HEADER IMMUNE SYSTEM/VIRAL SYSTEM 19-JUL-17 5Y11 TITLE SFTSV GN WITH NEUTRALIZING ANTIBODY MAB4-5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAB 4-5 HEAVY CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: MAB 4-5 LIGHT CHAIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: MEMBRANE GLYCOPROTEIN POLYPROTEIN; COMPND 11 CHAIN: C; COMPND 12 FRAGMENT: UNP RESIDUES 20-340; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: MAMMALIA; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 40674; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: MAMMALIA; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 40674; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: SEVERE FEVER WITH THROMBOCYTOPENIA VIRUS; SOURCE 13 ORGANISM_TAXID: 1003835; SOURCE 14 EXPRESSION_SYSTEM: BACULOVIRUS EXPRESSION VECTOR PFASTBAC1-HM; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 274590 KEYWDS SFTSV, GN, NEUTRALIZING ANTIBODY, PHLEBOVIRUS, VIRAL PROTEIN, IMMUNE KEYWDS 2 SYSTEM-VIRAL SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.WU,F.GAO,J.X.QI,Y.CHAI,G.F.GAO REVDAT 4 13-NOV-24 5Y11 1 HETSYN REVDAT 3 29-JUL-20 5Y11 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 20-SEP-17 5Y11 1 JRNL REVDAT 1 13-SEP-17 5Y11 0 JRNL AUTH Y.WU,Y.H.ZHU,F.GAO,Y.J.JIAO,B.O.OLADEJO,Y.CHAI,Y.H.BI,S.LU, JRNL AUTH 2 M.Q.DONG,C.ZHANG,G.M.HUANG,G.WONG,N.LI,Y.F.ZHANG,Y.LI, JRNL AUTH 3 W.H.FENG,Y.SHI,M.F.LIANG,R.G.ZHANG,J.X.QI,G.F.GAO JRNL TITL STRUCTURES OF PHLEBOVIRUS GLYCOPROTEIN GN AND IDENTIFICATION JRNL TITL 2 OF A NEUTRALIZING ANTIBODY EPITOPE JRNL REF PROC. NATL. ACAD. SCI. V. 114 E7564 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28827346 JRNL DOI 10.1073/PNAS.1705176114 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 56449 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2865 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.7594 - 5.6845 0.99 2861 161 0.1886 0.2154 REMARK 3 2 5.6845 - 4.5141 1.00 2789 129 0.1438 0.1478 REMARK 3 3 4.5141 - 3.9441 1.00 2746 138 0.1298 0.1691 REMARK 3 4 3.9441 - 3.5838 1.00 2724 133 0.1490 0.1669 REMARK 3 5 3.5838 - 3.3271 1.00 2693 161 0.1554 0.1964 REMARK 3 6 3.3271 - 3.1310 1.00 2726 131 0.1679 0.2102 REMARK 3 7 3.1310 - 2.9743 1.00 2723 129 0.1792 0.2041 REMARK 3 8 2.9743 - 2.8448 1.00 2672 149 0.1840 0.2303 REMARK 3 9 2.8448 - 2.7354 1.00 2662 157 0.1853 0.2264 REMARK 3 10 2.7354 - 2.6410 1.00 2687 154 0.1764 0.2467 REMARK 3 11 2.6410 - 2.5584 1.00 2685 138 0.1852 0.2199 REMARK 3 12 2.5584 - 2.4853 1.00 2653 160 0.1809 0.2734 REMARK 3 13 2.4853 - 2.4199 1.00 2675 127 0.1789 0.2380 REMARK 3 14 2.4199 - 2.3609 1.00 2669 149 0.1824 0.2311 REMARK 3 15 2.3609 - 2.3072 1.00 2684 135 0.1829 0.2181 REMARK 3 16 2.3072 - 2.2581 1.00 2690 130 0.1913 0.2291 REMARK 3 17 2.2581 - 2.2129 1.00 2656 141 0.2021 0.2628 REMARK 3 18 2.2129 - 2.1712 0.99 2613 153 0.1866 0.2713 REMARK 3 19 2.1712 - 2.1324 0.97 2574 149 0.1862 0.2460 REMARK 3 20 2.1324 - 2.0963 0.91 2402 141 0.1933 0.2606 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 6003 REMARK 3 ANGLE : 1.014 8151 REMARK 3 CHIRALITY : 0.059 887 REMARK 3 PLANARITY : 0.005 1040 REMARK 3 DIHEDRAL : 5.812 3557 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 20.4729 -26.9557 -16.9957 REMARK 3 T TENSOR REMARK 3 T11: 0.1709 T22: 0.1937 REMARK 3 T33: 0.1668 T12: -0.0073 REMARK 3 T13: 0.0033 T23: 0.0208 REMARK 3 L TENSOR REMARK 3 L11: 0.1744 L22: 0.5986 REMARK 3 L33: 0.0933 L12: -0.2003 REMARK 3 L13: -0.0465 L23: 0.1958 REMARK 3 S TENSOR REMARK 3 S11: -0.0047 S12: 0.0175 S13: 0.0337 REMARK 3 S21: 0.0079 S22: 0.0162 S23: -0.0255 REMARK 3 S31: -0.0021 S32: 0.0070 S33: -0.0109 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5Y11 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1300004489. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97905 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56517 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 9.000 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.28100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.3M POTASSIUM/SODIUM TARTRATE, 20% REMARK 280 (W/V) PEG 3350, 0.1M BIS TRIS PROPANE PH 7.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.30250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.01550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.59700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.01550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.30250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.59700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 41.30250 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -51.59700 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 138 REMARK 465 LYS A 139 REMARK 465 SER A 140 REMARK 465 THR A 141 REMARK 465 SER A 142 REMARK 465 GLY A 143 REMARK 465 SER A 225 REMARK 465 CYS A 226 REMARK 465 ASP A 227 REMARK 465 LYS A 228 REMARK 465 SER B 216 REMARK 465 HIS B 217 REMARK 465 HIS B 218 REMARK 465 HIS B 219 REMARK 465 HIS B 220 REMARK 465 HIS B 221 REMARK 465 HIS B 222 REMARK 465 ASP C 20 REMARK 465 SER C 21 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 701 O HOH C 711 1.87 REMARK 500 O TYR A 60 O HOH A 301 1.96 REMARK 500 NH1 ARG A 59 O HOH A 302 2.09 REMARK 500 ND2 ASN C 63 O5 NAG E 1 2.11 REMARK 500 O HOH C 961 O HOH C 969 2.11 REMARK 500 O HOH C 717 O HOH C 982 2.12 REMARK 500 O HOH C 740 O HOH C 741 2.13 REMARK 500 O HOH C 841 O HOH C 998 2.14 REMARK 500 O HOH B 354 O HOH B 411 2.17 REMARK 500 O HOH C 957 O HOH C 973 2.18 REMARK 500 OE1 GLU B 81 O HOH B 301 2.18 REMARK 500 