HEADER TOXIN 25-JUL-17 5Y2G TITLE STRUCTURE OF MBP TAGGED GBS CAMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALTOSE-BINDING PERIPLASMIC PROTEIN,PROTEIN B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 27-392,UNP RESIDUES 1-226; COMPND 5 SYNONYM: MBP,MMBP,MALTODEXTRIN-BINDING PROTEIN,CAMP FACTOR; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI, STREPTOCOCCUS AGALACTIAE; SOURCE 3 ORGANISM_TAXID: 83333, 1311; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: MALE, B4034, JW3994; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CAMP FACTOR, PORE FORMING TOXIN, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR T.JIN,Y.LI REVDAT 4 22-NOV-23 5Y2G 1 HETSYN REVDAT 3 29-JUL-20 5Y2G 1 COMPND REMARK HET HETNAM REVDAT 3 2 1 FORMUL LINK SITE ATOM REVDAT 2 14-AUG-19 5Y2G 1 JRNL REVDAT 1 27-FEB-19 5Y2G 0 JRNL AUTH Y.LI,W.ZENG,Y.LI,W.FAN,H.MA,X.FAN,J.JIANG,E.BREFO-MENSAH, JRNL AUTH 2 Y.ZHANG,M.YANG,Z.DONG,M.PALMER,T.JIN JRNL TITL STRUCTURE DETERMINATION OF THE CAMP FACTOR OF STREPTOCOCCUS JRNL TITL 2 AGALACTIAE WITH THE AID OF AN MBP TAG AND INSIGHTS INTO JRNL TITL 3 MEMBRANE-SURFACE ATTACHMENT. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 75 772 2019 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 31373576 JRNL DOI 10.1107/S205979831901057X REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2481) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 20073 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.246 REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.315 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.960 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.1903 - 7.2231 0.94 1360 150 0.1706 0.2543 REMARK 3 2 7.2231 - 5.7362 1.00 1344 149 0.2392 0.3035 REMARK 3 3 5.7362 - 5.0120 1.00 1310 146 0.2343 0.3018 REMARK 3 4 5.0120 - 4.5541 1.00 1303 143 0.2125 0.3062 REMARK 3 5 4.5541 - 4.2279 1.00 1307 144 0.2325 0.3198 REMARK 3 6 4.2279 - 3.9787 1.00 1288 143 0.2655 0.3234 REMARK 3 7 3.9787 - 3.7796 1.00 1279 142 0.3157 0.4109 REMARK 3 8 3.7796 - 3.6151 1.00 1284 142 0.3337 0.4069 REMARK 3 9 3.6151 - 3.4760 1.00 1268 141 0.3418 0.4244 REMARK 3 10 3.4760 - 3.3561 1.00 1274 140 0.3586 0.4600 REMARK 3 11 3.3561 - 3.2511 1.00 1271 141 0.3758 0.4394 REMARK 3 12 3.2511 - 3.1582 1.00 1265 140 0.3580 0.4527 REMARK 3 13 3.1582 - 3.0751 1.00 1276 141 0.3906 0.4532 REMARK 3 14 3.0751 - 3.0001 0.99 1244 138 0.3923 0.4482 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.610 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 38.780 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4627 REMARK 3 ANGLE : 1.221 6290 REMARK 3 CHIRALITY : 0.062 722 REMARK 3 PLANARITY : 0.008 809 REMARK 3 DIHEDRAL : 3.844 2793 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): 74.5525 159.9342 -4.8430 REMARK 3 T TENSOR REMARK 3 T11: 1.4763 T22: 1.9955 REMARK 3 T33: 1.5309 T12: 0.9259 REMARK 3 T13: -0.0962 T23: -0.3767 REMARK 3 L TENSOR REMARK 3 L11: 7.0492 L22: 1.8343 REMARK 3 L33: 11.0299 L12: 0.8792 REMARK 3 L13: 