HEADER VIRAL PROTEIN 25-JUL-17 5Y2E TITLE CRYSTAL STRUCTURE OF THE OLIGOMERIZATION DOMAIN OF NSP4 FROM THE TITLE 2 ROTAVIRUS STRAIN NCDV COMPND MOL_ID: 1; COMPND 2 MOLECULE: NON-STRUCTURAL GLYCOPROTEIN 4; COMPND 3 CHAIN: D, A, C, B; COMPND 4 FRAGMENT: UNP RESIDUES 95-140; COMPND 5 SYNONYM: NSP4,NCVP5,NS28; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ROTAVIRUS A (STRAIN RVA/COW/UNITED STATES/NCDV- SOURCE 3 LINCOLN/1969/G6P6[1]); SOURCE 4 ORGANISM_COMMON: RV-A; SOURCE 5 ORGANISM_TAXID: 36439; SOURCE 6 STRAIN: RVA/COW/UNITED STATES/NCDV-LINCOLN/1969/G6P6[1]; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS ANTIPARALLEL TETRAMER NSP4 ROTAVIRUS COILED-COIL, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.SUGUNA,S.KUMAR REVDAT 3 27-MAR-24 5Y2E 1 REMARK REVDAT 2 30-MAY-18 5Y2E 1 JRNL REVDAT 1 14-MAR-18 5Y2E 0 JRNL AUTH S.KUMAR,R.RAMAPPA,K.PAMIDIMUKKALA,C.D.RAO,K.SUGUNA JRNL TITL NEW TETRAMERIC FORMS OF THE ROTAVIRUS NSP4 WITH ANTIPARALLEL JRNL TITL 2 HELICES. JRNL REF ARCH. VIROL. V. 163 1531 2018 JRNL REFN ISSN 1432-8798 JRNL PMID 29455326 JRNL DOI 10.1007/S00705-018-3753-6 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.38 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 3 NUMBER OF REFLECTIONS : 6980 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 336 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 479 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.3400 REMARK 3 BIN FREE R VALUE SET COUNT : 23 REMARK 3 BIN FREE R VALUE : 0.4330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1395 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 8 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.35000 REMARK 3 B22 (A**2) : 0.89000 REMARK 3 B33 (A**2) : -5.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.777 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.353 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1395 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1397 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1866 ; 1.728 ; 1.998 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3209 ; 3.633 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 178 ; 3.916 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 53 ;35.500 ;26.226 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 305 ;21.787 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;21.372 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 240 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1474 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 218 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 724 ; 4.042 ; 5.434 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 723 ; 4.039 ; 5.432 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 898 ; 6.203 ; 8.116 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 94 D 139 REMARK 3 ORIGIN FOR THE GROUP (A): 0.7530 8.8690 -19.4070 REMARK 3 T TENSOR REMARK 3 T11: 0.0136 T22: 0.0209 REMARK 3 T33: 0.0293 T12: -0.0002 REMARK 3 T13: 0.0074 T23: -0.0154 REMARK 3 L TENSOR REMARK 3 L11: 0.5120 L22: 1.8222 REMARK 3 L33: 12.5552 L12: -0.1269 REMARK 3 L13: 0.8400 L23: -3.8385 REMARK 3 S TENSOR REMARK 3 S11: -0.0063 S12: 