HEADER FLUORESCENT PROTEIN 14-JUL-17 5Y00 TITLE ACID-TOLERANT MONOMERIC GFP, GAMILLUS, FLUORESCENCE (ON) STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GREEN FLUORESCENT PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OLINDIAS; SOURCE 3 ORGANISM_TAXID: 264043; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FLUORESCENT PROTEIN, BETA BARREL, GFP-LIKE PROTEIN, TRANS-CHROMOPHORE EXPDTA X-RAY DIFFRACTION AUTHOR R.NAKASHIMA,K.SAKURAI,H.SHINODA,T.MATSUDA,T.NAGAI REVDAT 3 15-NOV-23 5Y00 1 LINK ATOM REVDAT 2 28-MAR-18 5Y00 1 JRNL REVDAT 1 17-JAN-18 5Y00 0 JRNL AUTH H.SHINODA,Y.MA,R.NAKASHIMA,K.SAKURAI,T.MATSUDA,T.NAGAI JRNL TITL ACID-TOLERANT MONOMERIC GFP FROM OLINDIAS FORMOSA. JRNL REF CELL CHEM BIOL V. 25 330 2018 JRNL REFN ESSN 2451-9448 JRNL PMID 29290624 JRNL DOI 10.1016/J.CHEMBIOL.2017.12.005 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 113.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 86693 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.146 REMARK 3 R VALUE (WORKING SET) : 0.145 REMARK 3 FREE R VALUE : 0.158 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 4514 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6419 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.2000 REMARK 3 BIN FREE R VALUE SET COUNT : 311 REMARK 3 BIN FREE R VALUE : 0.2320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1813 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 269 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.039 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.040 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.024 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.704 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.969 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1923 ; 0.039 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1795 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2613 ; 3.332 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4162 ; 1.395 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 243 ; 7.010 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 83 ;35.321 ;24.458 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 325 ;11.445 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;15.003 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 284 ; 0.191 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2169 ; 0.021 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 443 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 936 ; 1.680 ; 1.284 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 935 ; 1.674 ; 1.284 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1173 ; 2.376 ; 1.925 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1174 ; 2.376 ; 1.925 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 986 ; 3.600 ; 1.547 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 986 ; 3.599 ; 1.547 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1435 ; 5.136 ; 2.189 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2320 ; 6.476 ;12.084 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2194 ; 6.255 ;11.269 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5Y00 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1300004331. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.900 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 90910 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 114.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.64700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 78.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM PHOSPHATE, SODIUM CITRATE, REMARK 280 SODIUM CHLORIDE, HEPES, PH5.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y,-Z REMARK 290 16555 X,-Y,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z,-X,-Y+1/2 REMARK 290 19555 -Z,-X+1/2,Y REMARK 290 20555 -Z+1/2,X,-Y REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z,-X REMARK 290 23555 Y,-Z,-X+1/2 REMARK 290 24555 -Y,-Z+1/2,X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 80.57900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.57900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 80.57900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 80.57900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 80.57900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 80.57900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 80.57900 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 80.57900 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 