1.4665 L23: -0.7772 REMARK 3 S TENSOR REMARK 3 S11: 0.3184 S12: 2.1022 S13: -0.9346 REMARK 3 S21: -0.0828 S22: -0.3073 S23: -0.8355 REMARK 3 S31: 1.9925 S32: 1.0010 S33: 0.1282 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 134 THROUGH 237 ) REMARK 3 ORIGIN FOR THE GROUP (A): 62.4778 175.1678 6.4104 REMARK 3 T TENSOR REMARK 3 T11: 0.9825 T22: 0.9531 REMARK 3 T33: 1.4632 T12: 0.2626 REMARK 3 T13: -0.3610 T23: 0.0669 REMARK 3 L TENSOR REMARK 3 L11: 10.0591 L22: 5.1040 REMARK 3 L33: 8.3286 L12: 4.4804 REMARK 3 L13: 2.4127 L23: 2.9526 REMARK 3 S TENSOR REMARK 3 S11: -0.8082 S12: 0.5400 S13: 2.3274 REMARK 3 S21: -0.7212 S22: -0.6426 S23: 0.5568 REMARK 3 S31: -1.2187 S32: -0.6877 S33: 0.9025 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 238 THROUGH 314 ) REMARK 3 ORIGIN FOR THE GROUP (A): 79.6511 165.8301 -3.4202 REMARK 3 T TENSOR REMARK 3 T11: 0.9331 T22: 2.1399 REMARK 3 T33: 1.2366 T12: 0.0904 REMARK 3 T13: -0.0545 T23: 0.0578 REMARK 3 L TENSOR REMARK 3 L11: 10.1816 L22: 9.8970 REMARK 3 L33: 8.5871 L12: 0.4782 REMARK 3 L13: 0.9152 L23: 1.2373 REMARK 3 S TENSOR REMARK 3 S11: -0.6416 S12: 2.7477 S13: 0.2797 REMARK 3 S21: -1.4970 S22: 0.1979 S23: -1.4578 REMARK 3 S31: -0.0629 S32: 0.8919 S33: 0.4077 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 315 THROUGH 353 ) REMARK 3 ORIGIN FOR THE GROUP (A): 67.2933 166.3014 6.9937 REMARK 3 T TENSOR REMARK 3 T11: 0.9384 T22: 0.9151 REMARK 3 T33: 1.1934 T12: 0.2098 REMARK 3 T13: -0.1008 T23: -0.0902 REMARK 3 L TENSOR REMARK 3 L11: 3.2000 L22: 8.3494 REMARK 3 L33: 10.5375 L12: 1.1795 REMARK 3 L13: 2.3178 L23: -1.2516 REMARK 3 S TENSOR REMARK 3 S11: -0.8410 S12: 0.8479 S13: 0.2273 REMARK 3 S21: -0.2546 S22: -0.0635 S23: -0.4922 REMARK 3 S31: -0.0877 S32: 0.2320 S33: 1.0281 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 354 THROUGH 429 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.4178 158.6610 2.1829 REMARK 3 T TENSOR REMARK 3 T11: 1.3230 T22: 2.3211 REMARK 3 T33: 1.4725 T12: -0.6037 REMARK 3 T13: -0.2615 T23: 0.2347 REMARK 3 L TENSOR REMARK 3 L11: 3.7643 L22: 4.4756 REMARK 3 L33: 1.8231 L12: -1.5296 REMARK 3 L13: 5.7103 L23: -1.2474 REMARK 3 S TENSOR REMARK 3 S11: 0.1581 S12: -0.5787 S13: -0.6115 REMARK 3 S21: -0.3758 S22: 0.7751 S23: 0.8382 REMARK 3 S31: 1.2810 S32: -0.8018 S33: -1.0396 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 430 THROUGH 584 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.1729 173.4508 2.3422 REMARK 3 T TENSOR REMARK 3 T11: 1.2622 T22: 1.4115 REMARK 3 T33: 1.1325 T12: -0.4781 REMARK 3 T13: -0.2050 T23: 0.3433 REMARK 3 L TENSOR REMARK 3 L11: 4.3048 L22: 3.2359 REMARK 3 L33: 3.5350 L12: -1.6521 REMARK 3 L13: -2.5948 L23: 1.4994 REMARK 3 S TENSOR REMARK 3 S11: -0.3546 S12: 0.1439 S13: 0.5673 REMARK 3 S21: 0.4556 S22: 0.3789 S23: 0.2336 REMARK 3 S31: -0.1680 S32: 0.3042 S33: -0.0470 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5Y2G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1300004567. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 190 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0331 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20079 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 20.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 32.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 21.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4IFP REMARK 200 REMARK 200 REMARK: PYRAMID SHAPE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 M AMMONIUM SULFATE, 0.1 M HEPES, REMARK 280 PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 104.28000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 52.14000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 78.21000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 26.07000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 130.35000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 104.28000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 52.14000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 26.07000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 78.21000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 130.35000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 ILE A 3 REMARK 465 ALA A 585 REMARK 465 ALA A 586 REMARK 465 ALA A 587 REMARK 465 LEU A 588 REMARK 465 GLU A 589 REMARK 465 HIS A 590 REMARK 465 HIS A 591 REMARK 465 HIS A 592 REMARK 465 HIS A 593 REMARK 465 HIS A 594 REMARK 465 HIS A 595 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 96 NH1 ARG A 99 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 ND2 ASN A 548 OG1 THR A 552 10775 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 65 -8.59 -57.57 REMARK 500 ALA A 85 2.90 -67.08 REMARK 500 ALA A 106 -179.67 -179.72 REMARK 500 ALA A 113 129.64 -170.22 REMARK 500 ASN A 151 105.48 -59.52 REMARK 500 ALA A 187 -70.03 -59.87 REMARK 500 ASP A 210 -168.72 -117.74 REMARK 500 SER A 239 -166.89 -78.54 REMARK 500 THR A 287 -168.99 -161.53 REMARK 500 ASP A 297 -68.71 -94.98 REMARK 500 ASP A 371 -56.02 -122.75 REMARK 500 ARG A 421 -130.48 -97.39 REMARK 500 SER A 424 1.86 57.02 REMARK 500 THR A 426 73.93 52.24 REMARK 500 PRO A 508 -8.24 -50.22 REMARK 500 ALA A 582 40.96 -95.46 REMARK 500 REMARK 500 REMARK: NULL DBREF 5Y2G A 2 367 UNP P0AEX9 MALE_ECOLI 27 392 DBREF 5Y2G A 375 584 UNP P09879 PROB_STRAG 17 226 SEQADV 5Y2G MET A 1 UNP P0AEX9 EXPRESSION TAG SEQADV 5Y2G ALA A 83 UNP P0AEX9 ASP 108 CONFLICT SEQADV 5Y2G ALA A 84 UNP P0AEX9 LYS 109 CONFLICT SEQADV 5Y2G ALA A 173 UNP P0AEX9 GLU 198 CONFLICT SEQADV 5Y2G ALA A 174 UNP P0AEX9 ASN 199 CONFLICT SEQADV 5Y2G ALA A 240 UNP P0AEX9 LYS 265 CONFLICT SEQADV 5Y2G ALA A 360 UNP P0AEX9 GLU 385 CONFLICT SEQADV 5Y2G ALA A 363 UNP P0AEX9 LYS 388 CONFLICT SEQADV 5Y2G ALA A 364 UNP P0AEX9 ASP 389 CONFLICT SEQADV 5Y2G ASN A 368 UNP P0AEX9 LINKER SEQADV 5Y2G ALA A 369 UNP P0AEX9 LINKER SEQADV 5Y2G VAL A 370 UNP P0AEX9 LINKER SEQADV 5Y2G ASP A 371 UNP P0AEX9 LINKER SEQADV 5Y2G SER A 372 UNP P0AEX9 LINKER SEQADV 5Y2G ASN A 373 UNP P0AEX9 LINKER SEQADV 