HEADER HYDROLASE 14-JUL-17 5XZU TITLE CRYSTAL STRUCTURE OF GH10 XYLANASE FROM BISPORA. SP MEY-1 WITH TITLE 2 XYLOBIOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-XYLANASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 19-424; COMPND 5 EC: 3.2.1.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BISPORA SP. MEY-1; SOURCE 3 ORGANISM_TAXID: 554688; SOURCE 4 GENE: XYL10C; SOURCE 5 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS GS115; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 644223; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: GS115 KEYWDS GH10 FAMILY, XYLANASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.YOU,C.C.CHEN,T.TU,R.T.GUO,H.Y.LUO,B.YAO REVDAT 3 29-JUL-20 5XZU 1 COMPND REMARK HET HETNAM REVDAT 3 2 1 FORMUL LINK SITE ATOM REVDAT 2 15-MAY-19 5XZU 1 AUTHOR JRNL REVDAT 1 02-MAY-18 5XZU 0 JRNL AUTH S.YOU,C.C.CHEN,T.TU,X.WANG,R.MA,H.Y.CAI,R.T.GUO,H.Y.LUO, JRNL AUTH 2 B.YAO JRNL TITL INSIGHT INTO THE FUNCTIONAL ROLES OF GLU175 IN THE JRNL TITL 2 HYPERTHERMOSTABLE XYLANASE XYL10C-DELTA N THROUGH STRUCTURAL JRNL TITL 3 ANALYSIS AND SITE-SATURATION MUTAGENESIS. JRNL REF BIOTECHNOL BIOFUELS V. 11 159 2018 JRNL REFN ESSN 1754-6834 JRNL PMID 29930705 JRNL DOI 10.1186/S13068-018-1150-8 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 75179 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.127 REMARK 3 R VALUE (WORKING SET) : 0.124 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4011 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5561 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.1700 REMARK 3 BIN FREE R VALUE SET COUNT : 283 REMARK 3 BIN FREE R VALUE : 0.2340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5285 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 93 REMARK 3 SOLVENT ATOMS : 607 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.53000 REMARK 3 B22 (A**2) : -0.72000 REMARK 3 B33 (A**2) : 1.89000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.20000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.114 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.090 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.071 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.973 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.983 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5539 ; 0.011 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 4899 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7578 ; 1.489 ; 1.938 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11284 ; 0.811 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 665 ; 7.787 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 279 ;33.681 ;25.484 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 800 ;14.827 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;12.297 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 831 ; 0.113 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6375 ; 0.015 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1317 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2666 ; 4.126 ; 3.006 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2665 ; 4.123 ; 3.005 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3329 ; 4.488 ; 4.500 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3330 ; 4.488 ; 4.500 