HEADER CHAPERONE 29-JUL-17 5Y3N TITLE STRUCTURE OF TRAP1 COMPLEXED WITH DN401 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEAT SHOCK PROTEIN 75 KDA, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 60-561; COMPND 5 SYNONYM: HSP 75,TNFR-ASSOCIATED PROTEIN 1,TUMOR NECROSIS FACTOR TYPE COMPND 6 1 RECEPTOR-ASSOCIATED PROTEIN,TRAP-1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TRAP1, HSP75; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: K-12 KEYWDS TRAP1, INHIBITOR, DN401, MITOCHONDRIAL HSP90, CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR H.JEONG,H.K.PARK,S.KANG,B.H.KANG,C.LEE REVDAT 3 27-MAR-24 5Y3N 1 REMARK REVDAT 2 06-DEC-17 5Y3N 1 JRNL REVDAT 1 30-AUG-17 5Y3N 0 JRNL AUTH H.K.PARK,H.JEONG,E.KO,G.LEE,J.E.LEE,S.K.LEE,A.J.LEE,J.Y.IM, JRNL AUTH 2 S.HU,S.H.KIM,J.H.LEE,C.LEE,S.KANG,B.H.KANG JRNL TITL PARALOG SPECIFICITY DETERMINES SUBCELLULAR DISTRIBUTION, JRNL TITL 2 ACTION MECHANISM, AND ANTICANCER ACTIVITY OF TRAP1 JRNL TITL 3 INHIBITORS. JRNL REF J. MED. CHEM. V. 60 7569 2017 JRNL REFN ISSN 1520-4804 JRNL PMID 28816449 JRNL DOI 10.1021/ACS.JMEDCHEM.7B00978 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 24985 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1250 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.7086 - 4.9880 0.97 2797 148 0.2105 0.2718 REMARK 3 2 4.9880 - 3.9609 0.99 2704 142 0.1827 0.2283 REMARK 3 3 3.9609 - 3.4608 1.00 2645 139 0.1936 0.2228 REMARK 3 4 3.4608 - 3.1446 1.00 2621 139 0.2149 0.2693 REMARK 3 5 3.1446 - 2.9193 1.00 2623 137 0.2349 0.2575 REMARK 3 6 2.9193 - 2.7473 1.00 2607 138 0.2321 0.2712 REMARK 3 7 2.7473 - 2.6097 1.00 2611 137 0.2375 0.3207 REMARK 3 8 2.6097 - 2.4962 1.00 2561 134 0.2353 0.3034 REMARK 3 9 2.4962 - 2.4001 1.00 2566 136 0.2477 0.3154 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.820 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3641 REMARK 3 ANGLE : 0.782 4908 REMARK 3 CHIRALITY : 0.029 539 REMARK 3 PLANARITY : 0.003 620 REMARK 3 DIHEDRAL : 13.926 1367 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 70 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.8975 0.0069 21.9363 REMARK 3 T TENSOR REMARK 3 T11: 1.0729 T22: 0.4910 REMARK 3 T33: 0.7821 T12: -0.0708 REMARK 3 T13: -0.4504 T23: -0.0383 REMARK 3 L TENSOR REMARK 3 L11: 4.8586 L22: 3.0495 REMARK 3 L33: 3.4720 L12: 1.3219 REMARK 3 L13: 1.5961 L23: 1.3923 REMARK 3 S TENSOR REMARK 3 S11: -0.2511 S12: 0.8857 S13: -0.2084 REMARK 3 S21: -0.5521 S22: 0.3543 S23: 1.0604 REMARK 3 S31: 0.2926 S32: 0.0696 S33: -0.0144 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 94 THROUGH 297 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.4978 10.5822 20.2426 REMARK 3 T TENSOR REMARK 3 T11: 1.0090 T22: 0.4098 REMARK 3 T33: 0.5832 T12: -0.0222 REMARK 3 T13: -0.4334 T23: 0.0203 REMARK 3 L TENSOR REMARK 3 L11: 2.8302 L22: 5.2596 REMARK 3 L33: 3.0038 L12: -1.3250 REMARK 3 L13: -0.2147 L23: 0.5944 REMARK 3 S TENSOR REMARK 3 S11: 0.0771 S12: 0.3777 S13: -0.0002 REMARK 3 S21: -0.6153 S22: 0.0657 S23: 0.4848 REMARK 3 S31: 0.0562 S32: -0.0990 