HEADER IMMUNE SYSTEM 11-JUL-17 5XZ3 TITLE THE X-RAY STRUCTURE OF APIS MELLIFERA PGRP-SA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDOGLYCAN-RECOGNITION PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: APIS MELLIFERA; SOURCE 3 ORGANISM_COMMON: HONEYBEE; SOURCE 4 ORGANISM_TAXID: 7460; SOURCE 5 GENE: PGRP-S3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS APIS MELLIFERA, PGRP-SA, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR Y.J.LIU,J.X.HUANG,X.M.ZHAO,J.D.AN REVDAT 3 22-NOV-23 5XZ3 1 REMARK REVDAT 2 30-JAN-19 5XZ3 1 JRNL REVDAT 1 18-JUL-18 5XZ3 0 JRNL AUTH Y.LIU,X.ZHAO,M.NAEEM,J.AN JRNL TITL CRYSTAL STRUCTURE OF PEPTIDOGLYCAN RECOGNITION PROTEIN SA IN JRNL TITL 2 APIS MELLIFERA (HYMENOPTERA: APIDAE). JRNL REF PROTEIN SCI. V. 27 893 2018 JRNL REFN ESSN 1469-896X JRNL PMID 29396863 JRNL DOI 10.1002/PRO.3383 REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.9 REMARK 3 NUMBER OF REFLECTIONS : 48086 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2476 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.86 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2067 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 53.33 REMARK 3 BIN R VALUE (WORKING SET) : 0.2120 REMARK 3 BIN FREE R VALUE SET COUNT : 117 REMARK 3 BIN FREE R VALUE : 0.2220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5361 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 244 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.76000 REMARK 3 B22 (A**2) : 0.08000 REMARK 3 B33 (A**2) : -1.87000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.31000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.173 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.144 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.097 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.516 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5513 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7477 ; 1.357 ; 1.925 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 667 ; 6.294 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 258 ;42.921 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 947 ;15.656 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;13.041 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 803 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4167 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2680 ; 0.931 ; 2.713 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3343 ; 1.473 ; 4.060 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2833 ; 1.333 ; 2.895 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 8458 ; 3.803 ;37.340 