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2872 ; 6.330 ; 3.426 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2872 ; 6.330 ; 3.426 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4250 ; 6.773 ; 4.998 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6569 ; 5.715 ;37.471 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6455 ; 5.653 ;37.009 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 10436 ; 6.349 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 439 ;23.550 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 10447 ;14.046 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5XZU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1300004418. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL15A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00919 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79182 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.9600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 19% PEG 3350, 0.4 M MAGNESIUM REMARK 280 CHLORIDE, 0.1 M BIS-TRIS HYDROCHLORIDE PH 6.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 67.63700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.56800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 67.63700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 41.56800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 524 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 336 REMARK 465 GLN B 335 REMARK 465 HIS B 336 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 136 O4 BGC C 2 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 771 O HOH A 771 2556 2.02 REMARK 500 O HOH A 681 O HOH B 624 4555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 9 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 LEU B 254 CA - CB - CG ANGL. DEV. = 14.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 49 -38.08 -142.17 REMARK 500 GLU A 136 60.04 63.44 REMARK 500 ASP A 141 102.36 -170.95 REMARK 500 GLU A 249 40.34 -142.11 REMARK 500 ASP A 290 160.61 74.31 REMARK 500 ASN B 49 -33.29 -142.57 REMARK 500 LEU B 87 -65.90 -90.95 REMARK 500 GLU B 249 41.68 -144.20 REMARK 500 ASP B 290 159.84 73.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TRP A 15 PHE A 16 140.59 REMARK 500 TRP B 15 PHE B 16 140.42 REMARK 500 GLY B 144 SER B 145 -146.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 825 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH A 826 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH A 827 DISTANCE = 6.45 ANGSTROMS REMARK 525 HOH A 828 DISTANCE = 6.89 ANGSTROMS REMARK 525 HOH B 779 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH B 780 DISTANCE = 7.42 ANGSTROMS DBREF 5XZU A 2 336 UNP D0QF43 D0QF43_9ASCO 85 419 DBREF 5XZU B 2 336 UNP D0QF43 D0QF43_9ASCO 85 419 SEQRES 1 A 335 TRP GLY LEU ASN ASN ALA ALA ARG ALA ASP GLY LYS LEU SEQRES 2 A 335 TRP PHE GLY THR ALA ALA ASP ILE PRO GLY LEU GLU GLN SEQRES 3 A 335 ASP ASP ARG TYR TYR MET LYS GLU TYR ASN ASN THR HIS SEQRES 4 A 335 ASP PHE GLY GLY THR THR PRO ALA ASN ILE MET LYS PHE SEQRES 5 A 335 MET PHE THR GLU PRO GLU GLN ASN VAL PHE ASN PHE THR SEQRES 6 A 335 GLY ALA GLN GLU PHE LEU ASP ILE ALA PHE ALA SER HIS SEQRES 7 A 335 LYS LEU VAL ARG CYS HIS ASN LEU ILE TRP GLN SER GLU SEQRES 8 A 335 LEU PRO THR TRP VAL THR ASN PRO THR THR ASN TRP THR SEQRES 9 A 335 ASN GLU THR