data_5Y59 # _entry.id 5Y59 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5Y59 pdb_00005y59 10.2210/pdb5y59/pdb WWPDB D_1300004695 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-12-20 2 'Structure model' 1 1 2018-02-07 3 'Structure model' 1 2 2024-03-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' database_2 6 3 'Structure model' diffrn_radiation_wavelength # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_abbrev' 2 2 'Structure model' '_citation.journal_id_CSD' 3 2 'Structure model' '_citation.journal_id_ISSN' 4 2 'Structure model' '_citation.journal_volume' 5 2 'Structure model' '_citation.page_first' 6 2 'Structure model' '_citation.page_last' 7 2 'Structure model' '_citation.pdbx_database_id_DOI' 8 2 'Structure model' '_citation.pdbx_database_id_PubMed' 9 2 'Structure model' '_citation.title' 10 2 'Structure model' '_citation.year' 11 3 'Structure model' '_database_2.pdbx_DOI' 12 3 'Structure model' '_database_2.pdbx_database_accession' 13 3 'Structure model' '_diffrn_radiation_wavelength.wavelength' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5Y59 _pdbx_database_status.recvd_initial_deposition_date 2017-08-08 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.details . _pdbx_database_related.db_id 5Y58 _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Chen, H.' 1 ? 'Xue, J.' 2 ? 'Wu, J.' 3 ? 'Lei, M.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Cell _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1097-4172 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 172 _citation.language ? _citation.page_first 331 _citation.page_last 343.e13 _citation.title 'Structural Insights into Yeast Telomerase Recruitment to Telomeres' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.cell.2017.12.008 _citation.pdbx_database_id_PubMed 29290466 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chen, H.' 1 ? primary 'Xue, J.' 2 ? primary 'Churikov, D.' 3 ? primary 'Hass, E.P.' 4 ? primary 'Shi, S.' 5 ? primary 'Lemon, L.D.' 6 ? primary 'Luciano, P.' 7 ? primary 'Bertuch, A.A.' 8 ? primary 'Zappulla, D.C.' 9 ? primary 'Geli, V.' 10 ? primary 'Wu, J.' 11 ? primary 'Lei, M.' 12 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'ATP-dependent DNA helicase II subunit 2' 22759.916 1 3.6.4.12 ? 'vWA domain, UNP residues 2-200' ? 2 polymer man Sir4p 1362.640 1 ? ? 'Ku binding motif, UNP residues 104-115' ? 