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 173 REMARK 3 ORIGIN FOR THE GROUP (A): 25.6580 1.0442 4.2128 REMARK 3 T TENSOR REMARK 3 T11: 0.0160 T22: 0.0370 REMARK 3 T33: 0.0494 T12: -0.0030 REMARK 3 T13: -0.0160 T23: -0.0067 REMARK 3 L TENSOR REMARK 3 L11: 1.0486 L22: 0.5545 REMARK 3 L33: 1.3620 L12: -0.3549 REMARK 3 L13: -0.3090 L23: 0.4266 REMARK 3 S TENSOR REMARK 3 S11: -0.0136 S12: 0.1059 S13: 0.0880 REMARK 3 S21: -0.0052 S22: 0.0291 S23: -0.0847 REMARK 3 S31: -0.0691 S32: -0.0758 S33: -0.0155 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 6 B 173 REMARK 3 ORIGIN FOR THE GROUP (A): 35.2401 15.5269 30.7114 REMARK 3 T TENSOR REMARK 3 T11: 0.0313 T22: 0.0123 REMARK 3 T33: 0.0536 T12: -0.0111 REMARK 3 T13: -0.0163 T23: -0.0072 REMARK 3 L TENSOR REMARK 3 L11: 0.1939 L22: 0.6290 REMARK 3 L33: 1.1765 L12: -0.1490 REMARK 3 L13: -0.1013 L23: -0.0018 REMARK 3 S TENSOR REMARK 3 S11: 0.0659 S12: -0.0171 S13: -0.0381 REMARK 3 S21: 0.0054 S22: -0.0015 S23: 0.0392 REMARK 3 S31: -0.0072 S32: -0.0153 S33: -0.0644 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 9 C 173 REMARK 3 ORIGIN FOR THE GROUP (A): 2.7108 -2.4188 39.9560 REMARK 3 T TENSOR REMARK 3 T11: 0.0792 T22: 0.1266 REMARK 3 T33: 0.0317 T12: 0.0311 REMARK 3 T13: 0.0279 T23: 0.0290 REMARK 3 L TENSOR REMARK 3 L11: 1.5744 L22: 1.6184 REMARK 3 L33: 1.2939 L12: -1.1893 REMARK 3 L13: 0.1550 L23: -0.7986 REMARK 3 S TENSOR REMARK 3 S11: -0.2534 S12: -0.1043 S13: -0.0904 REMARK 3 S21: 0.2049 S22: 0.3301 S23: 0.1197 REMARK 3 S31: -0.1254 S32: -0.1561 S33: -0.0767 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 9 D 173 REMARK 3 ORIGIN FOR THE GROUP (A): 9.1302 -23.4189 5.8434 REMARK 3 T TENSOR REMARK 3 T11: 0.0307 T22: 0.1134 REMARK 3 T33: 0.0350 T12: -0.0488 REMARK 3 T13: -0.0112 T23: -0.0092 REMARK 3 L TENSOR REMARK 3 L11: 0.5667 L22: 0.5114 REMARK 3 L33: 1.7454 L12: 0.4769 REMARK 3 L13: 0.2867 L23: 0.1981 REMARK 3 S TENSOR REMARK 3 S11: -0.0344 S12: 0.0166 S13: -0.0040 REMARK 3 S21: -0.0051 S22: 0.0215 S23: -0.0651 REMARK 3 S31: 0.1454 S32: -0.2710 S33: 0.0130 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5XZ3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1300003923. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50577 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1S2J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS HYDROCHLORIDE; 2.0 M REMARK 280 AMMONIUM SULFATE; PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.30350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 PHE B 3 REMARK 465 ASP B 4 REMARK 465 GLU B 5 REMARK 465 MET C 1 REMARK 465 GLU C 2 REMARK 465 PHE C 3 REMARK 465 ASP C 4 REMARK 465 GLU C 5 