HEADER HYDROLASE 10-JUL-17 5XYO TITLE STRUCTURE OF 6-AMINOHEXANOATE-OLIGOMER HYDROLASE FROM ARTHROBACTER SP. TITLE 2 KI72., D122G MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDO-TYPE 6-AMINOHEXANOATE OLIGOMER HYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FLAVOBACTERIUM SP. KI723T1; SOURCE 3 ORGANISM_TAXID: 408956; SOURCE 4 GENE: NYLC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NYLON OLIGOMER, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.NEGORO,N.SHIBATA,K.NAGAI,Y.HIGUCHI REVDAT 2 22-NOV-23 5XYO 1 REMARK REVDAT 1 21-NOV-18 5XYO 0 JRNL AUTH S.NEGORO,N.SHIBATA,Y.H.LEE,I.TAKEHARA,R.KINUGASA,K.NAGAI, JRNL AUTH 2 Y.TANAKA,D.I.KATO,M.TAKEO,Y.GOTO,Y.HIGUCHI JRNL TITL STRUCTURAL BASIS OF THE CORRECT SUBUNIT ASSEMBLY, JRNL TITL 2 AGGREGATION, AND INTRACELLULAR DEGRADATION OF NYLON JRNL TITL 3 HYDROLASE JRNL REF SCI REP V. 8 9725 2018 JRNL REFN ESSN 2045-2322 JRNL PMID 29950566 JRNL DOI 10.1038/S41598-018-27860-W REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 72.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 41403 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2200 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2542 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.2640 REMARK 3 BIN FREE R VALUE SET COUNT : 122 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4858 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 317 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.20000 REMARK 3 B22 (A**2) : -1.66000 REMARK 3 B33 (A**2) : -1.54000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.180 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.165 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.122 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.057 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5019 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6834 ; 1.210 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 668 ; 7.856 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 215 ;35.630 ;22.651 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 715 ;15.176 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 47 ;16.514 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 758 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3932 ; 0.015 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3284 ; 2.285 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5230 ; 3.258 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1735 ; 5.251 ; 4.500 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1598 ; 6.960 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 15 A 355 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1308 ; 0.22 ; 0.50 REMARK 3 LOOSE POSITIONAL 1 A (A): 1077 ; 0.53 ; 5.00 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1308 ; 2.08 ; 2.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 1077 ; 3.00 ; 10.