S33: -0.0665 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 298 THROUGH 434 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.7956 36.6602 18.7501 REMARK 3 T TENSOR REMARK 3 T11: 0.8118 T22: 0.5189 REMARK 3 T33: 0.6636 T12: -0.0403 REMARK 3 T13: -0.4432 T23: 0.2686 REMARK 3 L TENSOR REMARK 3 L11: 3.9451 L22: 2.7071 REMARK 3 L33: 4.1187 L12: -2.1098 REMARK 3 L13: 1.4192 L23: -1.8790 REMARK 3 S TENSOR REMARK 3 S11: -0.0270 S12: 0.0346 S13: -0.0680 REMARK 3 S21: 0.1467 S22: 0.3491 S23: 0.1852 REMARK 3 S31: 0.4553 S32: -0.1517 S33: -0.3592 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 435 THROUGH 552 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.3915 58.0008 11.4892 REMARK 3 T TENSOR REMARK 3 T11: 0.7273 T22: 0.8945 REMARK 3 T33: 0.9776 T12: 0.0964 REMARK 3 T13: -0.1191 T23: 0.4712 REMARK 3 L TENSOR REMARK 3 L11: 4.2865 L22: 3.0906 REMARK 3 L33: 5.1390 L12: 1.0725 REMARK 3 L13: 0.4309 L23: 0.2471 REMARK 3 S TENSOR REMARK 3 S11: 0.2289 S12: -0.4744 S13: 0.0785 REMARK 3 S21: 0.5048 S22: 0.2483 S23: 0.7455 REMARK 3 S31: -0.5071 S32: -1.3420 S33: -0.4431 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5Y3N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1300004607. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25006 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 40.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, SODIUM CACODYLATE, CALCIUM REMARK 280 ACETATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 126.07950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 34.70500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.70500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 63.03975 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.70500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 34.70500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 189.11925 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 34.70500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.70500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 63.03975 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 34.70500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.70500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 189.11925 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 126.07950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 60 REMARK 465 THR A 61 REMARK 465 GLN A 62 REMARK 465 THR A 63 REMARK 465 ALA A 64 REMARK 465 GLU A 65 REMARK 465 ASP A 66 REMARK 465 LYS A 67 REMARK 465 GLU A 68 REMARK 465 GLU A 69 REMARK 465 LEU A 172 REMARK 465 GLY A 173 REMARK 465 THR A 174 REMARK 465 ILE A 175 REMARK 465 ALA A 176 REMARK 465 ARG A 177 REMARK 465 SER A 178 REMARK 465 GLY A 179 REMARK 465 SER A 180 REMARK 465 LYS A 181 REMARK 465 ALA A 182 REMARK 465 PHE A 183 REMARK 465 LEU A 184 REMARK 465 ASP A 185 REMARK 465 ALA A 186 REMARK 465 LEU A 187 REMARK 465 GLN A 188 REMARK 465 ASN A 189 REMARK 465 GLN A 190 REMARK 465 ALA A 191 REMARK 465 GLU A 192 REMARK 465 ALA A 193 REMARK 465 SER A 194 REMARK 465 SER A 195 REMARK 465 