REMARK 465 ASN C 6 REMARK 465 CYS C 7 REMARK 465 SER C 8 REMARK 465 MET D 1 REMARK 465 GLU D 2 REMARK 465 PHE D 3 REMARK 465 ASP D 4 REMARK 465 GLU D 5 REMARK 465 ASN D 6 REMARK 465 CYS D 7 REMARK 465 SER D 8 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 7 51.04 -111.54 REMARK 500 HIS A 94 -32.28 -137.12 REMARK 500 CYS B 7 65.31 -115.61 REMARK 500 HIS C 94 -33.90 -139.77 REMARK 500 LYS D 22 69.10 -110.47 REMARK 500 ASN D 25 139.70 -171.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 201 DBREF1 5XZ3 A 4 173 UNP A0A088AJM6_APIME DBREF2 5XZ3 A A0A088AJM6 20 189 DBREF1 5XZ3 B 4 173 UNP A0A088AJM6_APIME DBREF2 5XZ3 B A0A088AJM6 20 189 DBREF1 5XZ3 C 4 173 UNP A0A088AJM6_APIME DBREF2 5XZ3 C A0A088AJM6 20 189 DBREF1 5XZ3 D 4 173 UNP A0A088AJM6_APIME DBREF2 5XZ3 D A0A088AJM6 20 189 SEQADV 5XZ3 MET A 1 UNP A0A088AJM EXPRESSION TAG SEQADV 5XZ3 GLU A 2 UNP A0A088AJM EXPRESSION TAG SEQADV 5XZ3 PHE A 3 UNP A0A088AJM EXPRESSION TAG SEQADV 5XZ3 MET B 1 UNP A0A088AJM EXPRESSION TAG SEQADV 5XZ3 GLU B 2 UNP A0A088AJM EXPRESSION TAG SEQADV 5XZ3 PHE B 3 UNP A0A088AJM EXPRESSION TAG SEQADV 5XZ3 MET C 1 UNP A0A088AJM EXPRESSION TAG SEQADV 5XZ3 GLU C 2 UNP A0A088AJM EXPRESSION TAG SEQADV 5XZ3 PHE C 3 UNP A0A088AJM EXPRESSION TAG SEQADV 5XZ3 MET D 1 UNP A0A088AJM EXPRESSION TAG SEQADV 5XZ3 GLU D 2 UNP A0A088AJM EXPRESSION TAG SEQADV 5XZ3 PHE D 3 UNP A0A088AJM EXPRESSION TAG SEQRES 1 A 173 MET GLU PHE ASP GLU ASN CYS SER GLU ILE ILE LYS ARG SEQRES 2 A 173 ASN GLU TRP THR ASN VAL GLN ALA LYS ASN ILE ASN TYR SEQRES 3 A 173 LEU ILE ILE PRO ILE PRO TYR VAL ILE ILE HIS HIS THR SEQRES 4 A 173 VAL SER LEU GLU CYS ASN SER LYS ASP THR CYS ILE SER SEQRES 5 A 173 ASN ILE GLU ASN ILE ARG SER TYR HIS MET ASP THR LEU SEQRES 6 A 173 ASN TRP HIS ASP ILE GLY TYR SER PHE LEU ILE GLY GLY SEQRES 7 A 173 ASP GLY ASN ILE TYR GLU GLY CYS GLY TRP ASN HIS GLU SEQRES 8 A 173 GLY ALA HIS THR TYR GLY TYR ASN LYS LYS SER ILE SER SEQRES 9 A 173 ILE ALA PHE ILE GLY ASN PHE GLN ASN LYS SER ALA SER SEQRES 10 A 173 ASN LYS MET LEU ASN ALA ALA HIS LYS LEU ILE LEU CYS SEQRES 11 A 173 GLY LYS SER LYS GLY ILE LEU ARG GLU ASP VAL ARG VAL SEQRES 12 A 173 ILE GLY GLY LYS GLN VAL ILE ALA THR LEU SER PRO GLY SEQRES 13 A 173 PHE GLU LEU TYR LYS GLN ILE GLN ASN TRP PRO GLU TRP SEQRES 14 A 173 VAL SER THR PRO SEQRES 1 B 173 MET GLU PHE ASP GLU ASN CYS SER GLU ILE ILE LYS ARG SEQRES 2 B 173 ASN GLU TRP THR ASN VAL GLN ALA LYS ASN ILE ASN TYR SEQRES 3 B 173 LEU ILE ILE PRO ILE PRO TYR VAL ILE ILE HIS HIS THR SEQRES 4 B 173 VAL SER LEU GLU CYS ASN SER LYS ASP THR CYS ILE SER SEQRES 5 B 173 ASN ILE GLU ASN ILE ARG SER TYR HIS MET ASP THR LEU SEQRES 6 B 173 ASN