3 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 4 water nat water 18.015 35 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'ATP-dependent DNA helicase II subunit Ku80,High affinity DNA-binding factor subunit 2,Yeast Ku80' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;SSESTTFIVDVSPSMMKNNNVSKSMAYLEYTLLNKSKKSRKTDWISCYLANCPVSENSQEIPNVFQIQSFLAPVTTTATI GFIKRLKQYCDQHSHDSSNEGLQSMIQCLLVVSLDIKQQFQARKILKQIVVFTDNLDDLDITDEEIDLLTEELSTRIILI DCGKDTQEERKKSNWLKLVEAIPNSRIYNMNELLVEITS ; ;SSESTTFIVDVSPSMMKNNNVSKSMAYLEYTLLNKSKKSRKTDWISCYLANCPVSENSQEIPNVFQIQSFLAPVTTTATI GFIKRLKQYCDQHSHDSSNEGLQSMIQCLLVVSLDIKQQFQARKILKQIVVFTDNLDDLDITDEEIDLLTEELSTRIILI DCGKDTQEERKKSNWLKLVEAIPNSRIYNMNELLVEITS ; B ? 2 'polypeptide(L)' no no NSKLLSLLRSKT NSKLLSLLRSKT C ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'SULFATE ION' SO4 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 SER n 1 3 GLU n 1 4 SER n 1 5 THR n 1 6 THR n 1 7 PHE n 1 8 ILE n 1 9 VAL n 1 10 ASP n 1 11 VAL n 1 12 SER n 1 13 PRO n 1 14 SER n 1 15 MET n 1 16 MET n 1 17 LYS n 1 18 ASN n 1 19 ASN n 1 20 ASN n 1 21 VAL n 1 22 SER n 1 23 LYS n 1 24 SER n 1 25 MET n 1 26 ALA n 1 27 TYR n 1 28 LEU n 1 29 GLU n 1 30 TYR n 1 31 THR n 1 32 LEU n 1 33 LEU n 1 34 ASN n 1 35 LYS n 1 36 SER n 1 37 LYS n 1 38 LYS n 1 39 SER n 1 40 ARG n 1 41 LYS n 1 42 THR n 1 43 ASP n 1 44 TRP n 1 45 ILE n 1 46 SER n 1 47 CYS n 1 48 TYR n 1 49 LEU n 1 50 ALA n 1 51 ASN n 1 52 CYS n 1 53 PRO n 1 54 VAL n 1 55 SER n 1 56 GLU n 1 57 ASN n 1 58 SER n 1 59 GLN n 1 60 GLU n 1 61 ILE n 1 62 PRO n 1 63 ASN n 1 64 VAL n 1 65 PHE n 1 66 GLN n 1 67 ILE n 1 68 GLN n 1 69 SER n 1 70 PHE n 1 71 LEU n 1 72 ALA n 1 73 PRO n 1 74 VAL n 1 75 THR n 1 76 THR n 1 77 THR n 1 78 ALA n 1 79 THR n 1 80 ILE n 1 81 GLY n 1 82 PHE n 1 83 ILE n 1 84 LYS n 1 85 ARG n 1 86 LEU n 1 87 LYS n 1 88 GLN n 1 89 TYR n 1 90 CYS n 1 91 ASP n 1 92 GLN n 1 93 HIS n 1 94 SER n 1 95 HIS n 1 96 ASP n 1 97 SER n 1 98 SER n 1 99 ASN n 1 100 GLU n 1 101 GLY n 1 102 LEU n 1 103 GLN n 1 104 SER n 1 105 MET n 1 106 ILE n 1 107 GLN n 1 108 CYS n 1 109 LEU n 1 110 LEU n 1 111 VAL n 1 112 VAL n 1 113 SER n 1 114 LEU n 1 115 ASP n 1 116 ILE n 1 117 LYS n 1 118 GLN n 1 119 GLN n 1 120 PHE n 1 121 GLN n 1 122 ALA n 1 123 ARG n 1 124 LYS n 1 125 ILE n 1 126 LEU n 1 127 LYS n 1 128 GLN n 1 129 ILE n 1 130 VAL n 1 131 VAL n 1 132 PHE n 1 133 THR n 1 134 ASP n 1 135 ASN n 1 136 LEU n 1 137 ASP n 1 138 ASP n 1 139 LEU n 1 140 ASP n 1 141 ILE n 1 142 THR n 1 143 ASP n 1 144 GLU n 1 145 GLU n 1 146 ILE n 1 147 ASP n 1 148 LEU n 1 149 LEU n 1 150 THR n 1 151 GLU n 1 152 GLU n 1 153 LEU n 1 154 SER n 1 155 THR n 1 156 ARG n 1 157 ILE n 1 158 ILE n 1 159 LEU n 1 160 ILE n 1 161 ASP n 1 162 CYS n 1 163 GLY n 1 164 LYS n 1 165 ASP n 