24 REMARK 500 1 THR A 82 85.39 60.43 REMARK 500 1 ASP A 83 -39.63 -132.94 REMARK 500 1 ILE A 127 -82.73 -83.20 REMARK 500 1 LYS A 128 17.06 -156.81 REMARK 500 1 LYS A 130 -147.08 -103.72 REMARK 500 1 PRO A 132 24.06 -79.85 REMARK 500 1 ASN A 140 36.49 73.27 REMARK 500 1 ILE A 141 -83.49 70.43 REMARK 500 1 LYS A 142 111.93 -179.29 REMARK 500 1 ASP A 144 37.59 -151.53 REMARK 500 1 GLU A 148 -80.47 -83.67 REMARK 500 1 GLU A 149 -42.56 65.72 REMARK 500 1 ARG A 154 -55.18 -163.65 REMARK 500 1 LYS A 155 -158.67 58.49 REMARK 500 1 GLU A 162 -163.87 66.71 REMARK 500 2 MET A 36 -48.54 -168.87 REMARK 500 2 ASP A 37 94.43 67.17 REMARK 500 2 GLU A 39 -30.66 -130.36 REMARK 500 2 ASP A 42 -150.05 54.34 REMARK 500 2 PRO A 71 119.61 -38.81 REMARK 500 2 GLU A 73 -67.53 -156.71 REMARK 500 2 ASP A 75 66.24 69.08 REMARK 500 2 ASN A 77 -161.95 174.94 REMARK 500 2 GLU A 79 160.11 76.56 REMARK 500 2 THR A 82 92.07 -64.94 REMARK 500 2 ASP A 83 -60.24 -130.05 REMARK 500 2 LYS A 128 -28.91 -172.21 REMARK 500 2 LYS A 130 -78.99 -117.27 REMARK 500 2 ILE A 141 -60.27 77.84 REMARK 500 2 THR A 146 -6.92 -172.91 REMARK 500 2 GLU A 149 154.26 71.45 REMARK 500 2 GLN A 152 155.58 69.47 REMARK 500 2 TRP A 159 -80.40 64.27 REMARK 500 2 CYS A 160 -70.41 -163.17 REMARK 500 2 GLU A 161 92.49 -168.95 REMARK 500 3 PRO A 2 98.88 -61.10 REMARK 500 3 MET A 36 -34.35 69.82 REMARK 500 3 ASP A 37 78.01 37.26 REMARK 500 3 ASP A 42 -163.45 66.45 REMARK 500 3 PRO A 48 43.34 -76.03 REMARK 500 3 ASN A 49 -50.27 -122.66 REMARK 500 3 PRO A 72 -74.98 -63.37 REMARK 500 REMARK 500 THIS ENTRY HAS 201 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 26765 RELATED DB: BMRB DBREF 5XYL A 1 163 UNP P63208 SKP1_HUMAN 1 163 SEQRES 1 A 163 MET PRO SER ILE LYS LEU GLN SER SER ASP GLY GLU ILE SEQRES 2 A 163 PHE GLU VAL ASP VAL GLU ILE ALA LYS GLN SER VAL THR SEQRES 3 A 163 ILE LYS THR MET LEU GLU ASP LEU GLY MET ASP ASP GLU SEQRES 4 A 163 GLY ASP ASP ASP PRO VAL PRO LEU PRO ASN VAL ASN ALA SEQRES 5 A 163 ALA ILE LEU LYS LYS VAL ILE GLN TRP CYS THR HIS HIS SEQRES 6 A 163 LYS ASP ASP PRO PRO PRO PRO GLU ASP ASP GLU ASN LYS SEQRES 7 A 163 GLU LYS ARG THR ASP ASP ILE PRO VAL TRP ASP GLN GLU SEQRES 8 A 163 PHE LEU LYS VAL ASP GLN GLY THR LEU PHE GLU LEU ILE SEQRES 9 A 163 LEU ALA ALA ASN TYR LEU ASP ILE LYS GLY LEU LEU ASP SEQRES 10 A 163 VAL THR CYS LYS THR VAL ALA ASN MET ILE LYS GLY LYS SEQRES 11 A 163 THR PRO GLU GLU ILE ARG LYS THR PHE ASN ILE LYS ASN SEQRES 12 A 163 ASP PHE THR GLU GLU GLU GLU ALA GLN VAL ARG LYS GLU SEQRES 13 A 163 ASN GLN TRP CYS GLU GLU LYS HELIX 1 AA1 VAL A 18 LYS A 22 1 5 HELIX 2 AA2 SER A 24 LEU A 34 1 11 HELIX 3 AA3 ASN A 51 LYS A 66 1 16 HELIX 4 AA4 PRO A 86 LEU A 93 1 8 HELIX 5 AA5 ASP A 96 ASP A 111 1 16 HELIX 6 AA6 ILE A 112 MET A 126 1 15 HELIX 7 AA7 GLU A 133 ASN A 140 5 8 SHEET 1 AA1 2 SER A 3 GLN A 7 0 SHEET 2 AA1 2 ILE A 13 ASP A 17 -1 O PHE A 14 N LEU A 6 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1