LYS A 196 REMARK 465 ILE A 197 REMARK 465 ILE A 198 REMARK 465 GLY A 199 REMARK 465 SER A 351 REMARK 465 MET A 352 REMARK 465 PHE A 353 REMARK 465 ASP A 354 REMARK 465 VAL A 355 REMARK 465 SER A 356 REMARK 465 ARG A 357 REMARK 465 GLU A 358 REMARK 465 LEU A 359 REMARK 465 GLY A 360 REMARK 465 SER A 361 REMARK 465 LEU A 398 REMARK 465 ASN A 399 REMARK 465 LEU A 400 REMARK 465 SER A 401 REMARK 465 ARG A 402 REMARK 465 GLU A 403 REMARK 465 ASP A 553 REMARK 465 ILE A 554 REMARK 465 VAL A 555 REMARK 465 VAL A 556 REMARK 465 ASP A 557 REMARK 465 HIS A 558 REMARK 465 TYR A 559 REMARK 465 LYS A 560 REMARK 465 GLU A 561 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 203 N PHE A 205 2.07 REMARK 500 OE1 GLU A 450 O HOH A 701 2.12 REMARK 500 ND2 ASN A 496 OH TYR A 498 2.13 REMARK 500 O ALA A 465 O HOH A 702 2.14 REMARK 500 O VAL A 238 O HOH A 703 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 103 -15.61 -147.10 REMARK 500 ARG A 214 131.63 -172.78 REMARK 500 SER A 233 140.77 -170.07 REMARK 500 ALA A 409 -94.21 -164.44 REMARK 500 ALA A 474 32.36 -95.85 REMARK 500 LYS A 520 -154.62 -91.36 REMARK 500 ARG A 540 -129.59 61.18 REMARK 500 ASP A 543 -129.76 51.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8MF A 601 DBREF 5Y3N A 60 561 UNP Q12931 TRAP1_HUMAN 60 561 SEQRES 1 A 502 SER THR GLN THR ALA GLU ASP LYS GLU GLU PRO LEU HIS SEQRES 2 A 502 SER ILE ILE SER SER THR GLU SER VAL GLN GLY SER THR SEQRES 3 A 502 SER LYS HIS GLU PHE GLN ALA GLU THR LYS LYS LEU LEU SEQRES 4 A 502 ASP ILE VAL ALA ARG SER LEU TYR SER GLU LYS GLU VAL SEQRES 5 A 502 PHE ILE ARG GLU LEU ILE SER ASN ALA SER ASP ALA LEU SEQRES 6 A 502 GLU LYS LEU ARG HIS LYS LEU VAL SER ASP GLY GLN ALA SEQRES 7 A 502 LEU PRO GLU MET GLU ILE HIS LEU GLN THR ASN ALA GLU SEQRES 8 A 502 LYS GLY THR ILE THR ILE GLN ASP THR GLY ILE GLY MET SEQRES 9 A 502 THR GLN GLU GLU LEU VAL SER ASN LEU GLY THR ILE ALA SEQRES 10 A 502 ARG SER GLY SER LYS ALA PHE LEU ASP ALA LEU GLN ASN SEQRES 11 A 502 GLN ALA GLU ALA SER SER LYS ILE ILE GLY GLN PHE GLY SEQRES 12 A 502 VAL GLY PHE TYR SER ALA PHE MET VAL ALA ASP ARG VAL SEQRES 13 A 502 GLU VAL TYR SER ARG SER ALA ALA PRO GLY SER LEU GLY SEQRES 14 A 502 TYR GLN TRP LEU SER ASP GLY SER GLY VAL PHE GLU ILE SEQRES 15 A 502 ALA GLU ALA SER GLY VAL ARG THR GLY THR LYS ILE ILE SEQRES 16 A 502 ILE HIS LEU LYS SER ASP CYS LYS GLU PHE SER SER GLU SEQRES 17 A 502 ALA ARG VAL ARG ASP VAL VAL THR LYS TYR SER ASN PHE SEQRES 18 A 502 VAL SER PHE PRO LEU TYR LEU ASN GLY ARG ARG MET ASN SEQRES 19 A 502 THR LEU GLN ALA ILE TRP MET MET ASP PRO LYS ASP VAL SEQRES 20 A 502 ARG GLU TRP GLN HIS GLU GLU PHE TYR ARG TYR VAL ALA SEQRES 21 A 502 GLN ALA HIS ASP LYS PRO ARG TYR THR LEU HIS TYR LYS SEQRES 22 A 502 THR ASP ALA PRO LEU ASN ILE ARG SER ILE PHE TYR VAL SEQRES 23 A 502 PRO ASP MET LYS PRO SER MET PHE ASP VAL SER ARG GLU SEQRES 24 A 502 LEU GLY SER SER VAL ALA LEU TYR SER ARG LYS VAL LEU SEQRES 25 A 502 ILE GLN THR LYS ALA THR ASP ILE LEU PRO LYS TRP LEU SEQRES 26 A 502 ARG PHE ILE ARG GLY VAL VAL ASP SER GLU ASP ILE PRO