TRP HIS ASP ILE GLY TYR SER PHE LEU ILE GLY GLY SEQRES 7 B 173 ASP GLY ASN ILE TYR GLU GLY CYS GLY TRP ASN HIS GLU SEQRES 8 B 173 GLY ALA HIS THR TYR GLY TYR ASN LYS LYS SER ILE SER SEQRES 9 B 173 ILE ALA PHE ILE GLY ASN PHE GLN ASN LYS SER ALA SER SEQRES 10 B 173 ASN LYS MET LEU ASN ALA ALA HIS LYS LEU ILE LEU CYS SEQRES 11 B 173 GLY LYS SER LYS GLY ILE LEU ARG GLU ASP VAL ARG VAL SEQRES 12 B 173 ILE GLY GLY LYS GLN VAL ILE ALA THR LEU SER PRO GLY SEQRES 13 B 173 PHE GLU LEU TYR LYS GLN ILE GLN ASN TRP PRO GLU TRP SEQRES 14 B 173 VAL SER THR PRO SEQRES 1 C 173 MET GLU PHE ASP GLU ASN CYS SER GLU ILE ILE LYS ARG SEQRES 2 C 173 ASN GLU TRP THR ASN VAL GLN ALA LYS ASN ILE ASN TYR SEQRES 3 C 173 LEU ILE ILE PRO ILE PRO TYR VAL ILE ILE HIS HIS THR SEQRES 4 C 173 VAL SER LEU GLU CYS ASN SER LYS ASP THR CYS ILE SER SEQRES 5 C 173 ASN ILE GLU ASN ILE ARG SER TYR HIS MET ASP THR LEU SEQRES 6 C 173 ASN TRP HIS ASP ILE GLY TYR SER PHE LEU ILE GLY GLY SEQRES 7 C 173 ASP GLY ASN ILE TYR GLU GLY CYS GLY TRP ASN HIS GLU SEQRES 8 C 173 GLY ALA HIS THR TYR GLY TYR ASN LYS LYS SER ILE SER SEQRES 9 C 173 ILE ALA PHE ILE GLY ASN PHE GLN ASN LYS SER ALA SER SEQRES 10 C 173 ASN LYS MET LEU ASN ALA ALA HIS LYS LEU ILE LEU CYS SEQRES 11 C 173 GLY LYS SER LYS GLY ILE LEU ARG GLU ASP VAL ARG VAL SEQRES 12 C 173 ILE GLY GLY LYS GLN VAL ILE ALA THR LEU SER PRO GLY SEQRES 13 C 173 PHE GLU LEU TYR LYS GLN ILE GLN ASN TRP PRO GLU TRP SEQRES 14 C 173 VAL SER THR PRO SEQRES 1 D 173 MET GLU PHE ASP GLU ASN CYS SER GLU ILE ILE LYS ARG SEQRES 2 D 173 ASN GLU TRP THR ASN VAL GLN ALA LYS ASN ILE ASN TYR SEQRES 3 D 173 LEU ILE ILE PRO ILE PRO TYR VAL ILE ILE HIS HIS THR SEQRES 4 D 173 VAL SER LEU GLU CYS ASN SER LYS ASP THR CYS ILE SER SEQRES 5 D 173 ASN ILE GLU ASN ILE ARG SER TYR HIS MET ASP THR LEU SEQRES 6 D 173 ASN TRP HIS ASP ILE GLY TYR SER PHE LEU ILE GLY GLY SEQRES 7 D 173 ASP GLY ASN ILE TYR GLU GLY CYS GLY TRP ASN HIS GLU SEQRES 8 D 173 GLY ALA HIS THR TYR GLY TYR ASN LYS LYS SER ILE SER SEQRES 9 D 173 ILE ALA PHE ILE GLY ASN PHE GLN ASN LYS SER ALA SER SEQRES 10 D 173 ASN LYS MET LEU ASN ALA ALA HIS LYS LEU ILE LEU CYS SEQRES 11 D 173 GLY LYS SER LYS GLY ILE LEU ARG GLU ASP VAL ARG VAL SEQRES 12 D 173 ILE GLY GLY LYS GLN VAL ILE ALA THR LEU SER PRO GLY SEQRES 13 D 173 PHE GLU LEU TYR LYS GLN ILE GLN ASN TRP PRO GLU TRP SEQRES 14 D 173 VAL SER THR PRO HET SO4 A 201 5 HET SO4 B 201 5 HET SO4 C 201 5 HET SO4 D 201 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 4(O4 S 2-) FORMUL 9 HOH *244(H2 O) HELIX 1 AA1 MET A 1 ASN A 6 1 6 HELIX 2 AA2 LYS A 12 THR A 17 1 6 HELIX 3 AA3 SER A 46 ASP A 63 1 18 HELIX 4 AA4 SER A 117 LYS