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 2 B 19 B 355 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 355 REMARK 3 ORIGIN FOR THE GROUP (A): -1.1026 -30.5393 16.1286 REMARK 3 T TENSOR REMARK 3 T11: 0.0097 T22: 0.0238 REMARK 3 T33: 0.0248 T12: 0.0044 REMARK 3 T13: 0.0016 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.2125 L22: 0.2150 REMARK 3 L33: 0.3183 L12: -0.0820 REMARK 3 L13: -0.0143 L23: 0.0869 REMARK 3 S TENSOR REMARK 3 S11: -0.0028 S12: -0.0035 S13: -0.0022 REMARK 3 S21: -0.0352 S22: 0.0009 S23: -0.0024 REMARK 3 S31: -0.0366 S32: 0.0007 S33: 0.0019 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 355 REMARK 3 ORIGIN FOR THE GROUP (A): -7.5507 -63.2541 18.0947 REMARK 3 T TENSOR REMARK 3 T11: 0.0128 T22: 0.0254 REMARK 3 T33: 0.0226 T12: -0.0030 REMARK 3 T13: -0.0099 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 0.1467 L22: 0.2803 REMARK 3 L33: 0.2129 L12: -0.0539 REMARK 3 L13: -0.0128 L23: -0.0455 REMARK 3 S TENSOR REMARK 3 S11: 0.0002 S12: 0.0061 S13: 0.0027 REMARK 3 S21: -0.0444 S22: 0.0184 S23: 0.0266 REMARK 3 S31: 0.0380 S32: -0.0220 S33: -0.0186 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5XYO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1300004392. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS VII REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43634 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 2.790 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.05 REMARK 200 R MERGE FOR SHELL (I) : 0.19000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5XYG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2-2.2 M AMMONIUM SULPHATE, 0.2 M REMARK 280 NACL, 0.1 M HEPES BUFFER PH 7.5-8.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.17650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.17650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.24250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 72.22950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.24250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 72.22950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 64.17650 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.24250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 72.22950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 64.17650 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.24250 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 72.22950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -169.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 64.17650 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 THR A 3 REMARK 465 THR A 4 REMARK 465 PRO A 5 REMARK 465 VAL A 6 REMARK 465 HIS A 7 REMARK 465 ALA A 8 REMARK 465 LEU A 9 REMARK 465 THR A 10 REMARK 465 ASP A 11 REMARK 465 ILE A 12 REMARK 465 ASP A 13 REMARK 465 GLY A 14 REMARK 465 VAL A 29 REMARK 465 PHE A 30 REMARK 465 PRO A 260 REMARK 465 VAL A 261 REMARK 465 THR A 262 REMARK 465 GLU A 263 REMARK 465 ALA A 264 REMARK 465 GLY A 265 REMARK 465 ASN A 266 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 THR B 3 REMARK 465 THR