HEADER TRANSFERASE 25-JUL-17 5Y07 TITLE CRYSTAL STRUCTURE OF ADENINE PHOSPHORIBOSYLTRANSFERASE FROM YERSINIA TITLE 2 PSEUDOTUBERCULOSIS WITH PRPP. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENINE PHOSPHORIBOSYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: APRT; COMPND 5 EC: 2.4.2.7; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PSEUDOTUBERCULOSIS IP 32953; SOURCE 3 ORGANISM_TAXID: 273123; SOURCE 4 STRAIN: IP32953; SOURCE 5 GENE: APT, YPTB0991; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: LIC-PET30A KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.C.PAVITHRA,U.A.RAMAGOPAL REVDAT 3 22-NOV-23 5Y07 1 HETSYN REVDAT 2 29-JUL-20 5Y07 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE REVDAT 1 01-AUG-18 5Y07 0 JRNL AUTH U.A.RAMAGOPAL,G.C.PAVITHRA JRNL TITL CRYSTAL STRUCTURE OF ADENINE PHOSPHORIBOSYLTRANSFERASE FROM JRNL TITL 2 YERSINIA PSEUDOTUBERCULOSIS WITH PRPP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.07 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.07 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 3 NUMBER OF REFLECTIONS : 20856 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1140 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.07 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.13 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1365 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.1920 REMARK 3 BIN FREE R VALUE SET COUNT : 79 REMARK 3 BIN FREE R VALUE : 0.2720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2716 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 71 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.41000 REMARK 3 B22 (A**2) : -0.03000 REMARK 3 B33 (A**2) : -0.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.221 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.187 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.123 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.198 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2832 ; 0.022 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2693 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3859 ; 2.276 ; 2.008 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6258 ; 1.068 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 361 ; 7.146 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 108 ;34.818 ;24.259 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 474 ;14.322 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;21.509 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 458 ; 0.119 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3084 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 530 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 203 REMARK 3 ORIGIN FOR THE GROUP (A): 8.8904 -16.2970 25.3394 REMARK 3 T TENSOR REMARK 3 T11: 0.0159 T22: 0.0199 REMARK 3 T33: 0.0417 T12: 0.0132 REMARK 3 T13: -0.0098 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.9104 