A 134 1 18 HELIX 5 AA5 LYS A 147 VAL A 149 5 3 HELIX 6 AA6 GLY A 156 GLN A 164 1 9 HELIX 7 AA7 LYS B 12 THR B 17 1 6 HELIX 8 AA8 SER B 46 ASP B 63 1 18 HELIX 9 AA9 TYR B 98 LYS B 100 5 3 HELIX 10 AB1 SER B 117 LYS B 134 1 18 HELIX 11 AB2 LYS B 147 VAL B 149 5 3 HELIX 12 AB3 GLY B 156 GLN B 164 1 9 HELIX 13 AB4 LYS C 12 TRP C 16 5 5 HELIX 14 AB5 SER C 46 ASP C 63 1 18 HELIX 15 AB6 SER C 117 LYS C 134 1 18 HELIX 16 AB7 LYS C 147 VAL C 149 5 3 HELIX 17 AB8 GLY C 156 GLN C 164 1 9 HELIX 18 AB9 LYS D 12 TRP D 16 5 5 HELIX 19 AC1 SER D 46 ASP D 63 1 18 HELIX 20 AC2 SER D 117 LYS D 134 1 18 HELIX 21 AC3 LYS D 147 VAL D 149 5 3 HELIX 22 AC4 GLY D 156 GLN D 164 1 9 SHEET 1 AA1 5 ILE A 82 GLU A 84 0 SHEET 2 AA1 5 PHE A 74 ILE A 76 -1 N LEU A 75 O TYR A 83 SHEET 3 AA1 5 SER A 102 PHE A 107 1 O ALA A 106 N PHE A 74 SHEET 4 AA1 5 ILE A 31 HIS A 38 1 N ILE A 35 O ILE A 103 SHEET 5 AA1 5 LEU A 137 GLY A 145 1 O ARG A 138 N ILE A 31 SHEET 1 AA2 5 ILE B 82 GLU B 84 0 SHEET 2 AA2 5 PHE B 74 ILE B 76 -1 N LEU B 75 O TYR B 83 SHEET 3 AA2 5 SER B 102 PHE B 107 1 O ALA B 106 N PHE B 74 SHEET 4 AA2 5 ILE B 31 HIS B 38 1 N ILE B 35 O ILE B 103 SHEET 5 AA2 5 LEU B 137 GLY B 145 1 O ILE B 144 N ILE B 36 SHEET 1 AA3 5 ILE C 82 GLU C 84 0 SHEET 2 AA3 5 PHE C 74 ILE C 76 -1 N LEU C 75 O TYR C 83 SHEET 3 AA3 5 SER C 102 PHE C 107 1 O ALA C 106 N PHE C 74 SHEET 4 AA3 5 ILE C 31 HIS C 38 1 N ILE C 35 O ILE C 103 SHEET 5 AA3 5 LEU C 137 GLY C 145 1 O ILE C 144 N ILE C 36 SHEET 1 AA4 5 ILE D 82 GLU D 84 0 SHEET 2 AA4 5 PHE D 74 ILE D 76 -1 N LEU D 75 O TYR D 83 SHEET 3 AA4 5 SER D 102 PHE D 107 1 O ALA D 106 N PHE D 74 SHEET 4 AA4 5 ILE D 31 HIS D 38 1 N ILE D 35 O ILE D 103 SHEET 5 AA4 5 LEU D 137 GLY D 145 1 O ILE D 144 N ILE D 36 SSBOND 1 CYS A 44 CYS A 50 1555 1555 2.07 SSBOND 2 CYS B 44 CYS B 50 1555 1555 2.09 SSBOND 3 CYS C 44 CYS C 50 1555 1555 2.95 SSBOND 4 CYS D 44 CYS D 50 1555 1555 2.06 CISPEP 1 ILE A 29 PRO A 30 0 9.60 CISPEP 2 SER A 154 PRO A 155 0 11.76 CISPEP 3 ILE B 29 PRO B 30 0 1.39 CISPEP 4 SER B 154 PRO B 155 0 12.47 CISPEP 5 ILE C 29 PRO C 30 0 0.62 CISPEP 6 SER C 154 PRO C 155 0 13.57 CISPEP 7 ILE D 29 PRO D 30 0 -2.72 CISPEP 8 SER D 154 PRO D 155 0 8.64 SITE 1 AC1 5 GLY A 97 TYR A 98 ASN A 99 LYS A 100 SITE 2 AC1 5 HOH A 354 SITE 1 AC2 4 GLY B 97 TYR B 98 ASN B 99 HOH B 320 SITE 1 AC3 5 TYR C 96 GLY C 97 TYR C 98 ASN C 99 SITE 2 AC3 5 LYS C 100 SITE 1 AC4 4 GLY D 97 TYR D 98 ASN D 99 HOH D 308 CRYST1 67.898 68.607 71.699 90.00 94.92 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014728 0.000000 0.001267 0.00000 SCALE2 0.000000 0.014576 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013999 0.00000