HEADER TRANSCRIPTION 27-JUL-17 5Y2T TITLE STRUCTURE OF PPARGAMMA LIGAND BINDING DOMAIN - LOBEGLITAZONE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 235-505; COMPND 5 SYNONYM: PPAR-GAMMA,NUCLEAR RECEPTOR SUBFAMILY 1 GROUP C MEMBER 3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PPARG, NR1C3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET28B KEYWDS PPARGAMMA, NUCLEAR RECEPTOR, PIOGLITAZONE, THIAZOLIDINEDIONE, LIGAND KEYWDS 2 BINDING DOMAIN, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR Y.J.IM,M.LEE REVDAT 2 22-NOV-23 5Y2T 1 REMARK REVDAT 1 20-DEC-17 5Y2T 0 JRNL AUTH M.A.LEE,L.TAN,H.YANG,Y.G.IM,Y.J.IM JRNL TITL STRUCTURES OF PPAR GAMMA COMPLEXED WITH LOBEGLITAZONE AND JRNL TITL 2 PIOGLITAZONE REVEAL KEY DETERMINANTS FOR THE RECOGNITION OF JRNL TITL 3 ANTIDIABETIC DRUGS JRNL REF SCI REP V. 7 16837 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 29203903 JRNL DOI 10.1038/S41598-017-17082-X REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 62156 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 3148 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.7945 - 4.7609 0.99 2724 152 0.1868 0.2053 REMARK 3 2 4.7609 - 3.7801 0.99 2715 155 0.1650 0.1813 REMARK 3 3 3.7801 - 3.3026 1.00 2675 152 0.1795 0.2221 REMARK 3 4 3.3026 - 3.0008 1.00 2694 148 0.1970 0.2302 REMARK 3 5 3.0008 - 2.7858 1.00 2692 131 0.2009 0.2138 REMARK 3 6 2.7858 - 2.6216 1.00 2704 143 0.1979 0.2208 REMARK 3 7 2.6216 - 2.4903 1.00 2704 148 0.1994 0.2386 REMARK 3 8 2.4903 - 2.3819 1.00 2670 152 0.1975 0.2271 REMARK 3 9 2.3819 - 2.2903 1.00 2693 150 0.1929 0.2291 REMARK 3 10 2.2903 - 2.2112 1.00 2672 137 0.1897 0.2363 REMARK 3 11 2.2112 - 2.1421 1.00 2667 138 0.1948 0.2426 REMARK 3 12 2.1421 - 2.0809 1.00 2714 134 0.2027 0.2362 REMARK 3 13 2.0809 - 2.0261 1.00 2692 129 0.1952 0.2103 REMARK 3 14 2.0261 - 1.9767 1.00 2698 134 0.2057 0.2760 REMARK 3 15 1.9767 - 1.9317 1.00 2654 145 0.2087 0.2421 REMARK 3 16 1.9317 - 1.8906 1.00 2697 147 0.2094 0.2837 REMARK 3 17 1.8906 - 1.8528 1.00 2704 146 0.2152 0.2343 REMARK 3 18 1.8528 - 1.8178 1.00 2640 138 0.2220 0.3125 REMARK 3 19 1.8178 - 1.7854 1.00 2706 136 0.2308 0.2879 REMARK 3 20 1.7854 - 1.7551 1.00 2649 134 0.2132 0.2481 REMARK 3 21 1.7551 - 1.7268 1.00 2727 167 0.2176 0.2484 REMARK 3 22 1.7268 - 1.7002 0.95 2517 132 0.2245 0.2964 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.710 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 4324 REMARK 3 ANGLE : 1.018 5819 REMARK 3 CHIRALITY : 0.202 667 REMARK 3 PLANARITY : 0.006 733 REMARK 3 DIHEDRAL : 16.307 2686 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5Y2T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1300004570. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62190 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.37600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4EMA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES NAOH PH7.5, 17.5% PEG 8000, REMARK 280 10% DMSO, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 44.24250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -56.26700 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 184 REMARK 465 GLY A 185 REMARK 465 SER A 186 REMARK 465 SER A 187 REMARK 465 HIS A 188 REMARK 465 HIS A 189 REMARK 465 HIS A 190 REMARK 465 HIS A 191 REMARK 465 HIS A 192 REMARK 465 HIS A 193 REMARK 465 SER A 194 REMARK 465 SER A 195 REMARK 465 GLY A 196 REMARK 465 LEU A 197 REMARK 465 VAL A 198 REMARK 465 PRO A 199 REMARK 465 ARG A 200 REMARK 465 GLY A 201 REMARK 465 SER A 202 REMARK 465 ALA A 203 REMARK 465 MET A 204 REMARK 465 GLY A 205 REMARK 465 SER A 206 REMARK 465 PHE A 264 REMARK 465 LYS A 265 REMARK 465 HIS A 266 REMARK 465 ILE A 267 REMARK 465 THR A 268 REMARK 465 PRO A 269 REMARK 465 LEU A 270 REMARK 465 GLN A 271 REMARK 465 GLU A 272 REMARK 465 TYR A 477 REMARK 465 MET B 184 REMARK 465 GLY B 185 REMARK 465 SER B 186 REMARK 465 SER B 187 REMARK 465 HIS B 188 REMARK 465 HIS B 189 REMARK 465 HIS B 190 REMARK 465 HIS B 191 REMARK 465 HIS B 192 REMARK 465 HIS B 193 REMARK 465 SER B 194 REMARK 465 SER B 195 REMARK 465 GLY B 196 REMARK 465 LEU B 197 REMARK 465 VAL B 198 REMARK 465 PRO B 199 REMARK 465 ARG B 200 REMARK 465 GLY B 201 REMARK 465 LYS B 240 REMARK 465 THR B 241 REMARK 465 THR B 242 REMARK 465 ASP B 243 REMARK 465 LYS B 244 REMARK 465 PRO B 269 REMARK 465 LEU B 270 REMARK 465 GLN B 271 REMARK 465 GLU B 272 REMARK 465 GLN B 273 REMARK 465 SER B 274 REMARK 465 LEU B 476 REMARK 465 TYR B 477 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER B 202 CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU B 259 NH2 ARG B 280 1.94 REMARK 500 NZ LYS B 275 OD2 ASP B 462 1.99 REMARK 500 OE1 GLU B 448 O HOH B 601 2.10 REMARK 500 O HOH B 654 O HOH B 804 2.11 REMARK 500 O HOH B 792 O HOH B 806 2.15 REMARK 500 NH2 ARG B 357 OE1 GLU B 460 2.16 REMARK 500 O HOH A 662 O HOH A 723 2.17 REMARK 500 O HOH A 624 O HOH A 760 2.19 REMARK 500 OG SER A 394 O HOH A 601 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 207 CG GLU A 207 CD -0.106 REMARK 500 GLU A 207 CD GLU A 207 OE1 -0.224 REMARK 500 GLU A 207 CD GLU A 207 OE2 -0.181 REMARK 500 GLU A 259 CD GLU A 259 OE1 -0.079 REMARK 500 GLU A 259 CD GLU A 259 OE2 -0.073 REMARK 500 ARG A 280 CD ARG A 280 NE -0.186 REMARK 500 ARG A 280 NE ARG A 280 CZ -0.148 REMARK 500 ARG A 280 CZ ARG A 280 NH1 -0.114 REMARK 500 ARG A 280 CZ ARG A 280 NH2 -0.152 REMARK 500 GLU A 343 CD GLU A 343 OE1 -0.122 REMARK 500 GLU A 343 CD GLU A 343 OE2 -0.101 REMARK 500 GLU A 378 CG GLU A 378 CD -0.095 REMARK 500 GLU A 378 CD GLU A 378 OE1 -0.240 REMARK 500 GLU A 378 CD GLU A 378 OE2 -0.201 REMARK 500 GLN A 470 CD GLN A 470 OE1 -0.132 REMARK 500 ARG B 288 CD ARG B 288 NE -0.139 REMARK 500 ARG B 288 NE ARG B 288 CZ -0.139 REMARK 