B 4 REMARK 465 PRO B 5 REMARK 465 VAL B 6 REMARK 465 HIS B 7 REMARK 465 ALA B 8 REMARK 465 LEU B 9 REMARK 465 THR B 10 REMARK 465 ASP B 11 REMARK 465 ILE B 12 REMARK 465 ASP B 13 REMARK 465 GLY B 14 REMARK 465 GLY B 15 REMARK 465 ILE B 16 REMARK 465 ALA B 17 REMARK 465 VAL B 18 REMARK 465 VAL B 261 REMARK 465 THR B 262 REMARK 465 GLU B 263 REMARK 465 ALA B 264 REMARK 465 GLY B 265 REMARK 465 ASN B 266 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 126 O REMARK 470 GLU B 126 O REMARK 470 PRO B 260 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 206 O GLY B 208 1.96 REMARK 500 O HOH B 592 O HOH B 645 1.98 REMARK 500 NH1 ARG A 277 OD1 ASP A 319 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 55 74.82 -152.90 REMARK 500 ALA A 110 -147.48 45.31 REMARK 500 ALA A 179 143.53 -170.11 REMARK 500 THR A 198 -100.93 -100.33 REMARK 500 LEU A 331 55.32 -114.98 REMARK 500 VAL B 29 65.26 -105.16 REMARK 500 ALA B 91 46.60 -143.23 REMARK 500 ALA B 110 -149.98 49.83 REMARK 500 ARG B 178 90.20 -68.17 REMARK 500 THR B 198 -98.64 -100.07 REMARK 500 ARG B 233 119.88 -165.72 REMARK 500 LEU B 331 67.69 -110.27 REMARK 500 ASN B 334 -172.61 -171.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 401 REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHORS STATE THAT THE LONG GAP BETWEEN THE RESIDUES IS DUE TO THE REMARK 999 POST-TRANSLATIONAL AUTO-CLEAVAGE OF THE NASCENT POLYPEPTIDE BETWEEN REMARK 999 ASN266 AND THR267. DBREF 5XYO A 1 355 UNP Q57326 Q57326_9FLAO 1 355 DBREF 5XYO B 1 355 UNP Q57326 Q57326_9FLAO 1 355 SEQADV 5XYO GLY A 122 UNP Q57326 ASP 122 ENGINEERED MUTATION SEQADV 5XYO GLY B 122 UNP Q57326 ASP 122 ENGINEERED MUTATION SEQRES 1 A 355 MET ASN THR THR PRO VAL HIS ALA LEU THR ASP ILE ASP SEQRES 2 A 355 GLY GLY ILE ALA VAL ASP PRO ALA PRO ARG LEU ALA GLY SEQRES 3 A 355 PRO PRO VAL PHE GLY GLY PRO GLY ASN ASP ALA PHE ASP SEQRES 4 A 355 LEU ALA PRO VAL ARG SER THR GLY ARG GLU MET LEU ARG SEQRES 5 A 355 PHE ASP PHE PRO GLY VAL SER ILE GLY ALA ALA HIS TYR SEQRES 6 A 355 GLU GLU GLY PRO THR GLY ALA THR VAL ILE HIS ILE PRO SEQRES 7 A 355 ALA GLY ALA ARG THR ALA VAL ASP ALA ARG GLY GLY ALA SEQRES 8 A 355 VAL GLY LEU SER GLY GLY TYR ASP PHE ASN HIS ALA ILE SEQRES 9 A 355 CYS LEU ALA GLY GLY ALA GLY TYR GLY LEU GLU ALA GLY SEQRES 10 A 355 ALA GLY VAL SER GLY ALA LEU LEU GLU ARG LEU GLU HIS SEQRES 11 A 355 ARG THR GLY PHE ALA GLU LEU GLN LEU VAL SER SER ALA SEQRES 12 A 355 VAL ILE TYR ASP PHE SER ALA ARG SER THR ALA VAL TYR SEQRES 13 A 355 PRO ASP LYS ALA LEU GLY ARG ALA ALA LEU GLU PHE ALA SEQRES 14 A 355 VAL PRO GLY GLU PHE PRO GLN GLY ARG ALA GLY ALA GLY SEQRES 15 A 355 MET SER ALA SER ALA GLY LYS VAL ASP TRP ASP ARG THR SEQRES 16 A 355 GLU ILE THR GLY GLN GLY ALA ALA PHE ARG ARG LEU GLY SEQRES 17 A 355 ASP VAL ARG ILE LEU ALA VAL VAL VAL PRO ASN PRO VAL SEQRES 18 A 355 GLY VAL ILE VAL ASP ARG ALA GLY THR VAL VAL ARG GLY SEQRES 19 A 355 ASN TYR ASP ALA GLN THR GLY VAL ARG ARG HIS PRO VAL SEQRES 20 A 355 PHE ASP TYR GLN GLU