1 166 THR n 1 167 GLN n 1 168 GLU n 1 169 GLU n 1 170 ARG n 1 171 LYS n 1 172 LYS n 1 173 SER n 1 174 ASN n 1 175 TRP n 1 176 LEU n 1 177 LYS n 1 178 LEU n 1 179 VAL n 1 180 GLU n 1 181 ALA n 1 182 ILE n 1 183 PRO n 1 184 ASN n 1 185 SER n 1 186 ARG n 1 187 ILE n 1 188 TYR n 1 189 ASN n 1 190 MET n 1 191 ASN n 1 192 GLU n 1 193 LEU n 1 194 LEU n 1 195 VAL n 1 196 GLU n 1 197 ILE n 1 198 THR n 1 199 SER n 2 1 ASN n 2 2 SER n 2 3 LYS n 2 4 LEU n 2 5 LEU n 2 6 SER n 2 7 LEU n 2 8 LEU n 2 9 ARG n 2 10 SER n 2 11 LYS n 2 12 THR n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 199 ;Baker's yeast ; ? 'YKU80, HDF2, YMR106C, YM9718.05C' ? 'ATCC 204508 / S288c' ? ? ? ? 'Saccharomyces cerevisiae (strain ATCC 204508 / S288c)' 559292 ? ? ? ? ? ? ? ? 'Escherichia coli BL21(DE3)' 469008 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? plasmid ? ? ? pET28a ? ? 2 1 sample 'Biological sequence' 1 12 ;Baker's yeast ; ? VL3_0944 ? 'Zymaflore VL3' ? ? ? ? 'Saccharomyces cerevisiae' 764100 ? ? ? ? ? ? ? ? 'Escherichia coli BL21(DE3)' 469008 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? plasmid ? ? ? pET28a ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 2 2 SER SER B . n A 1 2 SER 2 3 3 SER SER B . n A 1 3 GLU 3 4 4 GLU GLU B . n A 1 4 SER 4 5 5 SER SER B . n A 1 5 THR 5 6 6 THR THR B . n A 1 6 THR 6 7 7 THR THR B . n A 1 7 PHE 7 8 8 PHE PHE B . n A 1 8 ILE 8 9 9 ILE ILE B . n A 1 9 VAL 9 10 10 VAL VAL B . n A 1 10 ASP 10 11 11 ASP ASP B . n A 1 11 VAL 11 12 12 VAL VAL B . n A 1 12 SER 12 13 13 SER SER B . n A 1 13 PRO 13 14 14 PRO PRO B . n A 1 14 SER 14 15 15 SER SER B . n A 1 15 MET 15 16 16 MET MET B . n A 1 16 MET 16 17 17 MET MET B . n A 1 17 LYS 17 18 18 LYS LYS B . n A 1 18 ASN 18 19 19 ASN ASN B . n A 1 19 ASN 19 20 20 ASN ASN B . n A 1 20 ASN 20 21 21 ASN ASN B . n A 1 21 VAL 21 22 22 VAL VAL B . n A 1 22 SER 22 23 23 SER SER B . n A 1 23 LYS 23 24 24 LYS LYS B . n A 1 24 SER 24 25 25 SER SER B . n A 1 25 MET 25 26 26 MET MET B . n A 1 26 ALA 26 27 27 ALA ALA B . n A 1 27 TYR 27 28 28 TYR TYR B . n A 1 28 LEU 28 29 29 LEU LEU B . n A 1 29 GLU 29 30 30 GLU GLU B . n A 1 30 TYR 30 31 31 TYR TYR B . n A 1 31 THR 31 32 32 THR THR B . n A 1 32 LEU 32 33 33 LEU LEU B . n A 1 33 LEU 33 34 34 LEU LEU B . n A 1 34 ASN 34 35 35 ASN ASN B . n A 1 35 LYS 35 36 36 LYS LYS B . n A 1 36 SER 36 37 37 SER SER B . n A 1 37 LYS 37 38 38 LYS LYS B . n A 1 38 LYS 38 39 39 LYS LYS B . n A 1 39 SER 39 40 40 SER SER B . n A 1 40 ARG 40 41 41 ARG ARG B . n A 1 41 LYS 41 42 42 LYS LYS B . n A 1 42 THR 42 43 43 THR THR B . n A 1 