HEADER IMMUNE SYSTEM 11-JUL-17 5XZ4 TITLE THE X-TAY STRUCTURE OF BUMBLEBEE PGRP-SA COMPND MOL_ID: 1; COMPND 2 MOLECULE: BUMBLEBEE PEPTIDOGLYCAN RECOGNITION PROTEIN SA; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOMBUS; SOURCE 3 ORGANISM_TAXID: 28641; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BUMBLEBEE, PGRP-SA, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR Y.J.LIU,J.X.HUANG,X.M.ZHAO,J.D.AN REVDAT 4 06-NOV-24 5XZ4 1 REMARK REVDAT 3 22-NOV-23 5XZ4 1 REMARK REVDAT 2 02-OCT-19 5XZ4 1 JRNL REVDAT 1 19-SEP-18 5XZ4 0 JRNL AUTH Y.J.LIU,X.M.ZHAO,J.X.HUANG,M.M.CHEN,J.D.AN JRNL TITL STRUCTURAL INSIGHTS INTO THE PREFERENTIAL BINDING OF JRNL TITL 2 PGRP-SAS FROM BUMBLEBEES AND HONEYBEES TO DAP-TYPE JRNL TITL 3 PEPTIDOGLYCANS RATHER THAN LYS-TYPE PEPTIDOGLYCANS. JRNL REF J IMMUNOL. V. 202 249 2019 JRNL REFN ESSN 1550-6606 JRNL PMID 30510067 JRNL DOI 10.4049/JIMMUNOL.1800439 REMARK 2 REMARK 2 RESOLUTION. 1.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 68420 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3635 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.41 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.45 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4917 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.13 REMARK 3 BIN R VALUE (WORKING SET) : 0.3790 REMARK 3 BIN FREE R VALUE SET COUNT : 262 REMARK 3 BIN FREE R VALUE : 0.4450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2606 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 338 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.01000 REMARK 3 B22 (A**2) : -7.13000 REMARK 3 B33 (A**2) : 3.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.37000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.015 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.013 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.027 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.458 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2689 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3641 ; 1.388 ; 1.928 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 332 ; 6.535 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 120 ;41.147 ;24.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 454 ;11.899 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;20.867 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 390 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2012 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1334 ; 1.009 ; 1.183 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1664 ; 1.320 ; 1.773 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1354 ; 1.588 ; 1.470 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4075 ; 2.334 ;17.692 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2688 ; 3.415 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 242 ;19.781 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2725 ;10.447 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 172 REMARK 3 ORIGIN FOR THE GROUP (A): -18.7071 -17.8910 5.1810 REMARK 3 T TENSOR REMARK 3 T11: 0.0025 T22: 0.0434 REMARK 3 T33: 0.0149 T12: -0.0009 REMARK 3 T13: -0.0005 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.0884 L22: 0.2171 REMARK 3 L33: 0.1085 L12: -0.0384 REMARK 3 L13: 0.0547 L23: -0.0257 REMARK 3 S TENSOR REMARK 3 S11: -0.0131 S12: -0.0246 S13: 0.0002 REMARK 3 S21: 0.0083 S22: -0.0014 S23: -0.0111 REMARK 3 S31: -0.0092 S32: -0.0070 S33: 0.0145 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 6 B 172 REMARK 3 ORIGIN FOR THE GROUP (A): -1.6854 -17.1790 29.0421 REMARK 3 T TENSOR REMARK 3 T11: 0.0063 T22: 0.0480 REMARK 3 T33: 0.0079 T12: 0.0007 REMARK 3 T13: -0.0035 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 0.0919 L22: 0.0850 REMARK 3 L33: 0.3416 L12: -0.0498 REMARK 3 L13: -0.1158 L23: -0.0258 REMARK 3 S TENSOR REMARK 3 S11: 0.0022 S12: -0.0160 S13: 0.0149 REMARK 3 S21: 0.0118 S22: 0.0116 S23: -0.0062 REMARK 3 S31: -0.0265 S32: 0.0008 S33: -0.0138 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5XZ4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1300003926. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72461 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.410 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.41 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.6 REMARK 200 DATA REDUNDANCY IN SHELL : 7.60 REMARK 200 R MERGE FOR SHELL (I) : 0.61900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1S2J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM CHLORIDE HEXAHYDRATE, REMARK 280 0.1 M TRIS HYDROCHLORIDE PH 8.5, 30% W/V POLYETHYLENE GLYCOL 4, REMARK 280 000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 57.97500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.97000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 57.97500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.97000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 464 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 GLU A 1 REMARK 465 PHE A 2 REMARK 465 ASN A 3 REMARK 465 GLU A 4 REMARK 465 SER A 5 REMARK 465 MET B 0 REMARK 465 GLU B 1 REMARK 465 PHE B 2 REMARK 465 ASN B 3 REMARK 465 GLU B 4 REMARK 465 SER B 5 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 67 O HOH A 301 1.80 REMARK 500 O HOH A 483 O HOH B 444 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 28 CG1 - CB - CG2 ANGL. DEV. = -13.3 DEGREES REMARK 500 PRO A 172 C - N - CA ANGL. DEV. = 13.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 139 32.43 -97.93 REMARK 500 ASP B 139 47.00 -98.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 485 DISTANCE = 6.00 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 201 DBREF 5XZ4 A 0 172 PDB 5XZ4 5XZ4 0 172 DBREF 5XZ4 B 0 172 PDB 5XZ4 5XZ4 0 172 SEQRES 1 A 173 MET GLU PHE ASN GLU SER CYS PRO GLN ILE ILE GLY ARG SEQRES 2 A 173 SER GLU TRP THR ASP VAL ASP ALA LYS SER ILE ASN TYR SEQRES 3 A 173 LEU ILE ILE PRO ILE PRO TYR VAL ILE ILE HIS HIS THR SEQRES 4 A 173 VAL THR ALA GLU CYS ASN THR ARG SER GLU CYS ILE ALA SEQRES 5 A 173 GLN ALA GLU ASN ILE ARG SER TYR HIS MET ASP SER ASN SEQRES 6 A 173 GLY TRP ASP ASP ILE GLY TYR SER PHE LEU ILE GLY GLY SEQRES 7 A 173 ASP GLY ASN VAL TYR GLU GLY ARG GLY TRP ASN ARG GLU SEQRES 8 A 173 GLY ALA HIS THR ILE GLY TYR ASN LYS LYS SER VAL GLY SEQRES 9 A 173 ILE GLY PHE ILE GLY ASN PHE GLN GLU LYS ALA ALA SER SEQRES 10 A 173 ASP LYS MET LEU ASN ALA ALA HIS ALA LEU ILE HIS CYS SEQRES 11 A 173 GLY LYS SER LYS GLY ILE LEU ARG GLU ASP ILE ARG VAL SEQRES 12 A 173 ILE GLY ALA LYS GLN VAL THR ALA THR MET SER PRO GLY SEQRES 13 A 173 SER LYS LEU GLN LYS GLN ILE LYS ASN TRP LEU GLU TRP SEQRES 14 A 173 VAL PRO THR PRO SEQRES 1 B 173 MET GLU PHE ASN GLU SER CYS PRO GLN ILE ILE GLY ARG SEQRES 2 B 173 SER GLU TRP THR ASP VAL ASP ALA LYS SER ILE ASN TYR SEQRES 3 B 173 LEU ILE ILE PRO ILE PRO TYR VAL ILE ILE HIS HIS THR