L22: 0.6142 REMARK 3 L33: 0.3735 L12: 0.2357 REMARK 3 L13: -0.1543 L23: 0.1247 REMARK 3 S TENSOR REMARK 3 S11: -0.0370 S12: -0.0466 S13: -0.0834 REMARK 3 S21: 0.0431 S22: -0.0134 S23: -0.0378 REMARK 3 S31: 0.0417 S32: 0.0606 S33: 0.0504 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 8 B 203 REMARK 3 ORIGIN FOR THE GROUP (A): -0.2025 -0.3911 12.8498 REMARK 3 T TENSOR REMARK 3 T11: 0.0136 T22: 0.0411 REMARK 3 T33: 0.0468 T12: 0.0018 REMARK 3 T13: -0.0036 T23: 0.0382 REMARK 3 L TENSOR REMARK 3 L11: 0.7909 L22: 0.6611 REMARK 3 L33: 0.3412 L12: -0.1758 REMARK 3 L13: -0.0346 L23: 0.3786 REMARK 3 S TENSOR REMARK 3 S11: 0.0155 S12: 0.1792 S13: 0.1614 REMARK 3 S21: -0.0203 S22: -0.0254 S23: 0.0358 REMARK 3 S31: 0.0093 S32: 0.0011 S33: 0.0099 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5Y07 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1300004447. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5403 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22014 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.070 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.07 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.14100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 4MB6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG3350, 0.1M TRIS-HCL PH 8.5, REMARK 280 0.2M SODIUM ACETATE WITH 5MM PRPP, MAGNESIUM CHLORIDE, PH 7.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.14600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -76.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 VAL A 3 REMARK 465 SER A 4 REMARK 465 ALA A 5 REMARK 465 SER A 6 REMARK 465 LYS A 7 REMARK 465 HIS A 187 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 VAL B 3 REMARK 465 SER B 4 REMARK 465 ALA B 5 REMARK 465 SER B 6 REMARK 465 LYS B 7 REMARK 465 GLY B 186 REMARK 465 HIS B 187 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 10 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 70 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ASP A 118 CB - CG - OD1 ANGL. DEV. = -6.2 DEGREES REMARK 500 ASP A 185 CB - CG - OD1 ANGL. DEV. = 6.9 DEGREES REMARK 500 ASP A 185 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG B 70 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG B 70 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 10 -56.35 -27.58 REMARK 500 ALA A 134 -93.26 -122.85 REMARK 500 ALA B 134 -93.95 -108.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 202 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 117 O REMARK 620 2 ILE A 120 O 90.1 REMARK 620 3 HOH A 307 O 128.0 85.9 REMARK 620 4 HOH A 336 O 113.7 97.1 118.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRP A 201 O1 REMARK 620 2 PRP A 201 O2 72.5 REMARK 620 3 PRP A 201 O3 83.8 76.5 REMARK 620 4 PRP A 201 O2B 100.0 95.5 169.9 REMARK 620 5 HOH A 304 O 163.4 93.0 84.9 89.3 REMARK 620 6 HOH A 320 O 91.5 160.8 91.4 97.9 100.