80.57900 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 80.57900 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 80.57900 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 80.57900 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 80.57900 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 80.57900 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 80.57900 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 80.57900 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 80.57900 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 80.57900 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 80.57900 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 80.57900 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 80.57900 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 80.57900 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 80.57900 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 80.57900 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 80.57900 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 80.57900 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 80.57900 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 80.57900 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 80.57900 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 80.57900 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 80.57900 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 80.57900 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 80.57900 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 80.57900 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 80.57900 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 80.57900 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -33 REMARK 465 ARG A -32 REMARK 465 GLY A -31 REMARK 465 SER A -30 REMARK 465 HIS A -29 REMARK 465 HIS A -28 REMARK 465 HIS A -27 REMARK 465 HIS A -26 REMARK 465 HIS A -25 REMARK 465 HIS A -24 REMARK 465 GLY A -23 REMARK 465 MET A -22 REMARK 465 ALA A -21 REMARK 465 SER A -20 REMARK 465 MET A -19 REMARK 465 THR A -18 REMARK 465 GLY A -17 REMARK 465 GLY A -16 REMARK 465 GLN A -15 REMARK 465 GLN A -14 REMARK 465 MET A -13 REMARK 465 GLY A -12 REMARK 465 ARG A -11 REMARK 465 ASP A -10 REMARK 465 LEU A -9 REMARK 465 TYR A -8 REMARK 465 ASP A -7 REMARK 465 ASP A -6 REMARK 465 ASP A -5 REMARK 465 ASP A -4 REMARK 465 LYS A -3 REMARK 465 ASP A -2 REMARK 465 PRO A -1 REMARK 465 THR A 0 REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 SER A 3 REMARK 465 LYS A 4 REMARK 465 GLY A 5 REMARK 465 GLU A 6 REMARK 465 GLU A 7 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN A 15 O HOH A 401 2.07 REMARK 500 OD1 ASN A 25 O HOH A 402 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA A 8 N ALA A 8 CA 0.170 REMARK 500 GLU A 23 CG GLU A 23 CD 0.143 REMARK 500 ASN A 48 CB ASN A 48 CG -0.206 REMARK 500 GLU A 89 CD GLU A 89 OE1 0.067 REMARK 500 GLU A 104 CD GLU A 104 OE2 -0.264 REMARK 500 ASP A 106 CG ASP A 106 OD2 0.162 REMARK 500 GLU A 114 CD GLU A 114 OE2 0.080 REMARK 500 SER A 131 CB SER A 131 OG -0.081 REMARK 500 ASP A 183 CB ASP A 183 CG -0.129 REMARK 500 ASP A 183 CG ASP A 183 OD2 0.144 REMARK 500 GLN A 205 CD GLN A 205 NE2 -0.208 REMARK 500 ASN A 229 CG ASN A 229 OD1 0.133 REMARK 500 ASN A 229 CG ASN A 229 ND2 -0.176 REMARK 500 GLU A 236 CD GLU A 236 OE2 0.087 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA A 8 N - CA - CB ANGL. DEV. = 8.6 DEGREES REMARK 500 TYR A 79 CB - CG - CD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 TYR A 79 CG - CD1 - CE1 ANGL. DEV. = 5.2 DEGREES REMARK 500 TYR A 79 CZ - CE2 - CD2 ANGL. DEV. = 7.8 DEGREES REMARK 500 ASP A 82 CB - CG - OD1 ANGL. DEV. = 11.5 DEGREES REMARK 500 PHE A 86 CG - CD1 - CE1 ANGL. DEV. = -6.8 DEGREES REMARK 500 ARG A 99 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 GLU A 104 OE1 - CD - OE2 ANGL. DEV. = -17.7 DEGREES REMARK 500 GLU A 104 CG - CD - OE1 ANGL. DEV. = 20.5 DEGREES REMARK 500 ASP A 106 CB - CG - OD1 ANGL. DEV. = -10.2 DEGREES REMARK 500 ASP A 106 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 GLU A 114 OE1 - CD - OE2 ANGL. DEV. = 8.7 DEGREES REMARK 500 LYS A 125 CD - CE - NZ ANGL. DEV. = -17.7 DEGREES REMARK 500 SER A 131 N - CA - CB ANGL. DEV. = -14.3 DEGREES REMARK 500 PHE A 133 CB - CG - CD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 PHE A 133 CB - CG - CD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP A 134 CB - CG - OD2 ANGL. DEV. = -7.8 DEGREES REMARK 500 PHE A 144 CB - CG - CD1 ANGL. DEV. = -4.8 DEGREES REMARK 500 LEU A 164 CB - CG - CD1 ANGL. DEV. = 18.7 DEGREES REMARK 500 LYS A 198 CD - CE - NZ ANGL. DEV. = 16.2 DEGREES REMARK 500 ASP A 214 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ARG A 216 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 216 NE - CZ - NH2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP A 235 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 LYS A 239 CB - CG - CD ANGL. DEV. = 16.