LEU SER LYS VAL LEU GLN ASN HIS VAL TYR SEQRES 10 A 335 THR LEU VAL SER HIS PHE GLY ASP GLN CYS TYR SER TRP SEQRES 11 A 335 ASP VAL VAL ASN GLU ALA LEU SER ASP ASP PRO ALA GLY SEQRES 12 A 335 SER TYR GLN ASN ASN ILE TRP PHE ASP THR ILE GLY PRO SEQRES 13 A 335 GLU TYR VAL ALA MET ALA PHE GLU TYR ALA GLU LYS ALA SEQRES 14 A 335 VAL LYS ASP HIS LYS LEU ASN VAL LYS LEU TYR TYR ASN SEQRES 15 A 335 ASP TYR ASN ILE GLU TYR PRO GLY PRO LYS SER THR ALA SEQRES 16 A 335 ALA GLN ASN ILE VAL LYS GLU LEU LYS ALA ARG ASN ILE SEQRES 17 A 335 GLN ILE ASP GLY VAL GLY LEU GLU SER HIS PHE ILE ALA SEQRES 18 A 335 GLY GLU THR PRO SER GLN ALA THR GLN ILE THR ASN MET SEQRES 19 A 335 ALA ASP PHE THR SER LEU ASP ILE ASP VAL ALA VAL THR SEQRES 20 A 335 GLU LEU ASP VAL ARG LEU TYR LEU PRO PRO ASN ALA THR SEQRES 21 A 335 SER GLU ALA GLN GLN VAL ALA ASP TYR TYR ALA THR VAL SEQRES 22 A 335 ALA ALA CYS ALA ALA THR GLU ARG CYS ILE GLY ILE THR SEQRES 23 A 335 VAL TRP ASP PHE ASP ASP THR TYR SER TRP VAL PRO SER SEQRES 24 A 335 THR PHE ALA GLY GLN GLY TYR ALA ASP LEU PHE PHE GLN SEQRES 25 A 335 PRO ASP GLY PRO ASN THR PRO LEU VAL LYS LYS ALA ALA SEQRES 26 A 335 TYR ASP GLY CYS LEU GLN ALA LEU GLN HIS SEQRES 1 B 335 TRP GLY LEU ASN ASN ALA ALA ARG ALA ASP GLY LYS LEU SEQRES 2 B 335 TRP PHE GLY THR ALA ALA ASP ILE PRO GLY LEU GLU GLN SEQRES 3 B 335 ASP ASP ARG TYR TYR MET LYS GLU TYR ASN ASN THR HIS SEQRES 4 B 335 ASP PHE GLY GLY THR THR PRO ALA ASN ILE MET LYS PHE SEQRES 5 B 335 MET PHE THR GLU PRO GLU GLN ASN VAL PHE ASN PHE THR SEQRES 6 B 335 GLY ALA GLN GLU PHE LEU ASP ILE ALA PHE ALA SER HIS SEQRES 7 B 335 LYS LEU VAL ARG CYS HIS ASN LEU ILE TRP GLN SER GLU SEQRES 8 B 335 LEU PRO THR TRP VAL THR ASN PRO THR THR ASN TRP THR SEQRES 9 B 335 ASN GLU THR LEU SER LYS VAL LEU GLN ASN HIS VAL TYR SEQRES 10 B 335 THR LEU VAL SER HIS PHE GLY ASP GLN CYS TYR SER TRP SEQRES 11 B 335 ASP VAL VAL ASN GLU ALA LEU SER ASP ASP PRO ALA GLY SEQRES 12 B 335 SER TYR GLN ASN ASN ILE TRP PHE ASP THR ILE GLY PRO SEQRES 13 B 335 GLU TYR VAL ALA MET ALA PHE GLU TYR ALA GLU LYS ALA SEQRES 14 B 335 VAL LYS ASP HIS LYS LEU ASN VAL LYS LEU TYR TYR ASN SEQRES 15 B 335 ASP TYR ASN ILE GLU TYR PRO GLY PRO LYS SER THR ALA SEQRES 16 B 335 ALA GLN ASN ILE VAL LYS GLU LEU LYS ALA ARG ASN ILE SEQRES 17 B 335 GLN ILE ASP GLY VAL GLY LEU GLU SER HIS PHE ILE ALA SEQRES 18 B 335 GLY GLU THR PRO SER GLN ALA THR GLN ILE THR ASN MET SEQRES 19 B 335 ALA ASP PHE THR SER LEU ASP ILE ASP VAL ALA VAL THR SEQRES 20 B 335 GLU LEU ASP VAL ARG LEU TYR LEU PRO PRO ASN ALA THR SEQRES 21 B 335 SER GLU ALA GLN GLN VAL ALA ASP TYR TYR ALA THR VAL SEQRES 22 B 335 ALA ALA CYS ALA ALA THR GLU ARG CYS ILE GLY ILE THR SEQRES 23 B 335 VAL TRP ASP PHE ASP ASP THR TYR SER TRP VAL PRO SER SEQRES 24 B 335 THR PHE ALA GLY GLN GLY TYR ALA ASP LEU PHE PHE GLN SEQRES 25 B 335 PRO ASP GLY PRO ASN THR PRO LEU VAL LYS LYS ALA ALA SEQRES 26 B 335 TYR ASP GLY CYS LEU GLN ALA LEU GLN HIS HET BGC C 1 12 HET BGC C 2 11 HET NAG A 401 14 HET NAG A 402 14 HET NAG A 403 14 HET NAG B 401 14 HET NAG B 402 14 HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE FORMUL 3 BGC 2(C6 H12 O6) FORMUL 4 NAG 5(C8 H15 N O6) FORMUL 9 HOH *607(H2 O) HELIX 1 AA1 GLY A 3 ASP A 11 1 9 HELIX 2 AA2 GLY A 24 ASP A 28 5 5 HELIX 3 AA3 ASP A 29 ASN A 37 1 9 HELIX 4 AA4 LYS A 52 GLU A 