O HOH C 755 O HOH C 976 2.18 REMARK 500 O HOH C 949 O HOH C 984 2.18 REMARK 500 O HOH C 927 O HOH C 992 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 15 -5.27 70.98 REMARK 500 ASP A 154 61.70 61.43 REMARK 500 PRO A 223 170.69 -57.82 REMARK 500 SER B 30 -138.62 57.98 REMARK 500 ALA B 51 -35.76 72.38 REMARK 500 ASN B 139 64.22 61.24 REMARK 500 ASP B 152 72.71 12.29 REMARK 500 ASN B 153 -7.96 74.19 REMARK 500 ILE C 25 -51.89 -132.30 REMARK 500 ARG C 74 -47.43 70.37 REMARK 500 CYS C 206 -65.90 -101.50 REMARK 500 GLU C 217 -77.42 -103.43 REMARK 500 HIS C 234 -150.38 -116.27 REMARK 500 ARG C 241 -85.64 -92.14 REMARK 500 GLU C 300 126.18 48.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL B 151 ASP B 152 -148.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 451 DISTANCE = 6.80 ANGSTROMS REMARK 525 HOH C1022 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH C1023 DISTANCE = 6.70 ANGSTROMS REMARK 525 HOH C1024 DISTANCE = 7.50 ANGSTROMS DBREF 5Y11 A 0 228 PDB 5Y11 5Y11 0 228 DBREF 5Y11 B 1 222 PDB 5Y11 5Y11 1 222 DBREF1 5Y11 C 20 340 UNP A0A1L2DAC8_9VIRU DBREF2 5Y11 C A0A1L2DAC8 20 340 SEQRES 1 A 229 SER GLU VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS SEQRES 2 A 229 GLU PRO ARG GLU SER LEU LYS ILE SER CYS LYS GLY SER SEQRES 3 A 229 GLY TYR SER PHE THR ASN TYR TRP ILE GLY TRP VAL ARG SEQRES 4 A 229 GLN MET PRO GLY LYS GLY LEU GLU TRP MET GLY ILE ILE SEQRES 5 A 229 PHE PRO GLY ASP SER ASP THR ARG TYR SER PRO SER PHE SEQRES 6 A 229 GLN GLY GLN VAL THR ILE SER ALA ASP LYS SER ILE ASN SEQRES 7 A 229 THR ALA TYR LEU GLN TRP SER SER LEU LYS ALA SER ASP SEQRES 8 A 229 THR ALA ILE TYR TYR CYS ALA ARG LEU LYS ARG ARG GLY SEQRES 9 A 229 PHE SER GLY GLU GLY TYR PHE ASP TYR TRP GLY GLN GLY SEQRES 10 A 229 THR LEU VAL THR VAL SER SER ALA SER THR LYS GLY PRO SEQRES 11 A 229 SER VAL PHE PRO LEU ALA PRO SER SER LYS SER THR SER SEQRES 12 A 229 GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR SEQRES 13 A 229 PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA SEQRES 14 A 229 LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SEQRES 15 A 229 SER SER GLY LEU TYR SER LEU SER SER VAL VAL THR VAL SEQRES 16 A 229 PRO SER SER SER LEU GLY THR GLN THR TYR ILE CYS ASN SEQRES 17 A 229 VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS ARG SEQRES 18 A 229 VAL GLU PRO LYS SER CYS ASP LYS SEQRES 1 B 222 GLU LEU THR LEU THR GLN SER PRO ALA THR LEU SER VAL SEQRES 2 B 222 SER PRO GLY GLU ARG ALA THR LEU SER CYS ARG ALA SER SEQRES 3 B 222 GLN SER VAL SER SER ASN LEU ALA TRP TYR GLN GLN LYS SEQRES 4 B 222 PRO GLY GLN ALA PRO ARG LEU LEU ILE TYR GLY ALA SER SEQRES 5 B 222 THR ARG ALA THR GLY ILE PRO ALA ARG PHE SER GLY SER SEQRES 6 B 222 GLY SER GLY THR GLU PHE THR LEU THR ILE SER SER LEU SEQRES 7 B 222 GLN