5Y2G ASN A 374 UNP P0AEX9 LINKER SEQADV 5Y2G ALA A 585 UNP P09879 EXPRESSION TAG SEQADV 5Y2G ALA A 586 UNP P09879 EXPRESSION TAG SEQADV 5Y2G ALA A 587 UNP P09879 EXPRESSION TAG SEQADV 5Y2G LEU A 588 UNP P09879 EXPRESSION TAG SEQADV 5Y2G GLU A 589 UNP P09879 EXPRESSION TAG SEQADV 5Y2G HIS A 590 UNP P09879 EXPRESSION TAG SEQADV 5Y2G HIS A 591 UNP P09879 EXPRESSION TAG SEQADV 5Y2G HIS A 592 UNP P09879 EXPRESSION TAG SEQADV 5Y2G HIS A 593 UNP P09879 EXPRESSION TAG SEQADV 5Y2G HIS A 594 UNP P09879 EXPRESSION TAG SEQADV 5Y2G HIS A 595 UNP P09879 EXPRESSION TAG SEQRES 1 A 595 MET LYS ILE GLU GLU GLY LYS LEU VAL ILE TRP ILE ASN SEQRES 2 A 595 GLY ASP LYS GLY TYR ASN GLY LEU ALA GLU VAL GLY LYS SEQRES 3 A 595 LYS PHE GLU LYS ASP THR GLY ILE LYS VAL THR VAL GLU SEQRES 4 A 595 HIS PRO ASP LYS LEU GLU GLU LYS PHE PRO GLN VAL ALA SEQRES 5 A 595 ALA THR GLY ASP GLY PRO ASP ILE ILE PHE TRP ALA HIS SEQRES 6 A 595 ASP ARG PHE GLY GLY TYR ALA GLN SER GLY LEU LEU ALA SEQRES 7 A 595 GLU ILE THR PRO ALA ALA ALA PHE GLN ASP LYS LEU TYR SEQRES 8 A 595 PRO PHE THR TRP ASP ALA VAL ARG TYR ASN GLY LYS LEU SEQRES 9 A 595 ILE ALA TYR PRO ILE ALA VAL GLU ALA LEU SER LEU ILE SEQRES 10 A 595 TYR ASN LYS ASP LEU LEU PRO ASN PRO PRO LYS THR TRP SEQRES 11 A 595 GLU GLU ILE PRO ALA LEU ASP LYS GLU LEU LYS ALA LYS SEQRES 12 A 595 GLY LYS SER ALA LEU MET PHE ASN LEU GLN GLU PRO TYR SEQRES 13 A 595 PHE THR TRP PRO LEU ILE ALA ALA ASP GLY GLY TYR ALA SEQRES 14 A 595 PHE LYS TYR ALA ALA GLY LYS TYR ASP ILE LYS ASP VAL SEQRES 15 A 595 GLY VAL ASP ASN ALA GLY ALA LYS ALA GLY LEU THR PHE SEQRES 16 A 595 LEU VAL ASP LEU ILE LYS ASN LYS HIS MET ASN ALA ASP SEQRES 17 A 595 THR ASP TYR SER ILE ALA GLU ALA ALA PHE ASN LYS GLY SEQRES 18 A 595 GLU THR ALA MET THR ILE ASN GLY PRO TRP ALA TRP SER SEQRES 19 A 595 ASN ILE ASP THR SER ALA VAL ASN TYR GLY VAL THR VAL SEQRES 20 A 595 LEU PRO THR PHE LYS GLY GLN PRO SER LYS PRO PHE VAL SEQRES 21 A 595 GLY VAL LEU SER ALA GLY ILE ASN ALA ALA SER PRO ASN SEQRES 22 A 595 LYS GLU LEU ALA LYS GLU PHE LEU GLU ASN TYR LEU LEU SEQRES 23 A 595 THR ASP GLU GLY LEU GLU ALA VAL ASN LYS ASP LYS PRO SEQRES 24 A 595 LEU GLY ALA VAL ALA LEU LYS SER TYR GLU GLU GLU LEU SEQRES 25 A 595 ALA LYS ASP PRO ARG ILE ALA ALA THR MET GLU ASN ALA SEQRES 26 A 595 GLN LYS GLY GLU ILE MET PRO ASN ILE PRO GLN MET SER SEQRES 27 A 595 ALA PHE TRP TYR ALA VAL ARG THR ALA VAL ILE ASN ALA SEQRES 28 A 595 ALA SER GLY ARG GLN THR VAL ASP ALA ALA LEU ALA ALA SEQRES 29 A 595 ALA GLN THR ASN ALA VAL ASP SER ASN ASN GLN ALA GLN SEQRES 30 A 595 GLN MET ALA GLN LYS LEU ASP GLN ASP SER ILE GLN LEU SEQRES 31 A 595 ARG ASN ILE LYS ASP ASN VAL GLN GLY THR ASP TYR GLU SEQRES 32 A 595 LYS PRO VAL ASN GLU ALA ILE THR SER VAL GLU LYS LEU SEQRES 33 A 595 LYS THR SER LEU ARG ALA ASN SER GLU THR VAL TYR ASP SEQRES 34 A 595 LEU ASN SER ILE GLY SER ARG VAL GLU ALA LEU THR ASP SEQRES 35 A 595 VAL ILE GLU ALA ILE THR PHE SER THR GLN HIS LEU ALA SEQRES 36 A 595 ASN LYS VAL SER GLN ALA ASN ILE ASP MET GLY PHE GLY