500 ARG B 288 CZ ARG B 288 NH1 -0.125 REMARK 500 ARG B 288 CZ ARG B 288 NH2 -0.124 REMARK 500 LYS B 319 CD LYS B 319 CE -0.189 REMARK 500 TYR B 327 CG TYR B 327 CD2 -0.127 REMARK 500 TYR B 327 CG TYR B 327 CD1 -0.139 REMARK 500 TYR B 327 CE1 TYR B 327 CZ -0.144 REMARK 500 TYR B 327 CZ TYR B 327 CE2 -0.143 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 280 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 461 -141.68 -85.42 REMARK 500 LYS B 458 -84.75 -83.17 REMARK 500 ASP B 462 90.06 164.22 REMARK 500 MET B 463 -94.68 -122.29 REMARK 500 HIS B 466 74.70 69.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 825 DISTANCE = 6.44 ANGSTROMS REMARK 525 HOH B 828 DISTANCE = 6.14 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8LX A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8LX B 501 DBREF 5Y2T A 207 477 UNP P37231 PPARG_HUMAN 235 505 DBREF 5Y2T B 207 477 UNP P37231 PPARG_HUMAN 235 505 SEQADV 5Y2T MET A 184 UNP P37231 EXPRESSION TAG SEQADV 5Y2T GLY A 185 UNP P37231 EXPRESSION TAG SEQADV 5Y2T SER A 186 UNP P37231 EXPRESSION TAG SEQADV 5Y2T SER A 187 UNP P37231 EXPRESSION TAG SEQADV 5Y2T HIS A 188 UNP P37231 EXPRESSION TAG SEQADV 5Y2T HIS A 189 UNP P37231 EXPRESSION TAG SEQADV 5Y2T HIS A 190 UNP P37231 EXPRESSION TAG SEQADV 5Y2T HIS A 191 UNP P37231 EXPRESSION TAG SEQADV 5Y2T HIS A 192 UNP P37231 EXPRESSION TAG SEQADV 5Y2T HIS A 193 UNP P37231 EXPRESSION TAG SEQADV 5Y2T SER A 194 UNP P37231 EXPRESSION TAG SEQADV 5Y2T SER A 195 UNP P37231 EXPRESSION TAG SEQADV 5Y2T GLY A 196 UNP P37231 EXPRESSION TAG SEQADV 5Y2T LEU A 197 UNP P37231 EXPRESSION TAG SEQADV 5Y2T VAL A 198 UNP P37231 EXPRESSION TAG SEQADV 5Y2T PRO A 199 UNP P37231 EXPRESSION TAG SEQADV 5Y2T ARG A 200 UNP P37231 EXPRESSION TAG SEQADV 5Y2T GLY A 201 UNP P37231 EXPRESSION TAG SEQADV 5Y2T SER A 202 UNP P37231 EXPRESSION TAG SEQADV 5Y2T ALA A 203 UNP P37231 EXPRESSION TAG SEQADV 5Y2T MET A 204 UNP P37231 EXPRESSION TAG SEQADV 5Y2T GLY A 205 UNP P37231 EXPRESSION TAG SEQADV 5Y2T SER A 206 UNP P37231 EXPRESSION TAG SEQADV 5Y2T MET B 184 UNP P37231 EXPRESSION TAG SEQADV 5Y2T GLY B 185 UNP P37231 EXPRESSION TAG SEQADV 5Y2T SER B 186 UNP P37231 EXPRESSION TAG SEQADV 5Y2T SER B 187 UNP P37231 EXPRESSION TAG SEQADV 5Y2T HIS B 188 UNP P37231 EXPRESSION TAG SEQADV 5Y2T HIS B 189 UNP P37231 EXPRESSION TAG SEQADV 5Y2T HIS B 190 UNP P37231 EXPRESSION TAG SEQADV 5Y2T HIS B 191 UNP P37231 EXPRESSION TAG SEQADV 5Y2T HIS B 192 UNP P37231 EXPRESSION TAG SEQADV 5Y2T HIS B 193 UNP P37231 EXPRESSION TAG SEQADV 5Y2T SER B 194 UNP P37231 EXPRESSION TAG SEQADV 5Y2T SER B 195 UNP P37231 EXPRESSION TAG SEQADV 5Y2T GLY B 196 UNP P37231 EXPRESSION TAG SEQADV 5Y2T LEU B 197 UNP P37231 EXPRESSION TAG SEQADV 5Y2T VAL B 198 UNP P37231 EXPRESSION TAG SEQADV 5Y2T PRO B 199 UNP P37231 EXPRESSION TAG SEQADV 5Y2T ARG B 200 UNP P37231 EXPRESSION TAG SEQADV 5Y2T GLY B 201 UNP