HEADER TRANSFERASE 02-AUG-17 5Y4A TITLE CADMIUM DIRECTED ASSEMBLY OF ADENINE PHOSPHORIBOSYLTRANSFERASE FROM TITLE 2 YERSINIA PSEUDOTUBERCULOSIS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENINE PHOSPHORIBOSYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: APRT; COMPND 5 EC: 2.4.2.7; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PSEUDOTUBERCULOSIS SEROTYPE I (STRAIN SOURCE 3 IP32953); SOURCE 4 ORGANISM_TAXID: 273123; SOURCE 5 STRAIN: IP32953; SOURCE 6 GENE: APT, YPTB0991; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_PLASMID: LIC-PET30A KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.C.PAVITHRA,U.A.RAMAGOPAL REVDAT 2 27-MAR-24 5Y4A 1 REMARK LINK REVDAT 1 08-AUG-18 5Y4A 0 JRNL AUTH G.C.PAVITHRA,U.A.RAMAGOPAL JRNL TITL CADMIUM DIRECTED ASSEMBLY OF ADENINE JRNL TITL 2 PHOSPHORIBOSYLTRANSFERASE FROM YERSINIA PSEUDOTUBERCULOSIS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.34 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.34 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 16793 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 898 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2715 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 46 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.29000 REMARK 3 B22 (A**2) : -0.08000 REMARK 3 B33 (A**2) : 0.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.337 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.251 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.164 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.054 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5Y4A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1300004636. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.953 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18401 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.20 REMARK 200 R MERGE FOR SHELL (I) : 0.63400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20%(V/V) 1,4-BUTANEDIOL, 0.1M MES:NAOH REMARK 280 PH 6.0, 0.2M LITHIUM SULFATE WITH 5MM CADMIUM CHLORIDE AND REMARK 280 CALCIUM CHLORIDE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.10800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.19400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.77350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.19400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.10800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.77350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -124.