HEADER SUGAR BINDING PROTEIN 23-JUL-17 5Y22 TITLE NMR-BASED MODEL OF THE 22 AMINO ACID PEPTIDE IN POLYSIALYLTRANSFERASE TITLE 2 DOMAIN (PSTD) OF THE POLYSIALYLTRANSFERASE ST8SIA IV COMPND MOL_ID: 1; COMPND 2 MOLECULE: 22AA-PSTD PEPTIDE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 258-279; COMPND 5 EC: 2.4.99.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606 KEYWDS POLYSIALYLTRANSFERASE DOMAIN (PSTD) POLYSIALYLTRANSFERASE ST8SIA IV KEYWDS 2 POLYSIALIC ACID (POLYSIA), SUGAR BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR B.LU,S.M.LIAO,J.M.HUANG,Z.L.LU,D.CHEN,X.H.LIU,G.P.ZHOU,R.B.HUANG REVDAT 3 15-MAY-24 5Y22 1 REMARK REVDAT 2 14-JUN-23 5Y22 1 REMARK REVDAT 1 29-NOV-17 5Y22 0 JRNL AUTH B.LU,S.M.LIAO,D.CHEN,X.H.LIU,G.P.ZHOU,R.B.HUANG JRNL TITL NMR-BASED MODEL OF THE 22 AMINO ACID PEPTIDE IN JRNL TITL 2 POLYSIALYLTRANSFERASE DOMAIN (PSTD) OF THE JRNL TITL 3 POLYSIALYLTRANSFERASE ST8SIA IV JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 8.9, CNS 1.2.1 REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5Y22 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1300003524. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.7 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.0 MM 22AA-PSTD PEPTIDE, 40 % REMARK 210 TRIFLUOROETHANOL-D3, REMARK 210 TRIFLUOROETHANOL/WATER REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-1H NOESY; 2D 1H-1H TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : DD2 REMARK 210 SPECTROMETER MANUFACTURER : AGILENT REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ANALYSIS 2.4, ARIA 2.3.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 2 PRO A 21 27.63 -78.79 REMARK 500 4 PRO A 21 105.48 -43.11 REMARK 500 5 ARG A 2 121.37 73.39 REMARK 500 5 PRO A 21 88.99 -61.47 REMARK 500 8 PRO A 21 84.53 -63.80 REMARK 500 10 ILE A 18 91.97 52.56 REMARK 500 11 ILE A 18 77.89 47.27 REMARK 500 11 PRO A 21 44.10 -76.55 REMARK 500 12 ILE A 18 71.92 -105.62 REMARK 500 12 PRO A 21 102.56 -47.97 REMARK 500 13 ILE A 18 84.62 60.13 REMARK 500 17 ARG A 2 123.53 70.07 REMARK 500 17 PRO A 21 105.96 -55.95 REMARK 500 18 ASN A 14 -63.16 -93.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36109 RELATED DB: BMRB REMARK 900 NMR-BASED MODEL OF THE 22 AMINO ACID PEPTIDE IN REMARK 900 POLYSIALYLTRANSFERASE DOMAIN (PSTD) OF THE POLYSIALYLTRANSFERASE REMARK 900 ST8SIA IV DBREF 5Y22 A 1 22 UNP Q92187 SIA8D_HUMAN 258 279 SEQRES 1 A 22 LEU ARG LEU ILE HIS ALA VAL ARG GLY TYR TRP LEU THR SEQRES 2 A 22 ASN LYS VAL PRO ILE LYS ARG PRO SER HELIX 1 AA1 ARG A 2 THR A 13 1 12 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1