SER GLU ASP PHE ALA VAL TYR TYR CYS GLN GLN TYR SEQRES 8 B 222 ASN ASN TRP PRO PRO TYR THR PHE GLY GLN GLY THR LYS SEQRES 9 B 222 VAL GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE SEQRES 10 B 222 ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR SEQRES 11 B 222 ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG SEQRES 12 B 222 GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SEQRES 13 B 222 SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER SEQRES 14 B 222 LYS ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SEQRES 15 B 222 SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS SEQRES 16 B 222 GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SEQRES 17 B 222 SER PHE ASN ARG GLY GLU CYS SER HIS HIS HIS HIS HIS SEQRES 18 B 222 HIS SEQRES 1 C 321 ASP SER GLY PRO ILE ILE CYS ALA GLY PRO ILE HIS SER SEQRES 2 C 321 ASN LYS SER ALA ASP ILE PRO HIS LEU LEU GLY TYR SER SEQRES 3 C 321 GLU LYS ILE CYS GLN ILE ASP ARG LEU ILE HIS VAL SER SEQRES 4 C 321 SER TRP LEU ARG ASN HIS SER GLN PHE GLN GLY TYR VAL SEQRES 5 C 321 GLY GLN ARG GLY GLY ARG SER GLN VAL SER TYR TYR PRO SEQRES 6 C 321 ALA GLU ASN SER TYR SER ARG TRP SER GLY LEU LEU SER SEQRES 7 C 321 PRO CYS ASP ALA ASP TRP LEU GLY MET LEU VAL VAL LYS SEQRES 8 C 321 LYS ALA LYS GLY SER ASP MET ILE VAL PRO GLY PRO SER SEQRES 9 C 321 TYR LYS GLY LYS VAL PHE PHE GLU ARG PRO THR PHE ASP SEQRES 10 C 321 GLY TYR VAL GLY TRP GLY CYS GLY SER GLY LYS SER ARG SEQRES 11 C 321 THR GLU SER GLY GLU LEU CYS SER SER ASP SER GLY THR SEQRES 12 C 321 SER SER GLY LEU LEU PRO SER ASP ARG VAL LEU TRP ILE SEQRES 13 C 321 GLY ASP VAL ALA CYS GLN PRO MET THR PRO ILE PRO GLU SEQRES 14 C 321 GLU THR PHE LEU GLU LEU LYS SER PHE SER GLN SER GLU SEQRES 15 C 321 PHE PRO ASP ILE CYS LYS ILE ASP GLY ILE VAL PHE ASN SEQRES 16 C 321 GLN CYS GLU GLY GLU SER LEU PRO GLN PRO PHE ASP VAL SEQRES 17 C 321 ALA TRP MET ASP VAL GLY HIS SER HIS LYS ILE ILE MET SEQRES 18 C 321 ARG GLU HIS LYS THR LYS TRP VAL GLN GLU SER SER SER SEQRES 19 C 321 LYS ASP PHE VAL CYS TYR LYS GLU GLY THR GLY PRO CYS SEQRES 20 C 321 SER GLU SER GLU GLU LYS THR CYS LYS THR SER GLY SER SEQRES 21 C 321 CYS ARG GLY ASP MET GLN PHE CYS LYS VAL ALA GLY CYS SEQRES 22 C 321 GLU HIS GLY GLU GLU ALA SER GLU ALA LYS CYS ARG CYS SEQRES 23 C 321 SER LEU VAL HIS LYS PRO GLY GLU VAL VAL VAL SER TYR SEQRES 24 C 321 GLY GLY MET ARG VAL ARG PRO LYS CYS TYR GLY PHE SER SEQRES 25 C 321 ARG MET MET ALA THR LEU GLU VAL ASN HET NAG D 1 14 HET NAG D 2 14 HET NAG E 1 14 HET NAG E 2 14 HET MAN E 3 11 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 4 NAG 4(C8 H15 N O6) FORMUL 5 MAN C6 H12 O6 FORMUL 6 HOH *637(H2 O) HELIX 1 AA1 SER A 28 TYR A 32 5 5 HELIX 2 AA2 LYS A 87 THR A 91 5 5 HELIX 3 AA3 SER A 166 ALA A 168 5 3 HELIX 4 AA4 