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 VAL A 3 REMARK 465 SER A 4 REMARK 465 ALA A 5 REMARK 465 SER A 6 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 LYS B 27 REMARK 465 ALA B 28 REMARK 465 GLY B 29 REMARK 465 GLU B 107 REMARK 465 TYR B 108 REMARK 465 GLY B 109 REMARK 465 HIS B 187 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 7 CG CD CE NZ REMARK 470 VAL B 3 CG1 CG2 REMARK 470 LYS B 7 CG CD CE NZ REMARK 470 ILE B 30 CG1 CG2 CD1 REMARK 470 GLN B 173 CD OE1 NE2 REMARK 470 GLN B 174 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 102 CD GLU A 102 OE1 -0.069 REMARK 500 GLU A 164 CD GLU A 164 OE2 0.078 REMARK 500 SER B 183 CB SER B 183 OG -0.087 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 33 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 ASP A 34 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ASP A 111 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 185 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG B 70 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 91 154.43 -48.53 REMARK 500 ALA A 134 -110.10 -110.89 REMARK 500 ASP B 24 -8.57 60.63 REMARK 500 ALA B 134 -104.99 -95.54 REMARK 500 GLN B 173 31.75 -74.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 405 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 102 OE1 REMARK 620 2 GLU A 102 OE2 49.9 REMARK 620 3 GLU A 164 OE2 46.5 91.1 REMARK 620 4 ASP A 185 OD1 42.9 86.4 4.7 REMARK 620 5 ASP A 185 OD2 41.1 85.9 5.5 2.9 REMARK 620 6 HIS A 187 ND1 43.7 90.0 4.8 6.8 5.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 117 O REMARK 620 2 ILE A 120 O 86.2 REMARK 620 3 HOH A 517 O 129.2 83.6 REMARK 620 4 HOH A 528 O 85.2 155.3 84.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 404 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 130 OD1 REMARK 620 2 ASP A 130 OD2 51.6 REMARK 620 3 ASP A 131 OD1 79.1 77.4 REMARK 620 4 HOH A 508 O 88.2 139.7 94.2 REMARK 620 5 HOH A 509 O 120.2 71.4 107.0 146.8 REMARK 620 6 HOH A 518 O 87.0 97.9 165.3 80.3 84.2 REMARK 620 7 HOH A 520 O 164.0 140.4 92.9 78.5 75.2 99.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 202 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 117 O REMARK 620 2 ILE B 120 O 85.2 REMARK 620 3 HOH B 306 O 134.5 98.1 REMARK 620 4 HOH B 316 O 88.3 172.8 88.6 REMARK 620 5 HOH B 317 O 93.7 93.0 131.1 84.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 204 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 130 OD1 REMARK 620 2 ASP B 131 OD1 85.8 REMARK 620 3 HOH B 303 O 88.5 171.9 REMARK 620 4 HOH B 304 O 85.6 101.6 83.7 REMARK 620 5 HOH B 307 O 160.5 80.7 106.2 83.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 205 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 155 NE2 REMARK 620 2 HOH B 318 O 109.6 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD B 205 DBREF 5Y4A A 1 187 UNP Q66DQ2 APT_YERPS 1 187 DBREF 5Y4A B 1 187 UNP Q66DQ2 APT_YERPS 1 187 SEQRES 1 A 187 MET THR VAL SER ALA SER LYS THR ALA GLN GLN LEU LYS SEQRES 2 A 187 TYR ILE LYS ASP SER ILE LYS THR ILE PRO ASP TYR PRO SEQRES 3 A 187 LYS ALA GLY ILE LEU PHE ARG ASP VAL THR SER LEU LEU SEQRES 4 A 187 GLU ASN PRO LYS ALA TYR SER ALA SER ILE GLU LEU LEU SEQRES 5 A 187 SER GLU HIS TYR SER GLU SER GLY VAL THR LYS VAL VAL SEQRES 6 A 187 GLY THR GLU ALA ARG GLY PHE LEU PHE GLY ALA PRO VAL