57 1 6 HELIX 5 AA5 PHE A 65 SER A 78 1 14 HELIX 6 AA6 PRO A 94 ASN A 99 1 6 HELIX 7 AA7 THR A 105 GLY A 125 1 21 HELIX 8 AA8 ASP A 126 CYS A 128 5 3 HELIX 9 AA9 ASN A 149 GLY A 156 1 8 HELIX 10 AB1 PRO A 157 HIS A 174 1 18 HELIX 11 AB2 GLY A 191 ARG A 207 1 17 HELIX 12 AB3 SER A 227 SER A 240 1 14 HELIX 13 AB4 ASN A 259 THR A 280 1 22 HELIX 14 AB5 TRP A 297 PHE A 302 1 6 HELIX 15 AB6 LYS A 324 GLN A 335 1 12 HELIX 16 AB7 GLY B 3 ASP B 11 1 9 HELIX 17 AB8 GLY B 24 ASP B 28 5 5 HELIX 18 AB9 ASP B 29 ASN B 37 1 9 HELIX 19 AC1 LYS B 52 GLU B 57 1 6 HELIX 20 AC2 PHE B 65 SER B 78 1 14 HELIX 21 AC3 PRO B 94 ASN B 99 1 6 HELIX 22 AC4 THR B 105 GLY B 125 1 21 HELIX 23 AC5 ASP B 126 CYS B 128 5 3 HELIX 24 AC6 ASN B 149 GLY B 156 1 8 HELIX 25 AC7 GLU B 158 HIS B 174 1 17 HELIX 26 AC8 GLY B 191 ARG B 207 1 17 HELIX 27 AC9 SER B 227 SER B 240 1 14 HELIX 28 AD1 ASN B 259 THR B 280 1 22 HELIX 29 AD2 ASP B 292 SER B 296 5 5 HELIX 30 AD3 TRP B 297 PHE B 302 1 6 HELIX 31 AD4 LYS B 324 LEU B 334 1 11 SHEET 1 AA111 HIS A 219 ILE A 221 0 SHEET 2 AA111 GLN A 305 GLY A 306 0 SHEET 3 AA111 GLY A 213 LEU A 216 0 SHEET 4 AA111 LYS A 179 ASP A 184 1 N TYR A 182 O GLY A 215 SHEET 5 AA111 SER A 130 ASN A 135 1 N TRP A 131 O TYR A 181 SHEET 6 AA111 LEU A 81 ILE A 88 1 N ILE A 88 O ASN A 135 SHEET 7 AA111 GLY A 44 PRO A 47 1 N THR A 45 O ARG A 83 SHEET 8 AA111 TRP A 15 ALA A 20 1 N THR A 18 O GLY A 44 SHEET 9 AA111 CYS A 283 VAL A 288 1 O ILE A 286 N GLY A 17 SHEET 10 AA111 ASP A 244 TYR A 255 1 N LEU A 250 O THR A 287 SHEET 11 AA111 GLN A 305 GLY A 306 -1 O GLY A 306 N LEU A 254 SHEET 1 AA2 2 PHE A 311 PHE A 312 0 SHEET 2 AA2 2 VAL A 322 LYS A 323 -1 O VAL A 322 N PHE A 312 SHEET 1 AA311 HIS B 219 ILE B 221 0 SHEET 2 AA311 GLN B 305 GLY B 306 0 SHEET 3 AA311 GLY B 213 LEU B 216 0 SHEET 4 AA311 LYS B 179 ASP B 184 1 N TYR B 182 O GLY B 215 SHEET 5 AA311 SER B 130 ASN B 135 1 N TRP B 131 O TYR B 181 SHEET 6 AA311 LEU B 81 ILE B 88 1 N CYS B 84 O SER B 130 SHEET 7 AA311 GLY B 44 PRO B 47 1 N THR B 45 O ARG B 83 SHEET 8 AA311 TRP B 15 ALA B 20 1 N ALA B 20 O THR B 46 SHEET 9 AA311 CYS B 283 VAL B 288 1 O ILE B 286 N GLY B 17 SHEET 10 AA311 ASP B 244 TYR B 255 1 N VAL B 245 O ILE B 284 SHEET 11 AA311 GLN B 305 GLY B 306 -1 O GLY B 306 N LEU B 254 SHEET 1 AA4 2 PHE B 311 PHE B 312 0 SHEET 2 AA4 2 VAL B 322 LYS B 323 -1 O VAL B 322 N PHE B 312 SSBOND 1 CYS A 84 CYS A 128 1555 1555 2.06 SSBOND 2 CYS A 277 CYS A 283 1555 1555 2.23 SSBOND 3 CYS B 84 CYS B 128 1555 1555 2.08 SSBOND 4 CYS B 277 CYS B 283 1555 1555 2.21 LINK ND2 ASN A 37 C1 NAG A 403 1555 1555 1.44 LINK ND2 ASN A 64 C1 NAG A 401 1555 1555 1.43 LINK ND2 ASN A 259 C1 NAG A 402 1555 1555 1.44 LINK ND2 ASN B 37 C1 NAG B 402 1555 1555 1.44 LINK ND2 ASN B 259 C1 NAG B 401 1555 1555 1.45 LINK O4 BGC C 1 C1 BGC C 2 1555 1555 1.46 CISPEP 1 ILE A 22 PRO A 23 0 13.31 CISPEP 2 HIS A 85 ASN A 86 0 -8.23 CISPEP 3 ASP A 141 PRO A 142 0 -4.67 CISPEP 4 LEU A 256 PRO A 257 0 -5.41 CISPEP 5 ILE B 22 PRO B 23 0 1.32 CISPEP 6 HIS B 85 ASN B 86 0 -13.91 CISPEP 7 ASP B 141 PRO B 142 0 -7.81 CISPEP 8 LEU B 256 PRO B 257 0 -0.14 CRYST1 135.274 83.136 65.387 90.00 94.25 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007392 0.000000 0.000549 0.00000 SCALE2 0.000000 0.012028 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015336 0.00000