HEADER CELL ADHESION 14-JUL-17 5Y04 TITLE CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN THE VINCULIN D1 DOMAIN AND TITLE 2 ALPHAE-CATENIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: VINCULIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-250; COMPND 5 SYNONYM: METAVINCULIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CATENIN ALPHA-1; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: UNP RESIDUES 276-375; COMPND 11 SYNONYM: 102 KDA CADHERIN-ASSOCIATED PROTEIN,ALPHA E-CATENIN,CAP102; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: VCL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 STAR (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET49B; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 13 ORGANISM_COMMON: MOUSE; SOURCE 14 ORGANISM_TAXID: 10090; SOURCE 15 GENE: CTNNA1, CATNA1; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21 STAR (DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET49B KEYWDS ADHERENS JUNCTION, CYTOSKELETON, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR Y.HIRANO,T.HAKOSHIMA REVDAT 3 27-MAR-24 5Y04 1 REMARK REVDAT 2 23-MAY-18 5Y04 1 JRNL REVDAT 1 28-MAR-18 5Y04 0 JRNL AUTH Y.HIRANO,Y.AMANO,S.YONEMURA,T.HAKOSHIMA JRNL TITL THE FORCE-SENSING DEVICE REGION OF ALPHA-CATENIN IS AN JRNL TITL 2 INTRINSICALLY DISORDERED SEGMENT IN THE ABSENCE OF JRNL TITL 3 INTRAMOLECULAR STABILIZATION OF THE AUTOINHIBITORY FORM JRNL REF GENES CELLS V. 23 370 2018 JRNL REFN ESSN 1365-2443 JRNL PMID 29542234 JRNL DOI 10.1111/GTC.12578 REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 10000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.248 REMARK 3 R VALUE (WORKING SET) : 0.247 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 501 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.92 REMARK 3 REFLECTION IN BIN (WORKING SET) : 443 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 61.35 REMARK 3 BIN R VALUE (WORKING SET) : 0.3360 REMARK 3 BIN FREE R VALUE SET COUNT : 19 REMARK 3 BIN FREE R VALUE : 0.4190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2227 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 6 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 94.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.28000 REMARK 3 B22 (A**2) : 1.03000 REMARK 3 B33 (A**2) : -5.31000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.053 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.392 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.293 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 34.624 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2245 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3043 ; 1.270 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 297 ; 2.675 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 81 ;42.862 ;25.062 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 390 ;16.828 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;18.673 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 386 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1612 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 250 REMARK 3 ORIGIN FOR THE GROUP (A): 10.6480 19.7423 17.1073 REMARK 3 T TENSOR REMARK 3 T11: 0.1808 T22: 0.2318 REMARK 3 T33: 0.1090 T12: -0.0362 REMARK 3 T13: 0.0140 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 0.3752 L22: 1.4917 REMARK 3 L33: 2.8440 L12: 0.5753 REMARK 3 L13: -0.8237 L23: -1.6834 REMARK 3 S TENSOR REMARK 3 S11: 0.1198 S12: -0.0218 S13: 0.1338 REMARK 3 S21: 0.1619 S22: 0.0051 S23: 0.0874 REMARK 3 S31: -0.0716 S32: -0.0066 S33: -0.1249 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 306 B 373 REMARK 3 ORIGIN FOR THE GROUP (A): 3.2801 27.4808 9.2323 REMARK 3 T TENSOR REMARK 3 T11: 0.3303 T22: 0.4669 REMARK 3 T33: 0.4111 T12: -0.0838 REMARK 3 T13: 0.1127 T23: 0.0896 REMARK 3 L TENSOR REMARK 3 L11: 0.4527 L22: 0.7985 REMARK 3 L33: 0.0159 L12: 0.0254 REMARK 3 L13: -0.0771 L23: -0.0325 REMARK 3 S TENSOR REMARK 3 S11: 0.1329 S12: 0.1965 S13: 0.4051 REMARK 3 S21: 0.1201 S22: -0.0683 S23: 0.1648 REMARK 3 S31: -0.0202 S32: -0.0556 S33: -0.0645 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 5Y04 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1300004446. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785, 0.9788, 0.9946 REMARK 200 MONOCHROMATOR : ROTATED-INCLINED DOUBLE-CRYSTAL REMARK 200 MONOCHROMATOR , SI (111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10287 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05200 REMARK 200 FOR THE DATA SET : 41.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.42500 REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM IMIDAZOLE, 0.5-0.7M POTASSIUM REMARK 280 TARTRATE, 0.35M SODIUM FORMATE, PH 8, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 27.40350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.91250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.40350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.91250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 PRO A 0 REMARK 465 GLU A 152 REMARK 465 LEU A 157 REMARK 465 THR A 214 REMARK 465 THR A 215 REMARK 465 LYS A 216 REMARK 465 ASN A 217 REMARK 465 SER A 218 REMARK 465 LYS A 219 REMARK 465 ASN A 220 REMARK 465 GLN A 221 REMARK 465 GLY A 222 REMARK 465 GLY B 274 REMARK 465 PRO B 275 REMARK 465 GLY B 276 REMARK 465 GLU B 277 REMARK 465 LEU B 278 REMARK 465 ALA B 279 REMARK 465 TYR B 280 REMARK 465 ALA B 281 REMARK 465 LEU B 282 REMARK 465 ASN B 283 REMARK 465 ASN B 284 REMARK 465 PHE B 285 REMARK 465 ASP B 286 REMARK 465 LYS B 287 REMARK 465 GLN B 288 REMARK 465 ILE B 289 REMARK 465 ILE B 290 REMARK 465 VAL B 291 REMARK 465 ASP B 292 REMARK 465 PRO B 293 REMARK 465 LEU B 294 REMARK 465 SER B 295 REMARK 465 PHE B 296 REMARK 465 SER B 297 REMARK 465 GLU B 298 REMARK 465 GLU B 299 REMARK 465 ARG B 300 REMARK 465 PHE B 301 REMARK 465 ARG B 302 REMARK 465 PRO B 303 REMARK 465 SER B 304 REMARK 465 LEU B 305 REMARK 465 CYS B 324 REMARK 465 THR B 325 REMARK 465 ARG B 326 REMARK 465 ASP B 327 REMARK 465 LYS B 374 REMARK 465 THR B 375 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 7 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 22 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 28 CG CD OE1 OE2 REMARK 470 GLU A 31 CG CD OE1 OE2 REMARK 470 LYS A 35 CG CD CE NZ REMARK 470 GLN A 48 CG CD OE1 NE2 REMARK 470 GLN A 63 CG CD OE1 NE2 REMARK 470 GLN A 68 CG CD OE1 NE2 REMARK 470 ILE A 69 CG1 CG2 CD1 REMARK 470 ARG A 72 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 93 CG CD OE1 NE2 REMARK 470 ARG A 105 CG CD NE CZ NH1 NH2 REMARK 470 THR A 153 OG1 CG2 REMARK 470 GLU A 155 CG CD OE1 OE2 REMARK 470 LYS A 162 CG CD CE NZ REMARK 470 ASN A 163 CG OD1 ND2 REMARK 470 LYS A 173 CG CD CE NZ REMARK 470 GLU A 177 CG CD OE1 OE2 REMARK 470 GLU A 181 CG CD OE1 OE2 REMARK 470 GLU A 186 CG CD OE1 OE2 REMARK 470 LYS A 210 CG CD CE NZ REMARK 470 GLU A 235 CG CD OE1 OE2 REMARK 470 GLU B 306 CG