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 202 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 117 O REMARK 620 2 ILE B 120 O 90.6 REMARK 620 3 HOH B 304 O 133.3 85.7 REMARK 620 4 HOH B 334 O 83.5 166.3 89.3 REMARK 620 5 HOH B 335 O 113.8 90.2 112.7 103.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRP B 201 O1 REMARK 620 2 PRP B 201 O2 75.9 REMARK 620 3 PRP B 201 O3 85.7 75.8 REMARK 620 4 PRP B 201 O3B 88.5 91.0 166.6 REMARK 620 5 HOH B 301 O 171.0 95.1 91.3 92.6 REMARK 620 6 HOH B 323 O 85.9 158.1 91.0 100.7 102.7 REMARK 620 N 1 2 3 4 5 DBREF 5Y07 A 1 187 UNP Q66DQ2 APT_YERPS 1 187 DBREF 5Y07 B 1 187 UNP Q66DQ2 APT_YERPS 1 187 SEQRES 1 A 187 MET THR VAL SER ALA SER LYS THR ALA GLN GLN LEU LYS SEQRES 2 A 187 TYR ILE LYS ASP SER ILE LYS THR ILE PRO ASP TYR PRO SEQRES 3 A 187 LYS ALA GLY ILE LEU PHE ARG ASP VAL THR SER LEU LEU SEQRES 4 A 187 GLU ASN PRO LYS ALA TYR SER ALA SER ILE GLU LEU LEU SEQRES 5 A 187 SER GLU HIS TYR SER GLU SER GLY VAL THR LYS VAL VAL SEQRES 6 A 187 GLY THR GLU ALA ARG GLY PHE LEU PHE GLY ALA PRO VAL SEQRES 7 A 187 ALA LEU ALA LEU GLY VAL GLY PHE VAL PRO VAL ARG LYS SEQRES 8 A 187 PRO GLY LYS LEU PRO ARG GLU THR ILE SER GLU SER TYR SEQRES 9 A 187 GLU LEU GLU TYR GLY THR ASP THR LEU GLU ILE HIS THR SEQRES 10 A 187 ASP SER ILE GLN PRO GLY ASP LYS VAL LEU VAL VAL ASP SEQRES 11 A 187 ASP LEU LEU ALA THR GLY GLY THR ILE GLU ALA THR VAL SEQRES 12 A 187 LYS LEU ILE ARG ARG LEU GLY GLY GLU VAL VAL HIS ALA SEQRES 13 A 187 ALA PHE ILE ILE ASN LEU PRO GLU LEU GLY GLY GLU ALA SEQRES 14 A 187 ARG LEU THR GLN GLN GLY ILE HIS CYS TYR SER LEU VAL SEQRES 15 A 187 SER PHE ASP GLY HIS SEQRES 1 B 187 MET THR VAL SER ALA SER LYS THR ALA GLN GLN LEU LYS SEQRES 2 B 187 TYR ILE LYS ASP SER ILE LYS THR ILE PRO ASP TYR PRO SEQRES 3 B 187 LYS ALA GLY ILE LEU PHE ARG ASP VAL THR SER LEU LEU SEQRES 4 B 187 GLU ASN PRO LYS ALA TYR SER ALA SER ILE GLU LEU LEU SEQRES 5 B 187 SER GLU HIS TYR SER GLU SER GLY VAL THR LYS VAL VAL SEQRES 6 B 187 GLY THR GLU ALA ARG GLY PHE LEU PHE GLY ALA PRO VAL SEQRES 7 B 187 ALA LEU ALA LEU GLY VAL GLY PHE VAL PRO VAL ARG LYS SEQRES 8 B 187 PRO GLY LYS LEU PRO ARG GLU THR ILE SER GLU SER TYR SEQRES 9 B 187 GLU LEU GLU TYR GLY THR ASP THR LEU GLU ILE HIS THR SEQRES 10 B 187 ASP SER ILE GLN PRO GLY ASP LYS VAL LEU VAL VAL ASP SEQRES 11 B 187 ASP LEU LEU ALA THR GLY GLY THR ILE GLU ALA THR VAL SEQRES 12 B 187 LYS LEU ILE ARG ARG LEU GLY GLY GLU VAL VAL HIS ALA SEQRES 13 B 187 ALA PHE ILE ILE ASN LEU PRO GLU LEU GLY GLY GLU ALA SEQRES 14 B 187 ARG LEU THR GLN GLN GLY ILE HIS CYS TYR SER LEU VAL SEQRES 15 B 187 SER PHE ASP GLY HIS HET PRP A 201 22 HET NA A 202 1 HET MG A 203 1 HET PRP B 201 22 HET NA B 202 1 HET MG B 203 1 HETNAM PRP 1-O-PYROPHOSPHONO-5-O-PHOSPHONO-ALPHA-D-RIBOFURANOSE HETNAM NA SODIUM ION HETNAM MG MAGNESIUM ION HETSYN PRP ALPHA-PHOSPHORIBOSYLPYROPHOSPHORIC ACID; 1-O- HETSYN 2 PRP PYROPHOSPHONO-5-O-PHOSPHONO-ALPHA-D-RIBOSE; 1-O- HETSYN 3 PRP PYROPHOSPHONO-5-O-PHOSPHONO-D-RIBOSE; 