SEQRES 7 A 187 ALA LEU ALA LEU GLY VAL GLY PHE VAL PRO VAL ARG LYS SEQRES 8 A 187 PRO GLY LYS LEU PRO ARG GLU THR ILE SER GLU SER TYR SEQRES 9 A 187 GLU LEU GLU TYR GLY THR ASP THR LEU GLU ILE HIS THR SEQRES 10 A 187 ASP SER ILE GLN PRO GLY ASP LYS VAL LEU VAL VAL ASP SEQRES 11 A 187 ASP LEU LEU ALA THR GLY GLY THR ILE GLU ALA THR VAL SEQRES 12 A 187 LYS LEU ILE ARG ARG LEU GLY GLY GLU VAL VAL HIS ALA SEQRES 13 A 187 ALA PHE ILE ILE ASN LEU PRO GLU LEU GLY GLY GLU ALA SEQRES 14 A 187 ARG LEU THR GLN GLN GLY ILE HIS CYS TYR SER LEU VAL SEQRES 15 A 187 SER PHE ASP GLY HIS SEQRES 1 B 187 MET THR VAL SER ALA SER LYS THR ALA GLN GLN LEU LYS SEQRES 2 B 187 TYR ILE LYS ASP SER ILE LYS THR ILE PRO ASP TYR PRO SEQRES 3 B 187 LYS ALA GLY ILE LEU PHE ARG ASP VAL THR SER LEU LEU SEQRES 4 B 187 GLU ASN PRO LYS ALA TYR SER ALA SER ILE GLU LEU LEU SEQRES 5 B 187 SER GLU HIS TYR SER GLU SER GLY VAL THR LYS VAL VAL SEQRES 6 B 187 GLY THR GLU ALA ARG GLY PHE LEU PHE GLY ALA PRO VAL SEQRES 7 B 187 ALA LEU ALA LEU GLY VAL GLY PHE VAL PRO VAL ARG LYS SEQRES 8 B 187 PRO GLY LYS LEU PRO ARG GLU THR ILE SER GLU SER TYR SEQRES 9 B 187 GLU LEU GLU TYR GLY THR ASP THR LEU GLU ILE HIS THR SEQRES 10 B 187 ASP SER ILE GLN PRO GLY ASP LYS VAL LEU VAL VAL ASP SEQRES 11 B 187 ASP LEU LEU ALA THR GLY GLY THR ILE GLU ALA THR VAL SEQRES 12 B 187 LYS LEU ILE ARG ARG LEU GLY GLY GLU VAL VAL HIS ALA SEQRES 13 B 187 ALA PHE ILE ILE ASN LEU PRO GLU LEU GLY GLY GLU ALA SEQRES 14 B 187 ARG LEU THR GLN GLN GLY ILE HIS CYS TYR SER LEU VAL SEQRES 15 B 187 SER PHE ASP GLY HIS HET NA A 401 1 HET SO4 A 402 5 HET SO4 A 403 5 HET CD A 404 1 HET CD A 405 1 HET CD B 201 1 HET NA B 202 1 HET SO4 B 203 5 HET CD B 204 1 HET CD B 205 1 HETNAM NA SODIUM ION HETNAM SO4 SULFATE ION HETNAM CD CADMIUM ION FORMUL 3 NA 2(NA 1+) FORMUL 4 SO4 3(O4 S 2-) FORMUL 6 CD 5(CD 2+) FORMUL 13 HOH *46(H2 O) HELIX 1 AA1 LYS A 7 ILE A 19 1 13 HELIX 2 AA2 VAL A 35 GLU A 40 1 6 HELIX 3 AA3 ASN A 41 TYR A 56 1 16 HELIX 4 AA4 SER A 57 GLY A 60 5 4 HELIX 5 AA5 GLY A 71 GLY A 83 1 13 HELIX 6 AA6 ASP A 118 ILE A 120 5 3 HELIX 7 AA7 GLY A 136 LEU A 149 1 14 HELIX 8 AA8 PRO A 163 LEU A 165 5 3 HELIX 9 AA9 GLY A 166 GLN A 174 1 9 HELIX 10 AB1 SER B 4 ILE B 19 1 16 HELIX 11 AB2 VAL B 35 GLU B 40 1 6 HELIX 12 AB3 ASN B 41 SER B 57 1 17 HELIX 13 AB4 GLY B 71 GLY B 83 1 13 HELIX 14 AB5 ASP B 118 ILE B 120 5 3 HELIX 15 AB6 GLY B 136 LEU B 149 1 14 HELIX 16 AB7 PRO B 163 LEU B 165 5 3 HELIX 17 AB8 GLY B 166 GLN B 173 1 8 SHEET 1 AA1 2 LYS A 20 PRO A 23 0 SHEET 2 AA1 2 LEU A 31 ASP A 34 -1 O PHE A 32 N ILE A 22 SHEET 1 AA2 5 GLY A 85 VAL A 89 0 SHEET 2 AA2 5 LYS A 63 THR A 67 1 N VAL A 64 O VAL A 87 SHEET 3 AA2 5 LYS A 125 LEU A 133 1 O VAL A 129 N VAL A 65 SHEET 4 AA2 5 GLU A 152 ASN A 161 1 O ILE A 160 N ASP A 131 SHEET 5 AA2 5 HIS A 177 SER A 183 1 O HIS A 177 N VAL A 154 SHEET 1 AA3 2 THR A 99 GLU A 105 0 SHEET 2 AA3 2 THR A 110 HIS A 116 -1 O