P37231 EXPRESSION TAG SEQADV 5Y2T SER B 202 UNP P37231 EXPRESSION TAG SEQADV 5Y2T ALA B 203 UNP P37231 EXPRESSION TAG SEQADV 5Y2T MET B 204 UNP P37231 EXPRESSION TAG SEQADV 5Y2T GLY B 205 UNP P37231 EXPRESSION TAG SEQADV 5Y2T SER B 206 UNP P37231 EXPRESSION TAG SEQRES 1 A 294 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 294 LEU VAL PRO ARG GLY SER ALA MET GLY SER GLU SER ALA SEQRES 3 A 294 ASP LEU ARG ALA LEU ALA LYS HIS LEU TYR ASP SER TYR SEQRES 4 A 294 ILE LYS SER PHE PRO LEU THR LYS ALA LYS ALA ARG ALA SEQRES 5 A 294 ILE LEU THR GLY LYS THR THR ASP LYS SER PRO PHE VAL SEQRES 6 A 294 ILE TYR ASP MET ASN SER LEU MET MET GLY GLU ASP LYS SEQRES 7 A 294 ILE LYS PHE LYS HIS ILE THR PRO LEU GLN GLU GLN SER SEQRES 8 A 294 LYS GLU VAL ALA ILE ARG ILE PHE GLN GLY CYS GLN PHE SEQRES 9 A 294 ARG SER VAL GLU ALA VAL GLN GLU ILE THR GLU TYR ALA SEQRES 10 A 294 LYS SER ILE PRO GLY PHE VAL ASN LEU ASP LEU ASN ASP SEQRES 11 A 294 GLN VAL THR LEU LEU LYS TYR GLY VAL HIS GLU ILE ILE SEQRES 12 A 294 TYR THR MET LEU ALA SER LEU MET ASN LYS ASP GLY VAL SEQRES 13 A 294 LEU ILE SER GLU GLY GLN GLY PHE MET THR ARG GLU PHE SEQRES 14 A 294 LEU LYS SER LEU ARG LYS PRO PHE GLY ASP PHE MET GLU SEQRES 15 A 294 PRO LYS PHE GLU PHE ALA VAL LYS PHE ASN ALA LEU GLU SEQRES 16 A 294 LEU ASP ASP SER ASP LEU ALA ILE PHE ILE ALA VAL ILE SEQRES 17 A 294 ILE LEU SER GLY ASP ARG PRO GLY LEU LEU ASN VAL LYS SEQRES 18 A 294 PRO ILE GLU ASP ILE GLN ASP ASN LEU LEU GLN ALA LEU SEQRES 19 A 294 GLU LEU GLN LEU LYS LEU ASN HIS PRO GLU SER SER GLN SEQRES 20 A 294 LEU PHE ALA LYS LEU LEU GLN LYS MET THR ASP LEU ARG SEQRES 21 A 294 GLN ILE VAL THR GLU HIS VAL GLN LEU LEU GLN VAL ILE SEQRES 22 A 294 LYS LYS THR GLU THR ASP MET SER LEU HIS PRO LEU LEU SEQRES 23 A 294 GLN GLU ILE TYR LYS ASP LEU TYR SEQRES 1 B 294 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 294 LEU VAL PRO ARG GLY SER ALA MET GLY SER GLU SER ALA SEQRES 3 B 294 ASP LEU ARG ALA LEU ALA LYS HIS LEU TYR ASP SER TYR SEQRES 4 B 294 ILE LYS SER PHE PRO LEU THR LYS ALA LYS ALA ARG ALA SEQRES 5 B 294 ILE LEU THR GLY LYS THR THR ASP LYS SER PRO PHE VAL SEQRES 6 B 294 ILE TYR ASP MET ASN SER LEU MET MET GLY GLU ASP LYS SEQRES 7 B 294 ILE LYS PHE LYS HIS ILE THR PRO LEU GLN GLU GLN SER SEQRES 8 B 294 LYS GLU VAL ALA ILE ARG ILE PHE GLN GLY CYS GLN PHE SEQRES 9 B 294 ARG SER VAL GLU ALA VAL GLN GLU ILE THR GLU TYR ALA SEQRES 10 B 294 LYS SER ILE PRO GLY PHE VAL ASN LEU ASP LEU ASN ASP SEQRES 11 B 294 GLN VAL THR LEU LEU LYS TYR GLY VAL HIS GLU ILE ILE SEQRES 12 B 294 TYR THR MET LEU ALA SER LEU MET ASN LYS ASP GLY VAL SEQRES 13 B 294 LEU ILE SER GLU GLY GLN GLY PHE MET THR ARG GLU PHE SEQRES 14 B 294 LEU LYS SER LEU ARG LYS PRO PHE GLY ASP PHE MET GLU SEQRES 15 B 294 PRO LYS PHE GLU PHE ALA VAL LYS PHE ASN ALA LEU GLU SEQRES 16 B 294 LEU ASP ASP SER ASP LEU ALA ILE PHE ILE ALA VAL ILE SEQRES 17 B 