0.0147 S13: -0.0082 REMARK 3 S21: -0.1338 S22: 0.0191 S23: -0.0403 REMARK 3 S31: 0.3262 S32: 0.2319 S33: -0.0127 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 94 A 138 REMARK 3 ORIGIN FOR THE GROUP (A): -5.1420 2.5090 -13.4800 REMARK 3 T TENSOR REMARK 3 T11: 0.0390 T22: 0.0153 REMARK 3 T33: 0.0185 T12: -0.0122 REMARK 3 T13: -0.0013 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 0.5489 L22: 0.6306 REMARK 3 L33: 12.9446 L12: -0.0061 REMARK 3 L13: -1.1521 L23: -0.6669 REMARK 3 S TENSOR REMARK 3 S11: 0.0013 S12: -0.0383 S13: -0.0810 REMARK 3 S21: -0.0658 S22: -0.0231 S23: 0.0229 REMARK 3 S31: 0.5187 S32: 0.0354 S33: 0.0217 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 94 C 140 REMARK 3 ORIGIN FOR THE GROUP (A): -9.7580 8.7650 -17.8300 REMARK 3 T TENSOR REMARK 3 T11: 0.0122 T22: 0.0637 REMARK 3 T33: 0.0132 T12: -0.0177 REMARK 3 T13: 0.0045 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.4514 L22: 0.4861 REMARK 3 L33: 11.1863 L12: -0.0403 REMARK 3 L13: 0.8357 L23: 0.2860 REMARK 3 S TENSOR REMARK 3 S11: -0.0364 S12: -0.0341 S13: -0.0132 REMARK 3 S21: -0.0151 S22: 0.0268 S23: 0.0144 REMARK 3 S31: -0.0356 S32: -0.2394 S33: 0.0096 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 94 B 137 REMARK 3 ORIGIN FOR THE GROUP (A): -3.0820 13.4460 -11.8860 REMARK 3 T TENSOR REMARK 3 T11: 0.0187 T22: 0.0281 REMARK 3 T33: 0.0688 T12: -0.0015 REMARK 3 T13: 0.0200 T23: -0.0087 REMARK 3 L TENSOR REMARK 3 L11: 2.0511 L22: 1.1039 REMARK 3 L33: 17.6475 L12: -0.6017 REMARK 3 L13: 4.9774 L23: -3.1264 REMARK 3 S TENSOR REMARK 3 S11: -0.1381 S12: -0.0117 S13: 0.0725 REMARK 3 S21: 0.0048 S22: -0.0719 S23: -0.1228 REMARK 3 S31: -0.3395 S32: -0.0406 S33: 0.2101 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5Y2E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1300004546. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-AUG-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7012 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 61.380 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRI-SODIUM CITRATE DEHYDRATE, REMARK 280 0.5M AMMONIUM SULFATE, 1.0M LITHIUM SULFATE MONOHYDRATE, PH 5.6, REMARK 280 MICROBATCH, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.67500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.30500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.07000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.30500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.67500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 24.07000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -103.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, A, C, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP D 140 REMARK 465 VAL A 139 REMARK 465 ASP A 140 REMARK 465 ALA B 138 REMARK 465 VAL B 139 REMARK 465 ASP B 140 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET D 94 CG SD CE REMARK 470 GLU D 96 CG CD OE1 OE2 REMARK 470 LYS D 97 CG CD CE NZ REMARK 470 ARG D 101 CD NE CZ NH1 NH2 REMARK 470 LYS D 104 CG CD CE NZ REMARK 470 ARG D 107 CD NE CZ NH1 NH2 REMARK 470 LYS D 115 CE NZ REMARK 470 ARG D 119 CZ NH1 NH2 REMARK 470 LYS D 128 CD CE NZ REMARK 470 ARG D 129 