SER A 197 LEU A 199 5 3 HELIX 5 AA5 LYS A 211 ASN A 214 5 4 HELIX 6 AA6 GLN B 79 PHE B 83 5 5 HELIX 7 AA7 SER B 122 LYS B 127 1 6 HELIX 8 AA8 LYS B 184 LYS B 189 1 6 HELIX 9 AA9 GLY C 43 ARG C 53 1 11 HELIX 10 AB1 LEU C 54 GLN C 66 1 13 HELIX 11 AB2 GLY C 76 VAL C 80 5 5 HELIX 12 AB3 SER C 88 TRP C 92 5 5 HELIX 13 AB4 SER C 97 LEU C 104 1 8 HELIX 14 AB5 SER C 160 SER C 163 5 4 HELIX 15 AB6 PRO C 187 PHE C 202 1 16 HELIX 16 AB7 SER C 252 LYS C 254 5 3 HELIX 17 AB8 SER C 267 GLY C 278 1 12 HELIX 18 AB9 ASP C 283 GLY C 291 1 9 SHEET 1 AA1 4 GLN A 3 GLN A 6 0 SHEET 2 AA1 4 LEU A 18 SER A 25 -1 O LYS A 23 N VAL A 5 SHEET 3 AA1 4 THR A 78 TRP A 83 -1 O ALA A 79 N CYS A 22 SHEET 4 AA1 4 THR A 69 ASP A 73 -1 N SER A 71 O TYR A 80 SHEET 1 AA2 6 GLU A 10 LYS A 12 0 SHEET 2 AA2 6 THR A 117 VAL A 121 1 O THR A 120 N LYS A 12 SHEET 3 AA2 6 ALA A 92 LYS A 100 -1 N ALA A 92 O VAL A 119 SHEET 4 AA2 6 ILE A 34 GLN A 39 -1 N GLY A 35 O ALA A 97 SHEET 5 AA2 6 GLU A 46 ILE A 51 -1 O MET A 48 N TRP A 36 SHEET 6 AA2 6 THR A 58 TYR A 60 -1 O ARG A 59 N ILE A 50 SHEET 1 AA3 4 GLU A 10 LYS A 12 0 SHEET 2 AA3 4 THR A 117 VAL A 121 1 O THR A 120 N LYS A 12 SHEET 3 AA3 4 ALA A 92 LYS A 100 -1 N ALA A 92 O VAL A 119 SHEET 4 AA3 4 TYR A 109 TRP A 113 -1 O TYR A 109 N LYS A 100 SHEET 1 AA4 4 SER A 130 LEU A 134 0 SHEET 2 AA4 4 THR A 145 TYR A 155 -1 O GLY A 149 N LEU A 134 SHEET 3 AA4 4 TYR A 186 PRO A 195 -1 O VAL A 194 N ALA A 146 SHEET 4 AA4 4 VAL A 173 THR A 175 -1 N HIS A 174 O VAL A 191 SHEET 1 AA5 4 SER A 130 LEU A 134 0 SHEET 2 AA5 4 THR A 145 TYR A 155 -1 O GLY A 149 N LEU A 134 SHEET 3 AA5 4 TYR A 186 PRO A 195 -1 O VAL A 194 N ALA A 146 SHEET 4 AA5 4 VAL A 179 LEU A 180 -1 N VAL A 179 O SER A 187 SHEET 1 AA6 3 THR A 161 TRP A 164 0 SHEET 2 AA6 3 ILE A 205 HIS A 210 -1 O ASN A 207 N SER A 163 SHEET 3 AA6 3 THR A 215 ARG A 220 -1 O VAL A 217 N VAL A 208 SHEET 1 AA7 4 LEU B 4 SER B 7 0 SHEET 2 AA7 4 ALA B 19 ALA B 25 -1 O ARG B 24 N THR B 5 SHEET 3 AA7 4 GLU B 70 ILE B 75 -1 O LEU B 73 N LEU B 21 SHEET 4 AA7 4 PHE B 62 GLY B 66 -1 N SER B 63 O THR B 74 SHEET 1 AA8 6 THR B 10 VAL B 13 0 SHEET 2 AA8 6 THR B 103 ILE B 107 1 O LYS B 104 N LEU B 11 SHEET 3 AA8 6 VAL B 85 GLN B 90 -1 N TYR B 86 O THR B 103 SHEET 4 AA8 6 LEU B 33 GLN B 38 -1 N GLN B 38 O VAL B 85 SHEET 5 AA8 6 ARG B 45 TYR B 49 -1 O LEU B 47 N TRP B 35 SHEET 6 AA8 6 THR B 53 ARG B 54 -1 O THR B 53 N TYR B 49 SHEET 1 AA9 4 THR B 10 VAL B 13 0 SHEET 2 AA9 4 THR B 103 ILE B 107 1 O LYS B 104 N LEU B 11 SHEET 3 AA9 4 VAL B 85 GLN B 90 -1 N TYR B 86 O THR B 103 SHEET 4 AA9 4 THR B 98 PHE B 99 -1 O THR B 98 N GLN B 90 SHEET 1 AB1 4 SER B 115 PHE B 119 0 SHEET 2 AB1 4 THR B 130 PHE B 140 -1 O LEU B 136 N PHE B 117 SHEET 3 AB1 4 TYR B 174 SER B 183 -1 O TYR B 174 N PHE B 140 SHEET 4 