1-O- HETSYN 4 PRP PYROPHOSPHONO-5-O-PHOSPHONO-RIBOSE FORMUL 3 PRP 2(C5 H13 O14 P3) FORMUL 4 NA 2(NA 1+) FORMUL 5 MG 2(MG 2+) FORMUL 9 HOH *71(H2 O) HELIX 1 AA1 THR A 8 SER A 18 1 11 HELIX 2 AA2 VAL A 35 GLU A 40 1 6 HELIX 3 AA3 ASN A 41 TYR A 56 1 16 HELIX 4 AA4 GLY A 71 GLY A 83 1 13 HELIX 5 AA5 ASP A 118 ILE A 120 5 3 HELIX 6 AA6 GLY A 136 LEU A 149 1 14 HELIX 7 AA7 PRO A 163 LEU A 165 5 3 HELIX 8 AA8 GLY A 166 GLN A 174 1 9 HELIX 9 AA9 ALA B 9 ILE B 19 1 11 HELIX 10 AB1 VAL B 35 GLU B 40 1 6 HELIX 11 AB2 ASN B 41 TYR B 56 1 16 HELIX 12 AB3 GLY B 71 GLY B 83 1 13 HELIX 13 AB4 ASP B 118 ILE B 120 5 3 HELIX 14 AB5 GLY B 136 LEU B 149 1 14 HELIX 15 AB6 PRO B 163 LEU B 165 5 3 HELIX 16 AB7 GLY B 166 GLN B 174 1 9 SHEET 1 AA1 2 LYS A 20 ILE A 22 0 SHEET 2 AA1 2 PHE A 32 ASP A 34 -1 O ASP A 34 N LYS A 20 SHEET 1 AA2 5 GLY A 85 VAL A 89 0 SHEET 2 AA2 5 LYS A 63 THR A 67 1 N VAL A 64 O VAL A 87 SHEET 3 AA2 5 LYS A 125 LEU A 133 1 O VAL A 129 N VAL A 65 SHEET 4 AA2 5 GLU A 152 ASN A 161 1 O GLU A 152 N VAL A 126 SHEET 5 AA2 5 HIS A 177 SER A 183 1 O HIS A 177 N VAL A 154 SHEET 1 AA3 2 THR A 99 GLU A 105 0 SHEET 2 AA3 2 THR A 110 HIS A 116 -1 O ASP A 111 N TYR A 104 SHEET 1 AA4 2 LYS B 20 PRO B 23 0 SHEET 2 AA4 2 LEU B 31 ASP B 34 -1 O PHE B 32 N ILE B 22 SHEET 1 AA5 5 GLY B 85 VAL B 89 0 SHEET 2 AA5 5 LYS B 63 THR B 67 1 N VAL B 64 O VAL B 87 SHEET 3 AA5 5 LYS B 125 LEU B 133 1 O VAL B 129 N VAL B 65 SHEET 4 AA5 5 GLU B 152 ASN B 161 1 O GLU B 152 N VAL B 126 SHEET 5 AA5 5 HIS B 177 SER B 183 1 O HIS B 177 N VAL B 154 SHEET 1 AA6 2 THR B 99 LEU B 106 0 SHEET 2 AA6 2 GLY B 109 HIS B 116 -1 O ASP B 111 N TYR B 104 LINK O THR A 117 NA NA A 202 1555 1555 2.37 LINK O ILE A 120 NA NA A 202 1555 1555 2.28 LINK O1 PRP A 201 MG MG A 203 1555 1555 2.13 LINK O2 PRP A 201 MG MG A 203 1555 1555 2.23 LINK O3 PRP A 201 MG MG A 203 1555 1555 2.22 LINK O2B PRP A 201 MG MG A 203 1555 1555 2.03 LINK NA NA A 202 O HOH A 307 1555 1555 2.46 LINK NA NA A 202 O HOH A 336 1555 1555 1.99 LINK MG MG A 203 O HOH A 304 1555 1555 2.18 LINK MG MG A 203 O HOH A 320 1555 1555 2.02 LINK O THR B 117 NA NA B 202 1555 1555 2.38 LINK O ILE B 120 NA NA B 202 1555 1555 2.35 LINK O1 PRP B 201 MG MG B 203 1555 1555 2.44 LINK O2 PRP B 201 MG MG B 203 1555 1555 2.28 LINK O3 PRP B 201 MG MG B 203 1555 1555 2.14 LINK O3B PRP B 201 MG MG B 203 1555 1555 2.07 LINK NA NA B 202 O HOH B 304 1555 1555 2.37 LINK NA NA B 202 O HOH B 334 1555 1555 2.29 LINK NA NA B 202 O HOH B 335 1555 1555 2.09 LINK MG MG B 203 O HOH B 301 1555 1555 2.02 LINK MG MG B 203 O HOH B 323 1555 1555 1.85 CISPEP 1 TYR A 25 PRO A 26 0 -3.31 CISPEP 2 GLU A 68 ALA A 69 0 -8.38 CISPEP 3 TYR B 25 PRO B 26 0 -4.55 CISPEP 4 GLU B 68 ALA B 69 0 -1.97 CRYST1 48.301 86.292 48.553 90.00 105.87 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020704 0.000000 0.005884 0.00000 SCALE2 0.000000 0.011589 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021412 0.00000