CD OE1 OE2 REMARK 470 GLU B 307 CG CD OE1 OE2 REMARK 470 ARG B 308 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 310 CG CD OE1 OE2 REMARK 470 ILE B 312 CG1 CG2 CD1 REMARK 470 ARG B 332 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 354 CG OD1 ND2 REMARK 470 LYS B 358 CG CD CE NZ REMARK 470 SER B 361 OG REMARK 470 LYS B 373 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU A 143 OG1 THR A 146 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 147 42.58 -89.19 REMARK 500 ILE A 211 -5.75 -54.11 REMARK 500 ALA B 316 46.23 -84.87 REMARK 500 ALA B 317 63.72 64.38 REMARK 500 SER B 322 -129.41 55.22 REMARK 500 THR B 372 -87.16 -127.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3W3R RELATED DB: PDB DBREF 5Y04 A 1 250 UNP Q64727 VINC_MOUSE 1 250 DBREF 5Y04 B 276 375 UNP P26231 CTNA1_MOUSE 276 375 SEQADV 5Y04 GLY A -1 UNP Q64727 EXPRESSION TAG SEQADV 5Y04 PRO A 0 UNP Q64727 EXPRESSION TAG SEQADV 5Y04 GLY B 274 UNP P26231 EXPRESSION TAG SEQADV 5Y04 PRO B 275 UNP P26231 EXPRESSION TAG SEQRES 1 A 252 GLY PRO MET PRO VAL PHE HIS THR ARG THR ILE GLU SER SEQRES 2 A 252 ILE LEU GLU PRO VAL ALA GLN GLN ILE SER HIS LEU VAL SEQRES 3 A 252 ILE MET HIS GLU GLU GLY GLU VAL ASP GLY LYS ALA ILE SEQRES 4 A 252 PRO ASP LEU THR ALA PRO VAL ALA ALA VAL GLN ALA ALA SEQRES 5 A 252 VAL SER ASN LEU VAL ARG VAL GLY LYS GLU THR VAL GLN SEQRES 6 A 252 THR THR GLU ASP GLN ILE LEU LYS ARG ASP MET PRO PRO SEQRES 7 A 252 ALA PHE ILE LYS VAL GLU ASN ALA CYS THR LYS LEU VAL SEQRES 8 A 252 GLN ALA ALA GLN MET LEU GLN SER ASP PRO TYR SER VAL SEQRES 9 A 252 PRO ALA ARG ASP TYR LEU ILE ASP GLY SER ARG GLY ILE SEQRES 10 A 252 LEU SER GLY THR SER ASP LEU LEU LEU THR PHE ASP GLU SEQRES 11 A 252 ALA GLU VAL ARG LYS ILE ILE ARG VAL CYS LYS GLY ILE SEQRES 12 A 252 LEU GLU TYR LEU THR VAL ALA GLU VAL VAL GLU THR MET SEQRES 13 A 252 GLU ASP LEU VAL THR TYR THR LYS ASN LEU GLY PRO GLY SEQRES 14 A 252 MET THR LYS MET ALA LYS MET ILE ASP GLU ARG GLN GLN SEQRES 15 A 252 GLU LEU THR HIS GLN GLU HIS ARG VAL MET LEU VAL ASN SEQRES 16 A 252 SER MET ASN THR VAL LYS GLU LEU LEU PRO VAL LEU ILE SEQRES 17 A 252 SER ALA MET LYS ILE PHE VAL THR THR LYS ASN SER LYS SEQRES 18 A 252 ASN GLN GLY ILE GLU GLU ALA LEU LYS ASN ARG ASN PHE SEQRES 19 A 252 THR VAL GLU LYS MET SER ALA GLU ILE ASN GLU ILE ILE SEQRES 20 A 252 ARG VAL LEU GLN LEU SEQRES 1 B 102 GLY PRO GLY GLU LEU ALA TYR ALA LEU ASN ASN PHE ASP SEQRES 2 B 102 LYS GLN ILE ILE VAL ASP PRO LEU SER PHE SER GLU GLU SEQRES 3 B 102 ARG PHE ARG PRO SER LEU GLU GLU ARG LEU GLU SER ILE SEQRES 4 B 102 ILE SER GLY ALA ALA LEU MET ALA ASP SER SER CYS THR SEQRES 5 B 102 ARG ASP ASP ARG ARG GLU ARG ILE VAL ALA GLU CYS ASN SEQRES 6 B 102 ALA VAL ARG GLN ALA LEU GLN ASP LEU LEU SER GLU TYR SEQRES 7 B 102 MET GLY ASN ALA GLY ARG LYS GLU ARG SER ASP ALA LEU SEQRES 8 B 102 ASN SER ALA ILE ASP LYS MET THR LYS LYS THR FORMUL 3 HOH *6(H2 O) HELIX 1 AA1 THR A 6 GLY A 30 1 25 HELIX 2 AA2 LEU A 40 THR A 65 1 26 HELIX 3 AA3 ASP A 67 ASP A 98 1 32 HELIX 4 AA4 PRO A 103 VAL A 147 1 45 HELIX 5 AA5 THR A 159 GLN A 180 1 22 HELIX 6 AA6 HIS A 184 ILE A 211 1 28 HELIX 7 AA7 GLU A 224 LEU A 250 1 27 HELIX 8 AA8 ARG B 308 GLY B 315 1 8 HELIX 9 AA9 ARG B 329 GLY B 353 1 25 HELIX 10 AB1 GLU B 359 ASP B 369 1 11 CRYST1 54.807 73.825 111.485 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018246 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013546 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008970 0.00000