ALA PHE ALA GLU GLN VAL PRO PRO SEQRES 21 A 355 VAL THR GLU ALA GLY ASN THR THR ILE SER ALA ILE VAL SEQRES 22 A 355 THR ASN VAL ARG MET SER PRO VAL GLU LEU ASN GLN PHE SEQRES 23 A 355 ALA LYS GLN VAL HIS SER SER MET HIS ARG GLY ILE GLN SEQRES 24 A 355 PRO PHE HIS THR ASP MET ASP GLY ASP THR LEU PHE ALA SEQRES 25 A 355 VAL THR THR ASP GLU ILE ASP LEU PRO THR THR PRO GLY SEQRES 26 A 355 SER SER ARG GLY ARG LEU SER VAL ASN ALA THR ALA LEU SEQRES 27 A 355 GLY ALA ILE ALA SER GLU VAL MET TRP ASP ALA VAL LEU SEQRES 28 A 355 GLU ALA GLY LYS SEQRES 1 B 355 MET ASN THR THR PRO VAL HIS ALA LEU THR ASP ILE ASP SEQRES 2 B 355 GLY GLY ILE ALA VAL ASP PRO ALA PRO ARG LEU ALA GLY SEQRES 3 B 355 PRO PRO VAL PHE GLY GLY PRO GLY ASN ASP ALA PHE ASP SEQRES 4 B 355 LEU ALA PRO VAL ARG SER THR GLY ARG GLU MET LEU ARG SEQRES 5 B 355 PHE ASP PHE PRO GLY VAL SER ILE GLY ALA ALA HIS TYR SEQRES 6 B 355 GLU GLU GLY PRO THR GLY ALA THR VAL ILE HIS ILE PRO SEQRES 7 B 355 ALA GLY ALA ARG THR ALA VAL ASP ALA ARG GLY GLY ALA SEQRES 8 B 355 VAL GLY LEU SER GLY GLY TYR ASP PHE ASN HIS ALA ILE SEQRES 9 B 355 CYS LEU ALA GLY GLY ALA GLY TYR GLY LEU GLU ALA GLY SEQRES 10 B 355 ALA GLY VAL SER GLY ALA LEU LEU GLU ARG LEU GLU HIS SEQRES 11 B 355 ARG THR GLY PHE ALA GLU LEU GLN LEU VAL SER SER ALA SEQRES 12 B 355 VAL ILE TYR ASP PHE SER ALA ARG SER THR ALA VAL TYR SEQRES 13 B 355 PRO ASP LYS ALA LEU GLY ARG ALA ALA LEU GLU PHE ALA SEQRES 14 B 355 VAL PRO GLY GLU PHE PRO GLN GLY ARG ALA GLY ALA GLY SEQRES 15 B 355 MET SER ALA SER ALA GLY LYS VAL ASP TRP ASP ARG THR SEQRES 16 B 355 GLU ILE THR GLY GLN GLY ALA ALA PHE ARG ARG LEU GLY SEQRES 17 B 355 ASP VAL ARG ILE LEU ALA VAL VAL VAL PRO ASN PRO VAL SEQRES 18 B 355 GLY VAL ILE VAL ASP ARG ALA GLY THR VAL VAL ARG GLY SEQRES 19 B 355 ASN TYR ASP ALA GLN THR GLY VAL ARG ARG HIS PRO VAL SEQRES 20 B 355 PHE ASP TYR GLN GLU ALA PHE ALA GLU GLN VAL PRO PRO SEQRES 21 B 355 VAL THR GLU ALA GLY ASN THR THR ILE SER ALA ILE VAL SEQRES 22 B 355 THR ASN VAL ARG MET SER PRO VAL GLU LEU ASN GLN PHE SEQRES 23 B 355 ALA LYS GLN VAL HIS SER SER MET HIS ARG GLY ILE GLN SEQRES 24 B 355 PRO PHE HIS THR ASP MET ASP GLY ASP THR LEU PHE ALA SEQRES 25 B 355 VAL THR THR ASP GLU ILE ASP LEU PRO THR THR PRO GLY SEQRES 26 B 355 SER SER ARG GLY ARG LEU SER VAL ASN ALA THR ALA LEU SEQRES 27 B 355 GLY ALA ILE ALA SER GLU VAL MET TRP ASP ALA VAL LEU SEQRES 28 B 355 GLU ALA GLY LYS HET SO4 A 401 5 HET CL A 402 1 HET GOL A 403 6 HET SO4 B 401 5 HET CL B 402 1 HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 2(O4 S 2-) FORMUL 4 CL 2(CL 1-) FORMUL 5 GOL C3 H8 O3 FORMUL 8 HOH *317(H2 O) HELIX 1 AA1 GLY A 34 PHE A 38 5 5 HELIX 2 AA2 GLY A 109 GLY A 113 5 5 HELIX 3 AA3 LEU A 114 GLU A 126 1 13 HELIX 4 AA4 GLY A 133 LEU A 137 5 5 HELIX 5 AA5 ASP A 158 PHE A 168 1 11 HELIX 6 AA6 ALA A 179 SER A 184 5 6 HELIX 7 AA7 ASP A 191 THR A 195 5 5 HELIX 8 AA8 HIS A 245 VAL A 258 1 14 HELIX 9 AA9 SER A 279 MET A 294 1 16 HELIX 10 AB1 ASN A 334 LYS A 355 1 22 HELIX 11 