294 ILE LEU SER GLY ASP ARG PRO GLY LEU LEU ASN VAL LYS SEQRES 18 B 294 PRO ILE GLU ASP ILE GLN ASP ASN LEU LEU GLN ALA LEU SEQRES 19 B 294 GLU LEU GLN LEU LYS LEU ASN HIS PRO GLU SER SER GLN SEQRES 20 B 294 LEU PHE ALA LYS LEU LEU GLN LYS MET THR ASP LEU ARG SEQRES 21 B 294 GLN ILE VAL THR GLU HIS VAL GLN LEU LEU GLN VAL ILE SEQRES 22 B 294 LYS LYS THR GLU THR ASP MET SER LEU HIS PRO LEU LEU SEQRES 23 B 294 GLN GLU ILE TYR LYS ASP LEU TYR HET 8LX A 501 34 HET 8LX B 501 34 HETNAM 8LX (5S)-5-[[4-[2-[[6-(4-METHOXYPHENOXY)PYRIMIDIN-4-YL]- HETNAM 2 8LX METHYL-AMINO]ETHOXY]PHENYL]METHYL]-1,3-THIAZOLIDINE-2, HETNAM 3 8LX 4-DIONE HETSYN 8LX LOBEGLITAZONE FORMUL 3 8LX 2(C24 H24 N4 O5 S) FORMUL 5 HOH *453(H2 O) HELIX 1 AA1 GLU A 207 PHE A 226 1 20 HELIX 2 AA2 THR A 229 GLY A 239 1 11 HELIX 3 AA3 ASP A 251 ILE A 262 1 12 HELIX 4 AA4 GLU A 276 ILE A 303 1 28 HELIX 5 AA5 GLY A 305 LEU A 309 5 5 HELIX 6 AA6 ASP A 310 LEU A 333 1 24 HELIX 7 AA7 SER A 342 GLY A 344 5 3 HELIX 8 AA8 ARG A 350 SER A 355 1 6 HELIX 9 AA9 MET A 364 ALA A 376 1 13 HELIX 10 AB1 ASP A 380 LEU A 393 1 14 HELIX 11 AB2 ASN A 402 HIS A 425 1 24 HELIX 12 AB3 GLN A 430 GLU A 460 1 31 HELIX 13 AB4 HIS A 466 LYS A 474 1 9 HELIX 14 AB5 GLY B 205 PHE B 226 1 22 HELIX 15 AB6 THR B 229 THR B 238 1 10 HELIX 16 AB7 ASP B 251 ILE B 262 1 12 HELIX 17 AB8 GLU B 276 SER B 302 1 27 HELIX 18 AB9 GLY B 305 LEU B 309 5 5 HELIX 19 AC1 ASP B 310 LEU B 333 1 24 HELIX 20 AC2 ARG B 350 SER B 355 1 6 HELIX 21 AC3 PRO B 359 PHE B 363 5 5 HELIX 22 AC4 MET B 364 ALA B 376 1 13 HELIX 23 AC5 ASP B 380 LEU B 393 1 14 HELIX 24 AC6 ASN B 402 HIS B 425 1 24 HELIX 25 AC7 GLN B 430 LYS B 458 1 29 HELIX 26 AC8 HIS B 466 TYR B 473 1 8 SHEET 1 AA1 4 PHE A 247 ILE A 249 0 SHEET 2 AA1 4 GLY A 346 THR A 349 1 O PHE A 347 N ILE A 249 SHEET 3 AA1 4 GLY A 338 ILE A 341 -1 N VAL A 339 O MET A 348 SHEET 4 AA1 4 MET A 334 ASN A 335 -1 N ASN A 335 O GLY A 338 SHEET 1 AA2 4 PHE B 247 ILE B 249 0 SHEET 2 AA2 4 GLY B 346 THR B 349 1 O PHE B 347 N ILE B 249 SHEET 3 AA2 4 GLY B 338 ILE B 341 -1 N VAL B 339 O MET B 348 SHEET 4 AA2 4 MET B 334 ASN B 335 -1 N ASN B 335 O GLY B 338 CISPEP 1 LYS A 358 PRO A 359 0 9.89 CISPEP 2 LYS B 358 PRO B 359 0 -5.17 SITE 1 AC1 15 GLY A 258 PHE A 282 GLY A 284 CYS A 285 SITE 2 AC1 15 SER A 289 HIS A 323 TYR A 327 ILE A 341 SITE 3 AC1 15 MET A 348 MET A 364 HIS A 449 TYR A 473 SITE 4 AC1 15 HOH A 637 HOH A 681 HOH A 739 SITE 1 AC2 18 LEU B 255 GLU B 259 PHE B 264 HIS B 266 SITE 2 AC2 18 ARG B 280 ILE B 281 PHE B 282 CYS B 285 SITE 3 AC2 18 GLN B 286 SER B 289 HIS B 323 TYR B 327 SITE 4 AC2 18 ILE B 341 MET B 348 PHE B 363 MET B 364 SITE 5 AC2 18 HIS B 449 LEU B 453 CRYST1 56.267 88.485 57.999 90.00 89.83 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017772 0.000000 -0.000054 0.00000 SCALE2 0.000000 0.011301 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017242 0.00000