LEU A 113 N GLU A 102 SHEET 1 AA4 2 LYS B 20 PRO B 23 0 SHEET 2 AA4 2 LEU B 31 ASP B 34 -1 O PHE B 32 N ILE B 22 SHEET 1 AA5 5 GLY B 85 VAL B 89 0 SHEET 2 AA5 5 LYS B 63 THR B 67 1 N VAL B 64 O VAL B 87 SHEET 3 AA5 5 LYS B 125 LEU B 133 1 O LEU B 127 N VAL B 65 SHEET 4 AA5 5 GLU B 152 ASN B 161 1 O GLU B 152 N VAL B 126 SHEET 5 AA5 5 HIS B 177 SER B 183 1 O HIS B 177 N VAL B 154 SHEET 1 AA6 2 THR B 99 TYR B 104 0 SHEET 2 AA6 2 ASP B 111 HIS B 116 -1 O ASP B 111 N TYR B 104 LINK OE1 GLU A 102 CD CD A 405 1555 1555 2.57 LINK OE2 GLU A 102 CD CD A 405 1555 1555 2.48 LINK O THR A 117 NA NA A 401 1555 1555 2.31 LINK O ILE A 120 NA NA A 401 1555 1555 2.30 LINK OD1 ASP A 130 CD CD A 404 1555 1555 2.47 LINK OD2 ASP A 130 CD CD A 404 1555 1555 2.56 LINK OD1 ASP A 131 CD CD A 404 1555 1555 2.49 LINK OE2 GLU A 164 CD CD A 405 1555 4555 1.94 LINK ND1BHIS A 177 CD CD B 201 1555 3555 2.48 LINK OD1 ASP A 185 CD CD A 405 1555 4555 2.23 LINK OD2 ASP A 185 CD CD A 405 1555 4555 2.15 LINK ND1 HIS A 187 CD CD A 405 1555 4555 1.98 LINK NA NA A 401 O HOH A 517 1555 1555 2.41 LINK NA NA A 401 O HOH A 528 1555 1555 2.52 LINK CD CD A 404 O HOH A 508 1555 1555 2.63 LINK CD CD A 404 O HOH A 509 1555 1555 2.68 LINK CD CD A 404 O HOH A 518 1555 1555 2.39 LINK CD CD A 404 O HOH A 520 1555 1555 2.32 LINK O THR B 117 NA NA B 202 1555 1555 2.42 LINK O ILE B 120 NA NA B 202 1555 1555 2.33 LINK OD1 ASP B 130 CD CD B 204 1555 1555 2.38 LINK OD1 ASP B 131 CD CD B 204 1555 1555 2.50 LINK NE2 HIS B 155 CD CD B 205 1555 1555 2.26 LINK NA NA B 202 O HOH B 306 1555 1555 2.34 LINK NA NA B 202 O HOH B 316 1555 1555 2.13 LINK NA NA B 202 O HOH B 317 1555 1555 2.55 LINK CD CD B 204 O HOH B 303 1555 1555 2.59 LINK CD CD B 204 O HOH B 304 1555 1555 2.58 LINK CD CD B 204 O HOH B 307 1555 1555 2.31 LINK CD CD B 205 O HOH B 318 1555 1555 2.57 CISPEP 1 TYR A 25 PRO A 26 0 -4.28 CISPEP 2 GLU A 68 ALA A 69 0 -4.10 CISPEP 3 TYR B 25 PRO B 26 0 -10.37 CISPEP 4 GLU B 68 ALA B 69 0 -1.99 SITE 1 AC1 4 THR A 117 ILE A 120 HOH A 517 HOH A 528 SITE 1 AC2 6 ALA A 69 ARG A 70 LYS A 91 HOH A 508 SITE 2 AC2 6 HOH A 520 ARG B 90 SITE 1 AC3 7 ALA A 134 THR A 135 GLY A 136 GLY A 137 SITE 2 AC3 7 THR A 138 ILE A 139 HOH A 509 SITE 1 AC4 7 THR A 67 ASP A 130 ASP A 131 HOH A 508 SITE 2 AC4 7 HOH A 509 HOH A 518 HOH A 520 SITE 1 AC5 4 GLU A 102 GLU A 164 ASP A 185 HIS A 187 SITE 1 AC6 3 HIS A 155 HIS A 177 GLU B 54 SITE 1 AC7 5 THR B 117 ILE B 120 HOH B 306 HOH B 316 SITE 2 AC7 5 HOH B 317 SITE 1 AC8 7 ARG A 90 GLU B 68 ALA B 69 ARG B 70 SITE 2 AC8 7 LYS B 91 HOH B 304 HOH B 307 SITE 1 AC9 6 ASP B 130 ASP B 131 HOH B 303 HOH B 304 SITE 2 AC9 6 HOH B 307 HOH B 312 SITE 1 AD1 4 GLU A 58 HIS B 155 HIS B 177 HOH B 318 CRYST1 60.216 77.547 90.388 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016607 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012895 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011063 0.00000