AB1 4 SER B 160 VAL B 164 -1 N SER B 163 O SER B 177 SHEET 1 AB2 4 ALA B 154 LEU B 155 0 SHEET 2 AB2 4 LYS B 146 VAL B 151 -1 N VAL B 151 O ALA B 154 SHEET 3 AB2 4 VAL B 192 THR B 198 -1 O ALA B 194 N LYS B 150 SHEET 4 AB2 4 VAL B 206 ASN B 211 -1 O VAL B 206 N VAL B 197 SHEET 1 AB3 2 TYR C 70 GLN C 73 0 SHEET 2 AB3 2 LEU C 166 PRO C 168 1 O LEU C 167 N GLN C 73 SHEET 1 AB4 5 SER C 81 TYR C 83 0 SHEET 2 AB4 5 VAL C 172 ILE C 175 1 O TRP C 174 N SER C 81 SHEET 3 AB4 5 PHE C 129 THR C 134 1 N PHE C 129 O LEU C 173 SHEET 4 AB4 5 GLY C 137 GLY C 142 -1 O TRP C 141 N PHE C 130 SHEET 5 AB4 5 LYS C 110 LYS C 111 1 N LYS C 110 O GLY C 140 SHEET 1 AB5 2 LYS C 147 ARG C 149 0 SHEET 2 AB5 2 CYS C 156 SER C 158 -1 O SER C 157 N SER C 148 SHEET 1 AB6 4 ASP C 177 CYS C 180 0 SHEET 2 AB6 4 CYS C 327 LEU C 337 -1 O PHE C 330 N ASP C 177 SHEET 3 AB6 4 ILE C 205 ILE C 208 -1 N CYS C 206 O THR C 336 SHEET 4 AB6 4 ILE C 211 VAL C 212 -1 O ILE C 211 N ILE C 208 SHEET 1 AB7 4 ASP C 177 CYS C 180 0 SHEET 2 AB7 4 CYS C 327 LEU C 337 -1 O PHE C 330 N ASP C 177 SHEET 3 AB7 4 GLN C 223 ASP C 231 -1 N GLN C 223 O ALA C 335 SHEET 4 AB7 4 ILE C 238 MET C 240 -1 O ILE C 238 N MET C 230 SHEET 1 AB8 3 LYS C 244 VAL C 248 0 SHEET 2 AB8 3 GLU C 313 TYR C 318 -1 O SER C 317 N LYS C 244 SHEET 3 AB8 3 MET C 321 VAL C 323 -1 O VAL C 323 N VAL C 316 SHEET 1 AB9 4 GLY C 264 PRO C 265 0 SHEET 2 AB9 4 PHE C 256 LYS C 260 -1 N LYS C 260 O GLY C 264 SHEET 3 AB9 4 ARG C 304 LEU C 307 -1 O ARG C 304 N TYR C 259 SHEET 4 AB9 4 ARG C 281 GLY C 282 1 N ARG C 281 O CYS C 305 SSBOND 1 CYS A 22 CYS A 96 1555 1555 2.05 SSBOND 2 CYS A 150 CYS A 206 1555 1555 2.05 SSBOND 3 CYS B 23 CYS B 88 1555 1555 2.12 SSBOND 4 CYS B 135 CYS B 195 1555 1555 2.05 SSBOND 5 CYS C 26 CYS C 49 1555 1555 2.11 SSBOND 6 CYS C 143 CYS C 156 1555 1555 2.10 SSBOND 7 CYS C 180 CYS C 327 1555 1555 2.13 SSBOND 8 CYS C 206 CYS C 216 1555 1555 2.04 SSBOND 9 CYS C 258 CYS C 305 1555 1555 2.07 SSBOND 10 CYS C 266 CYS C 303 1555 1555 2.07 SSBOND 11 CYS C 274 CYS C 280 1555 1555 2.10 SSBOND 12 CYS C 287 CYS C 292 1555 1555 2.08 LINK ND2 ASN C 33 C1 NAG D 1 1555 1555 1.43 LINK ND2 ASN C 63 C1 NAG E 1 1555 1555 1.50 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.40 LINK O4 NAG E 2 C1 MAN E 3 1555 1555 1.46 CISPEP 1 PRO A 136 SER A 137 0 -17.92 CISPEP 2 PHE A 156 PRO A 157 0 -7.62 CISPEP 3 GLU A 158 PRO A 159 0 -2.49 CISPEP 4 SER B 7 PRO B 8 0 -9.50 CISPEP 5 TRP B 94 PRO B 95 0 -1.48 CISPEP 6 TYR B 141 PRO B 142 0 2.19 CISPEP 7 TYR C 83 PRO C 84 0 1.36 CISPEP 8 GLY C 295 GLU C 296 0 -7.32 CRYST1 82.605 103.194 112.031 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012106 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009690 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008926 0.00000