SEQRES 37 A 595 ILE THR LYS LEU VAL ILE ARG ILE LEU ASP PRO PHE ALA SEQRES 38 A 595 SER VAL ASP SER ILE LYS ALA GLN VAL ASN ASP VAL LYS SEQRES 39 A 595 ALA LEU GLU GLN LYS VAL LEU THR TYR PRO ASP LEU LYS SEQRES 40 A 595 PRO THR ASP ARG ALA THR ILE TYR THR LYS SER LYS LEU SEQRES 41 A 595 ASP LYS GLU ILE TRP ASN THR ARG PHE THR ARG ASP LYS SEQRES 42 A 595 LYS VAL LEU ASN VAL LYS GLU PHE LYS VAL TYR ASN THR SEQRES 43 A 595 LEU ASN LYS ALA ILE THR HIS ALA VAL GLY VAL GLN LEU SEQRES 44 A 595 ASN PRO ASN VAL THR VAL GLN GLN VAL ASP GLN GLU ILE SEQRES 45 A 595 VAL THR LEU GLN ALA ALA LEU GLN THR ALA LEU LYS ALA SEQRES 46 A 595 ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS HET GLC B 1 12 HET GLC B 2 11 HET SO4 A 602 5 HET SO4 A 603 5 HET SO4 A 604 5 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM SO4 SULFATE ION HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 2 GLC 2(C6 H12 O6) FORMUL 3 SO4 3(O4 S 2-) HELIX 1 AA1 GLY A 17 ALA A 22 1 6 HELIX 2 AA2 ALA A 22 GLY A 33 1 12 HELIX 3 AA3 LYS A 43 ALA A 53 1 11 HELIX 4 AA4 HIS A 65 GLY A 69 1 5 HELIX 5 AA5 ALA A 83 ASP A 88 1 6 HELIX 6 AA6 TYR A 91 ARG A 99 1 9 HELIX 7 AA7 THR A 129 GLU A 132 5 4 HELIX 8 AA8 ILE A 133 GLY A 144 1 12 HELIX 9 AA9 GLU A 154 ASP A 165 1 12 HELIX 10 AB1 ASN A 186 ASN A 202 1 17 HELIX 11 AB2 ASP A 210 GLY A 221 1 12 HELIX 12 AB3 GLY A 229 TRP A 231 5 3 HELIX 13 AB4 ALA A 232 SER A 239 1 8 HELIX 14 AB5 THR A 250 GLN A 254 5 5 HELIX 15 AB6 ASN A 273 TYR A 284 1 12 HELIX 16 AB7 THR A 287 LYS A 296 1 10 HELIX 17 AB8 LEU A 305 GLU A 310 1 6 HELIX 18 AB9 ILE A 318 GLY A 328 1 11 HELIX 19 AC1 PRO A 335 GLY A 354 1 20 HELIX 20 AC2 THR A 357 ASP A 371 1 15 HELIX 21 AC3 ASN A 374 VAL A 397 1 24 HELIX 22 AC4 TYR A 402 LEU A 420 1 19 HELIX 23 AC5 ASN A 431 LEU A 454 1 24 HELIX 24 AC6 VAL A 458 ASP A 478 1 21 HELIX 25 AC7 SER A 482 LEU A 501 1 20 HELIX 26 AC8 THR A 513 VAL A 535 1 23 HELIX 27 AC9 GLU A 540 ASN A 560 1 21 HELIX 28 AD1 THR A 564 LEU A 579 1 16 SHEET 1 AA1 5 ILE A 10 TRP A 11 0 SHEET 2 AA1 5 ILE A 60 ALA A 64 1 O PHE A 62 N TRP A 11 SHEET 3 AA1 5 PHE A 259 ALA A 265 -1 O SER A 264 N TRP A 63 SHEET 4 AA1 5 TYR A 107 GLU A 112 -1 N ALA A 110 O LEU A 263 SHEET 5 AA1 5 ALA A 302 VAL A 303 -1 O ALA A 302 N VAL A 111 SHEET 1 AA2 4 ILE A 10 TRP A 11 0 SHEET 2 AA2 4 ILE A 60 ALA A 64 1 O PHE A 62 N TRP A 11 SHEET 3 AA2 4 PHE A 259 ALA A 265 -1 O SER A 264 N TRP A 63 SHEET 4 AA2 4 GLU A 329 ILE A 330 1 O GLU A 329 N VAL A 260 SHEET 1 AA3 3 MET A 225 ASN A 228 0 SHEET 2 AA3 3 SER A 115 ASN A 119 -1 N ILE A 117 O THR A 226 SHEET 3 AA3 3 TYR A 243 THR A 246 -1 O THR A 246 N LEU A 116 SHEET 1 AA4 2 TYR A 168 ALA A 173 0 SHEET 2 AA4 2 LYS A 176 GLY A 183 -1 O ASP A 178 N LYS A 171 LINK NH1 ARG A 528 O1 SO4 A 604 1555 1555 1.30 LINK O4 GLC B 1 C1 GLC B 2 1555 1555 1.40 CRYST1 145.620 145.620 156.420 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006867 0.003965 0.000000 0.00000 SCALE2 0.000000 0.007930 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006393 0.00000