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 133 CE NZ REMARK 470 ARG D 137 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 97 CG CD CE NZ REMARK 470 GLN A 98 CG CD OE1 NE2 REMARK 470 ARG A 101 CD NE CZ NH1 NH2 REMARK 470 ARG A 108 CZ NH1 NH2 REMARK 470 LYS A 115 CD CE NZ REMARK 470 LYS A 128 CD CE NZ REMARK 470 ARG A 129 NE CZ NH1 NH2 REMARK 470 LYS A 133 CE NZ REMARK 470 LYS C 97 CG CD CE NZ REMARK 470 ARG C 101 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 107 CZ NH1 NH2 REMARK 470 LYS C 115 CD CE NZ REMARK 470 ARG C 119 NE CZ NH1 NH2 REMARK 470 ARG C 129 NE CZ NH1 NH2 REMARK 470 LYS C 133 CG CD CE NZ REMARK 470 ARG C 137 CG CD NE CZ NH1 NH2 REMARK 470 ASP C 140 CG OD1 OD2 REMARK 470 LYS B 97 CG CD CE NZ REMARK 470 GLN B 98 CD OE1 NE2 REMARK 470 ARG B 101 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 104 CD CE NZ REMARK 470 ARG B 108 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 115 CD CE NZ REMARK 470 LYS B 128 CG CD CE NZ REMARK 470 ARG B 129 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE B 95 N GLN B 98 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 96 -36.40 -34.98 REMARK 500 REMARK 500 REMARK: NULL DBREF 5Y2E D 95 140 UNP P08434 NSP4_ROTBN 95 140 DBREF 5Y2E A 95 140 UNP P08434 NSP4_ROTBN 95 140 DBREF 5Y2E C 95 140 UNP P08434 NSP4_ROTBN 95 140 DBREF 5Y2E B 95 140 UNP P08434 NSP4_ROTBN 95 140 SEQADV 5Y2E MET D 94 UNP P08434 EXPRESSION TAG SEQADV 5Y2E GLY D 120 UNP P08434 GLU 120 ENGINEERED MUTATION SEQADV 5Y2E MET A 94 UNP P08434 EXPRESSION TAG SEQADV 5Y2E GLY A 120 UNP P08434 GLU 120 ENGINEERED MUTATION SEQADV 5Y2E MET C 94 UNP P08434 EXPRESSION TAG SEQADV 5Y2E GLY C 120 UNP P08434 GLU 120 ENGINEERED MUTATION SEQADV 5Y2E MET B 94 UNP P08434 EXPRESSION TAG SEQADV 5Y2E GLY B 120 UNP P08434 GLU 120 ENGINEERED MUTATION SEQRES 1 D 47 MET ILE GLU LYS GLN MET ASP ARG VAL VAL LYS GLU MET SEQRES 2 D 47 ARG ARG GLN LEU GLU MET ILE ASP LYS LEU THR THR ARG SEQRES 3 D 47 GLY ILE GLU GLN VAL GLU LEU LEU LYS ARG ILE HIS ASP SEQRES 4 D 47 LYS LEU MET ILE ARG ALA VAL ASP SEQRES 1 A 47 MET ILE GLU LYS GLN MET ASP ARG VAL VAL LYS GLU MET SEQRES 2 A 47 ARG ARG GLN LEU GLU MET ILE ASP LYS LEU THR THR ARG SEQRES 3 A 47 GLY ILE GLU GLN VAL GLU LEU LEU LYS ARG ILE HIS ASP SEQRES 4 A 47 LYS LEU MET ILE ARG ALA VAL ASP SEQRES 1 C 47 MET ILE GLU LYS GLN MET ASP ARG VAL VAL LYS GLU MET SEQRES 2 C 47 ARG ARG GLN LEU GLU MET ILE ASP LYS LEU THR THR ARG SEQRES 3 C 47 GLY ILE GLU GLN VAL GLU LEU LEU LYS ARG ILE HIS ASP SEQRES 4 C 47 LYS LEU MET ILE ARG ALA VAL ASP SEQRES 1 B 47 MET ILE GLU LYS GLN MET ASP ARG VAL VAL LYS GLU MET SEQRES 2 B 47 ARG ARG GLN LEU GLU MET ILE ASP LYS LEU THR THR ARG SEQRES 3 B 47 GLY ILE GLU GLN VAL GLU LEU LEU LYS ARG ILE HIS ASP SEQRES 4 B 47 LYS LEU MET ILE ARG ALA VAL ASP FORMUL 5 HOH *8(H2 O) HELIX 1 AA1 MET D 94 VAL D 139 1 46 HELIX 2 AA2 ILE A 95 ALA A 138 1 44 HELIX 3 AA3 ILE C 95 ALA C 138 1 44 HELIX 4 AA4 ILE B 95 ARG B 137 1 43 CRYST1 43.350 48.140 122.610 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023068 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020773 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008156 0.00000