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 14 65.98 -115.27 REMARK 500 SER A 94 -178.69 78.38 REMARK 500 ASP A 106 -73.25 -123.72 REMARK 500 ASP A 106 -125.85 -159.74 REMARK 500 ASN A 160 12.48 -141.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 99 0.09 SIDE CHAIN REMARK 500 GLU A 104 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 303 DBREF 5Y00 A -33 239 PDB 5Y00 5Y00 -33 239 SEQRES 1 A 271 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY MET ALA SEQRES 2 A 271 SER MET THR GLY GLY GLN GLN MET GLY ARG ASP LEU TYR SEQRES 3 A 271 ASP ASP ASP ASP LYS ASP PRO THR MET VAL SER LYS GLY SEQRES 4 A 271 GLU GLU ALA SER GLY ARG ALA LEU PHE GLN TYR PRO MET SEQRES 5 A 271 THR SER LYS ILE GLU LEU ASN GLY GLU ILE ASN GLY LYS SEQRES 6 A 271 LYS PHE LYS VAL ALA GLY GLU GLY PHE THR PRO SER SER SEQRES 7 A 271 GLY ARG PHE ASN MET HIS ALA TYR CYS THR THR GLY ASP SEQRES 8 A 271 LEU PRO MET SER TRP VAL VAL ILE ALA SER PRO LEU CRQ SEQRES 9 A 271 PHE HIS MET PHE ALA HIS TYR PRO GLU ASP ILE THR HIS SEQRES 10 A 271 PHE PHE GLN GLU CYS PHE PRO GLY SER TYR THR LEU ASP SEQRES 11 A 271 ARG THR LEU ARG MET GLU GLY ASP GLY THR LEU THR THR SEQRES 12 A 271 HIS HIS GLU TYR SER LEU GLU ASP GLY CYS VAL THR SER SEQRES 13 A 271 LYS THR THR LEU ASN ALA SER GLY PHE ASP PRO LYS GLY SEQRES 14 A 271 ALA THR MET THR LYS SER PHE VAL LYS GLN LEU PRO ASN SEQRES 15 A 271 GLU VAL LYS ILE THR PRO HIS GLY PRO ASN GLY ILE ARG SEQRES 16 A 271 LEU THR SER THR VAL LEU TYR LEU LYS GLU ASP GLY THR SEQRES 17 A 271 ILE GLN ILE GLY THR GLN ASP CYS ILE VAL THR PRO VAL SEQRES 18 A 271 GLY GLY ARG LYS VAL THR GLN PRO LYS ALA HIS PHE LEU SEQRES 19 A 271 HIS THR GLN ILE ILE GLN LYS LYS ASP PRO ASN ASP THR SEQRES 20 A 271 ARG ASP HIS ILE VAL GLN THR GLU LEU ALA VAL ALA GLY SEQRES 21 A 271 ASN LEU TRP HIS GLY MET ASP GLU LEU TYR LYS HET CRQ A 70 24 HET PO4 A 301 5 HET GOL A 302 6 HET CL A 303 1 HETNAM CRQ [2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-(4-HYDROXY- HETNAM 2 CRQ BENZYLIDENE)-5-OXO-4,5-DIHYDRO-IMIDAZOL-1-YL]-ACETIC HETNAM 3 CRQ ACID HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN CRQ CHROMOPHORE (GLN-TYR-GLY) HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 CRQ C16 H16 N4 O5 FORMUL 2 PO4 O4 P 3- FORMUL 3 GOL C3 H8 O3 FORMUL 4 CL CL 1- FORMUL 5 HOH *269(H2 O) HELIX 1 AA1 SER A 9 PHE A 14 5 6 HELIX 2 AA2 VAL A 63 SER A 67 5 5 HELIX 3 AA3 PHE A 73 ALA A 77 5 5 HELIX 4 AA4 HIS A 85 CYS A 90 1 6 HELIX 5 AA5 GLY A 137 LYS A 142 1 6 HELIX 6 AA6 TRP A 231 TYR A 238 5 8 SHEET 1 AA113 PHE A 144 GLN A 147 0 SHEET 2 AA113 GLY A 161 LYS A 172 -1 O LEU A 171 N VAL A 145 SHEET 3 AA113 ILE A 177 PRO A 188 -1 O GLN A 178 N TYR A 170 SHEET 4 AA113 TYR A 95 MET A 103 -1 N ARG A 102 O THR A 181 SHEET 5 AA113 GLY A 107 GLU A 118 -1 O LEU A 109 N LEU A 101 SHEET 6 AA113 CYS A 121 SER A 131 -1 O LYS A 125 N GLU A 114 SHEET 7 AA113 MET A 18 ILE A 28 1 N LYS A 21 O SER A 124 SHEET 8 AA113 LYS A 31 THR A 41 -1 O THR A 41 N MET A 18 SHEET 9 AA113 ARG A 46 CYS A 53 -1 O ASN A 48 N PHE A 40 SHEET 10 AA113 HIS A 218 GLY A 228 -1 O GLN A 221 N MET A 49 SHEET 11 AA113 HIS A 200 LYS A 209 -1 N ILE A 207 O THR A 222 SHEET 12 AA113 ASN A 150 HIS A 157 -1 N ILE A 154 O HIS A 200 SHEET 13 AA113 GLY A 161 LYS A 172 -1 O THR A 165 N LYS A 153 LINK C LEU A 69 N1 CRQ A 70 1555 1555 1.44 LINK C3 CRQ A 70 N PHE A 73 1555 1555 1.36 CISPEP 1 TYR A 16 PRO A 17 0 7.04 CISPEP 2 PHE A 91 PRO A 92 0 -1.84 SITE 1 AC1 9 LYS A 153 ARG A 163 GLN A 205 LEU A 224 SITE 2 AC1 9 TYR A 238 HOH A 417 HOH A 423 HOH A 474 SITE 3 AC1 9 HOH A 587 SITE 1 AC2 11 HIS A 50 ASP A 211 ASN A 213 LEU A 237 SITE 2 AC2 11 TYR A 238 LYS A 239 HOH A 426 HOH A 433 SITE 3 AC2 11 HOH A 437 HOH A 508 HOH A 536 SITE 1 AC3 3 TRP A 62 HOH A 461 HOH A 661 CRYST1 161.158 161.158 161.158 90.00 90.00 90.00 I 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006205 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006205 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006205 0.00000