AB2 GLY B 34 PHE B 38 5 5 HELIX 12 AB3 GLY B 109 GLY B 113 5 5 HELIX 13 AB4 LEU B 114 GLU B 126 1 13 HELIX 14 AB5 GLY B 133 LEU B 137 5 5 HELIX 15 AB6 ASP B 158 PHE B 168 1 11 HELIX 16 AB7 ALA B 179 MET B 183 5 5 HELIX 17 AB8 ASP B 191 THR B 195 5 5 HELIX 18 AB9 HIS B 245 VAL B 258 1 14 HELIX 19 AC1 SER B 279 MET B 294 1 16 HELIX 20 AC2 ASN B 334 LYS B 355 1 22 SHEET 1 AA1 4 VAL A 43 ARG A 44 0 SHEET 2 AA1 4 SER A 59 TYR A 65 -1 O HIS A 64 N VAL A 43 SHEET 3 AA1 4 THR A 70 ALA A 87 -1 O VAL A 74 N GLY A 61 SHEET 4 AA1 4 VAL A 170 PRO A 171 0 SHEET 1 AA2 9 LEU A 94 SER A 95 0 SHEET 2 AA2 9 VAL A 140 VAL A 144 -1 O SER A 142 N SER A 95 SHEET 3 AA2 9 PHE A 100 ALA A 107 1 N CYS A 105 O SER A 141 SHEET 4 AA2 9 THR A 70 ALA A 87 -1 N ILE A 77 O HIS A 102 SHEET 5 AA2 9 SER A 59 TYR A 65 -1 N GLY A 61 O VAL A 74 SHEET 6 AA2 9 THR A 309 ILE A 318 0 SHEET 7 AA2 9 THR A 268 VAL A 276 1 N ILE A 272 O VAL A 313 SHEET 8 AA2 9 VAL A 210 PRO A 218 -1 N VAL A 215 O ALA A 271 SHEET 9 AA2 9 GLY A 201 LEU A 207 -1 N ALA A 203 O ALA A 214 SHEET 1 AA3 2 GLU A 49 ARG A 52 0 SHEET 2 AA3 2 GLU A 173 GLN A 176 -1 O GLN A 176 N GLU A 49 SHEET 1 AA4 2 SER A 186 ALA A 187 0 SHEET 2 AA4 2 GLU A 196 ILE A 197 -1 O GLU A 196 N ALA A 187 SHEET 1 AA5 3 VAL A 231 ARG A 233 0 SHEET 2 AA5 3 VAL A 223 VAL A 225 -1 N ILE A 224 O VAL A 232 SHEET 3 AA5 3 ILE A 298 GLN A 299 -1 O GLN A 299 N VAL A 223 SHEET 1 AA6 4 VAL B 43 ARG B 44 0 SHEET 2 AA6 4 SER B 59 TYR B 65 -1 O HIS B 64 N VAL B 43 SHEET 3 AA6 4 THR B 70 ALA B 87 -1 O VAL B 74 N GLY B 61 SHEET 4 AA6 4 VAL B 170 PRO B 171 0 SHEET 1 AA7 9 LEU B 94 SER B 95 0 SHEET 2 AA7 9 VAL B 140 VAL B 144 -1 O SER B 142 N SER B 95 SHEET 3 AA7 9 PHE B 100 ALA B 107 1 N CYS B 105 O SER B 141 SHEET 4 AA7 9 THR B 70 ALA B 87 -1 N ILE B 77 O HIS B 102 SHEET 5 AA7 9 SER B 59 TYR B 65 -1 N GLY B 61 O VAL B 74 SHEET 6 AA7 9 THR B 309 ILE B 318 0 SHEET 7 AA7 9 THR B 268 VAL B 276 1 N ILE B 272 O PHE B 311 SHEET 8 AA7 9 VAL B 210 PRO B 218 -1 N LEU B 213 O VAL B 273 SHEET 9 AA7 9 GLY B 201 LEU B 207 -1 N ALA B 203 O ALA B 214 SHEET 1 AA8 2 GLU B 49 ARG B 52 0 SHEET 2 AA8 2 GLU B 173 GLN B 176 -1 O PHE B 174 N LEU B 51 SHEET 1 AA9 2 SER B 186 ALA B 187 0 SHEET 2 AA9 2 GLU B 196 ILE B 197 -1 O GLU B 196 N ALA B 187 SHEET 1 AB1 3 VAL B 231 ARG B 233 0 SHEET 2 AB1 3 VAL B 223 VAL B 225 -1 N ILE B 224 O ARG B 233 SHEET 3 AB1 3 ILE B 298 GLN B 299 -1 O GLN B 299 N VAL B 223 CISPEP 1 GLY A 68 PRO A 69 0 -11.48 CISPEP 2 VAL A 258 PRO A 259 0 16.44 CISPEP 3 GLN A 299 PRO A 300 0 -13.60 CISPEP 4 GLY B 68 PRO B 69 0 -8.95 CISPEP 5 VAL B 258 PRO B 259 0 6.83 CISPEP 6 GLN B 299 PRO B 300 0 -11.14 SITE 1 AC1 4 ARG A 82 ARG A 277 SER A 279 PRO A 280 SITE 1 AC2 2 ARG A 205 LEU A 207 SITE 1 AC3 1 HOH A 515 SITE 1 AC4 2 ARG B 82 SER B 279 CRYST1 70.485 144.459 128.353 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014187 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006922 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007791 0.00000