43 ASP 43 44 44 ASP ASP B . n A 1 44 TRP 44 45 45 TRP TRP B . n A 1 45 ILE 45 46 46 ILE ILE B . n A 1 46 SER 46 47 47 SER SER B . n A 1 47 CYS 47 48 48 CYS CYS B . n A 1 48 TYR 48 49 49 TYR TYR B . n A 1 49 LEU 49 50 50 LEU LEU B . n A 1 50 ALA 50 51 51 ALA ALA B . n A 1 51 ASN 51 52 52 ASN ASN B . n A 1 52 CYS 52 53 53 CYS CYS B . n A 1 53 PRO 53 54 54 PRO PRO B . n A 1 54 VAL 54 55 55 VAL VAL B . n A 1 55 SER 55 56 56 SER SER B . n A 1 56 GLU 56 57 57 GLU GLU B . n A 1 57 ASN 57 58 58 ASN ASN B . n A 1 58 SER 58 59 59 SER SER B . n A 1 59 GLN 59 60 60 GLN GLN B . n A 1 60 GLU 60 61 61 GLU GLU B . n A 1 61 ILE 61 62 62 ILE ILE B . n A 1 62 PRO 62 63 63 PRO PRO B . n A 1 63 ASN 63 64 64 ASN ASN B . n A 1 64 VAL 64 65 65 VAL VAL B . n A 1 65 PHE 65 66 66 PHE PHE B . n A 1 66 GLN 66 67 67 GLN GLN B . n A 1 67 ILE 67 68 68 ILE ILE B . n A 1 68 GLN 68 69 69 GLN GLN B . n A 1 69 SER 69 70 70 SER SER B . n A 1 70 PHE 70 71 71 PHE PHE B . n A 1 71 LEU 71 72 72 LEU LEU B . n A 1 72 ALA 72 73 73 ALA ALA B . n A 1 73 PRO 73 74 74 PRO PRO B . n A 1 74 VAL 74 75 75 VAL VAL B . n A 1 75 THR 75 76 76 THR THR B . n A 1 76 THR 76 77 77 THR THR B . n A 1 77 THR 77 78 78 THR THR B . n A 1 78 ALA 78 79 79 ALA ALA B . n A 1 79 THR 79 80 80 THR THR B . n A 1 80 ILE 80 81 81 ILE ILE B . n A 1 81 GLY 81 82 82 GLY GLY B . n A 1 82 PHE 82 83 83 PHE PHE B . n A 1 83 ILE 83 84 84 ILE ILE B . n A 1 84 LYS 84 85 85 LYS LYS B . n A 1 85 ARG 85 86 86 ARG ARG B . n A 1 86 LEU 86 87 87 LEU LEU B . n A 1 87 LYS 87 88 88 LYS LYS B . n A 1 88 GLN 88 89 89 GLN GLN B . n A 1 89 TYR 89 90 90 TYR TYR B . n A 1 90 CYS 90 91 91 CYS CYS B . n A 1 91 ASP 91 92 92 ASP ASP B . n A 1 92 GLN 92 93 93 GLN GLN B . n A 1 93 HIS 93 94 94 HIS HIS B . n A 1 94 SER 94 95 95 SER SER B . n A 1 95 HIS 95 96 96 HIS HIS B . n A 1 96 ASP 96 97 97 ASP ASP B . n A 1 97 SER 97 98 98 SER SER B . n A 1 98 SER 98 99 99 SER SER B . n A 1 99 ASN 99 100 100 ASN ASN B . n A 1 100 GLU 100 101 101 GLU GLU B . n A 1 101 GLY 101 102 102 GLY GLY B . n A 1 102 LEU 102 103 103 LEU LEU B . n A 1 103 GLN 103 104 104 GLN GLN B . n A 1 104 SER 104 105 105 SER SER B . n A 1 105 MET 105 106 106 MET MET B . n A 1 106 ILE 106 107 107 ILE ILE B . n A 1 107 GLN 107 108 108 GLN GLN B . n A 1 108 CYS 108 109 109 CYS CYS B . n A 1 109 LEU 109 110 110 LEU LEU B . n A 1 110 LEU 110 111 111 LEU LEU B . n A 1 111 VAL 111 112 112 VAL VAL B . n A 1 112 VAL 112 113 113 VAL VAL B . n A 1 113 SER 113 114 114 SER SER B . n A 1 114 LEU 114 115 115 LEU LEU B . n A 1 115 ASP 115 116 116 ASP ASP B . n A 1 116 ILE 116 117 