SEQRES 27 A 502 LEU ASN LEU SER ARG GLU LEU LEU GLN GLU SER ALA LEU SEQRES 28 A 502 ILE ARG LYS LEU ARG ASP VAL LEU GLN GLN ARG LEU ILE SEQRES 29 A 502 LYS PHE PHE ILE ASP GLN SER LYS LYS ASP ALA GLU LYS SEQRES 30 A 502 TYR ALA LYS PHE PHE GLU ASP TYR GLY LEU PHE MET ARG SEQRES 31 A 502 GLU GLY ILE VAL THR ALA THR GLU GLN GLU VAL LYS GLU SEQRES 32 A 502 ASP ILE ALA LYS LEU LEU ARG TYR GLU SER SER ALA LEU SEQRES 33 A 502 PRO SER GLY GLN LEU THR SER LEU SER GLU TYR ALA SER SEQRES 34 A 502 ARG MET ARG ALA GLY THR ARG ASN ILE TYR TYR LEU CYS SEQRES 35 A 502 ALA PRO ASN ARG HIS LEU ALA GLU HIS SER PRO TYR TYR SEQRES 36 A 502 GLU ALA MET LYS LYS LYS ASP THR GLU VAL LEU PHE CYS SEQRES 37 A 502 PHE GLU GLN PHE ASP GLU LEU THR LEU LEU HIS LEU ARG SEQRES 38 A 502 GLU PHE ASP LYS LYS LYS LEU ILE SER VAL GLU THR ASP SEQRES 39 A 502 ILE VAL VAL ASP HIS TYR LYS GLU HET 8MF A 601 22 HETNAM 8MF 1-[(6-BROMANYL-1,3-BENZODIOXOL-5-YL)METHYL]-4- HETNAM 2 8MF CHLORANYL-PYRAZOLO[3,4-D]PYRIMIDIN-6-AMINE FORMUL 2 8MF C13 H9 BR CL N5 O2 FORMUL 3 HOH *58(H2 O) HELIX 1 AA1 GLN A 91 SER A 104 1 14 HELIX 2 AA2 GLU A 110 GLY A 135 1 26 HELIX 3 AA3 THR A 164 ASN A 171 1 8 HELIX 4 AA4 GLY A 202 MET A 210 5 9 HELIX 5 AA5 CYS A 261 SER A 265 5 5 HELIX 6 AA6 SER A 266 SER A 278 1 13 HELIX 7 AA7 ARG A 307 GLN A 320 1 14 HELIX 8 AA8 PRO A 381 ARG A 385 5 5 HELIX 9 AA9 LEU A 410 ASP A 433 1 24 HELIX 10 AB1 ALA A 434 ALA A 455 1 22 HELIX 11 AB2 GLU A 457 LYS A 466 1 10 HELIX 12 AB3 SER A 482 MET A 490 1 9 HELIX 13 AB4 ASN A 504 HIS A 510 1 7 HELIX 14 AB5 SER A 511 ALA A 516 1 6 HELIX 15 AB6 GLU A 529 ARG A 540 1 12 SHEET 1 AA1 9 SER A 86 GLU A 89 0 SHEET 2 AA1 9 VAL A 238 ALA A 244 -1 O PHE A 239 N HIS A 88 SHEET 3 AA1 9 GLY A 228 SER A 233 -1 N GLN A 230 O ALA A 242 SHEET 4 AA1 9 ALA A 212 ARG A 220 -1 N VAL A 215 O SER A 233 SHEET 5 AA1 9 GLY A 250 LEU A 257 -1 O ILE A 254 N GLU A 216 SHEET 6 AA1 9 THR A 153 ASP A 158 -1 N ILE A 154 O ILE A 255 SHEET 7 AA1 9 ILE A 143 ASN A 148 -1 N HIS A 144 O GLN A 157 SHEET 8 AA1 9 LEU A 285 LEU A 287 1 O TYR A 286 N ILE A 143 SHEET 9 AA1 9 ARG A 290 ARG A 291 -1 O ARG A 290 N LEU A 287 SHEET 1 AA2 5 PRO A 325 THR A 333 0 SHEET 2 AA2 5 ILE A 339 PRO A 346 -1 O VAL A 345 N ARG A 326 SHEET 3 AA2 5 ARG A 388 ASP A 392 -1 O ASP A 392 N ARG A 340 SHEET 4 AA2 5 ALA A 364 SER A 367 1 N TYR A 366 O VAL A 391 SHEET 5 AA2 5 VAL A 370 GLN A 373 -1 O ILE A 372 N LEU A 365 SHEET 1 AA3 5 LEU A 480 THR A 481 0 SHEET 2 AA3 5 TYR A 470 SER A 472 -1 N TYR A 470 O THR A 481 SHEET 3 AA3 5 LEU A 525 CYS A 527 -1 O PHE A 526 N GLU A 471 SHEET 4 AA3 5 ILE A 497 CYS A 501 1 N TYR A 498 O LEU A 525 SHEET 5 AA3 5 LEU A 547 SER A 549 1 O ILE A 548 N ILE A 497 SITE 1 AC1 11 ALA A 123 ASP A 158 ILE A 161 GLY A 162 SITE 2 AC1 11 MET A 163 PHE A 201 PHE A 205 TRP A 231 SITE 3 AC1 11 THR A 251 HOH A 720 HOH A 726 CRYST1 69.410 69.410 252.159 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014407 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014407 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003966 0.00000