SEQRES 4 B 173 VAL THR ALA GLU CYS ASN THR ARG SER GLU CYS ILE ALA SEQRES 5 B 173 GLN ALA GLU ASN ILE ARG SER TYR HIS MET ASP SER ASN SEQRES 6 B 173 GLY TRP ASP ASP ILE GLY TYR SER PHE LEU ILE GLY GLY SEQRES 7 B 173 ASP GLY ASN VAL TYR GLU GLY ARG GLY TRP ASN ARG GLU SEQRES 8 B 173 GLY ALA HIS THR ILE GLY TYR ASN LYS LYS SER VAL GLY SEQRES 9 B 173 ILE GLY PHE ILE GLY ASN PHE GLN GLU LYS ALA ALA SER SEQRES 10 B 173 ASP LYS MET LEU ASN ALA ALA HIS ALA LEU ILE HIS CYS SEQRES 11 B 173 GLY LYS SER LYS GLY ILE LEU ARG GLU ASP ILE ARG VAL SEQRES 12 B 173 ILE GLY ALA LYS GLN VAL THR ALA THR MET SER PRO GLY SEQRES 13 B 173 SER LYS LEU GLN LYS GLN ILE LYS ASN TRP LEU GLU TRP SEQRES 14 B 173 VAL PRO THR PRO HET SO4 A 201 5 HET SO4 A 202 5 HET TRS A 203 8 HET SO4 B 201 5 HETNAM SO4 SULFATE ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN TRS TRIS BUFFER FORMUL 3 SO4 3(O4 S 2-) FORMUL 5 TRS C4 H12 N O3 1+ FORMUL 7 HOH *338(H2 O) HELIX 1 AA1 GLY A 11 THR A 16 1 6 HELIX 2 AA2 THR A 45 SER A 63 1 19 HELIX 3 AA3 SER A 116 LYS A 133 1 18 HELIX 4 AA4 LYS A 146 VAL A 148 5 3 HELIX 5 AA5 GLY A 155 LYS A 163 1 9 HELIX 6 AA6 GLY B 11 THR B 16 1 6 HELIX 7 AA7 THR B 45 SER B 63 1 19 HELIX 8 AA8 SER B 116 LYS B 133 1 18 HELIX 9 AA9 LYS B 146 VAL B 148 5 3 HELIX 10 AB1 GLY B 155 LYS B 163 1 9 SHEET 1 AA1 5 VAL A 81 GLU A 83 0 SHEET 2 AA1 5 PHE A 73 ILE A 75 -1 N LEU A 74 O TYR A 82 SHEET 3 AA1 5 SER A 101 PHE A 106 1 O GLY A 105 N PHE A 73 SHEET 4 AA1 5 ILE A 30 HIS A 37 1 N ILE A 34 O ILE A 104 SHEET 5 AA1 5 LEU A 136 GLY A 144 1 O ILE A 143 N ILE A 35 SHEET 1 AA2 6 ILE B 9 ILE B 10 0 SHEET 2 AA2 6 VAL B 81 GLU B 83 1 O VAL B 81 N ILE B 10 SHEET 3 AA2 6 PHE B 73 ILE B 75 -1 N LEU B 74 O TYR B 82 SHEET 4 AA2 6 SER B 101 PHE B 106 1 O GLY B 105 N PHE B 73 SHEET 5 AA2 6 ILE B 30 HIS B 37 1 N ILE B 34 O VAL B 102 SHEET 6 AA2 6 LEU B 136 GLY B 144 1 O ILE B 143 N ILE B 35 SSBOND 1 CYS A 6 CYS A 129 1555 1555 2.05 SSBOND 2 CYS A 43 CYS A 49 1555 1555 2.13 SSBOND 3 CYS B 6 CYS B 129 1555 1555 2.05 SSBOND 4 CYS B 43 CYS B 49 1555 1555 2.08 CISPEP 1 ILE A 28 PRO A 29 0 7.74 CISPEP 2 SER A 153 PRO A 154 0 15.54 CISPEP 3 ILE B 28 PRO B 29 0 1.74 CISPEP 4 SER B 153 PRO B 154 0 12.95 SITE 1 AC1 6 GLY A 96 TYR A 97 ASN A 98 LYS A 99 SITE 2 AC1 6 HOH A 334 HOH A 375 SITE 1 AC2 6 SER A 22 ILE A 23 TYR A 25 ARG A 89 SITE 2 AC2 6 HOH A 320 HOH A 405 SITE 1 AC3 11 GLU A 14 TRP A 15 ASP A 17 ILE A 50 SITE 2 AC3 11 GLU A 54 ASN A 55 SER A 58 HOH A 309 SITE 3 AC3 11 HOH A 410 HOH B 362 HOH B 369 SITE 1 AC4 6 ILE B 95 GLY B 96 TYR B 97 ASN B 98 SITE 2 AC4 6 LYS B 99 HOH B 357 CRYST1 115.950 49.940 78.770 90.00 120.37 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008624 0.000000 0.005054 0.00000 SCALE2 0.000000 0.020024 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014714 0.00000 CONECT 6 966 CONECT 302 349 CONECT 349 302 CONECT 966 6 CONECT 1310 2270 CONECT 1606 1653 CONECT 1653 1606 CONECT 2270 1310 CONECT 2609 2610 2611 2612 2613 CONECT 2610 2609 CONECT 2611 2609 CONECT 2612 2609 CONECT 2613 2609 CONECT 2614 2615 2616 2617 2618 CONECT 2615 2614 CONECT 2616 2614 CONECT 2617 2614 CONECT 2618 2614 CONECT 2619 2620 2621 2622 2623 CONECT 2620 2619 2624 CONECT 2621 2619 2625 CONECT 2622 2619 2626 CONECT 2623 2619 CONECT 2624 2620 CONECT 2625 2621 CONECT 2626 2622 CONECT 2627 2628 2629 2630 2631 CONECT 2628 2627 CONECT 2629 2627 CONECT 2630 2627 CONECT 2631 2627 MASTER 394 0 4 10 11 0 9 6 2967 2 31 28 END