117 ILE ILE B . n A 1 117 LYS 117 118 118 LYS LYS B . n A 1 118 GLN 118 119 119 GLN GLN B . n A 1 119 GLN 119 120 120 GLN GLN B . n A 1 120 PHE 120 121 121 PHE PHE B . n A 1 121 GLN 121 122 122 GLN GLN B . n A 1 122 ALA 122 123 123 ALA ALA B . n A 1 123 ARG 123 124 124 ARG ARG B . n A 1 124 LYS 124 125 125 LYS LYS B . n A 1 125 ILE 125 126 126 ILE ILE B . n A 1 126 LEU 126 127 127 LEU LEU B . n A 1 127 LYS 127 128 128 LYS LYS B . n A 1 128 GLN 128 129 129 GLN GLN B . n A 1 129 ILE 129 130 130 ILE ILE B . n A 1 130 VAL 130 131 131 VAL VAL B . n A 1 131 VAL 131 132 132 VAL VAL B . n A 1 132 PHE 132 133 133 PHE PHE B . n A 1 133 THR 133 134 134 THR THR B . n A 1 134 ASP 134 135 135 ASP ASP B . n A 1 135 ASN 135 136 136 ASN ASN B . n A 1 136 LEU 136 137 137 LEU LEU B . n A 1 137 ASP 137 138 138 ASP ASP B . n A 1 138 ASP 138 139 139 ASP ASP B . n A 1 139 LEU 139 140 140 LEU LEU B . n A 1 140 ASP 140 141 141 ASP ASP B . n A 1 141 ILE 141 142 142 ILE ILE B . n A 1 142 THR 142 143 ? ? ? B . n A 1 143 ASP 143 144 ? ? ? B . n A 1 144 GLU 144 145 145 GLU GLU B . n A 1 145 GLU 145 146 146 GLU GLU B . n A 1 146 ILE 146 147 147 ILE ILE B . n A 1 147 ASP 147 148 148 ASP ASP B . n A 1 148 LEU 148 149 149 LEU LEU B . n A 1 149 LEU 149 150 150 LEU LEU B . n A 1 150 THR 150 151 151 THR THR B . n A 1 151 GLU 151 152 152 GLU GLU B . n A 1 152 GLU 152 153 153 GLU GLU B . n A 1 153 LEU 153 154 154 LEU LEU B . n A 1 154 SER 154 155 155 SER SER B . n A 1 155 THR 155 156 156 THR THR B . n A 1 156 ARG 156 157 157 ARG ARG B . n A 1 157 ILE 157 158 158 ILE ILE B . n A 1 158 ILE 158 159 159 ILE ILE B . n A 1 159 LEU 159 160 160 LEU LEU B . n A 1 160 ILE 160 161 161 ILE ILE B . n A 1 161 ASP 161 162 162 ASP ASP B . n A 1 162 CYS 162 163 163 CYS CYS B . n A 1 163 GLY 163 164 164 GLY GLY B . n A 1 164 LYS 164 165 165 LYS LYS B . n A 1 165 ASP 165 166 ? ? ? B . n A 1 166 THR 166 167 ? ? ? B . n A 1 167 GLN 167 168 ? ? ? B . n A 1 168 GLU 168 169 ? ? ? B . n A 1 169 GLU 169 170 ? ? ? B . n A 1 170 ARG 170 171 ? ? ? B . n A 1 171 LYS 171 172 ? ? ? B . n A 1 172 LYS 172 173 ? ? ? B . n A 1 173 SER 173 174 174 SER SER B . n A 1 174 ASN 174 175 175 ASN ASN B . n A 1 175 TRP 175 176 176 TRP TRP B . n A 1 176 LEU 176 177 177 LEU LEU B . n A 1 177 LYS 177 178 178 LYS LYS B . n A 1 178 LEU 178 179 179 LEU LEU B . n A 1 179 VAL 179 180 180 VAL VAL B . n A 1 180 GLU 180 181 181 GLU GLU B . n A 1 181 ALA 181 182 182 ALA ALA B . n A 1 182 ILE 182 183 183 ILE ILE B . n A 1 183 PRO 183 184 184 PRO PRO B . n A 1 184 ASN 184 185 185 ASN ASN B . n A 1 185 SER 185 186 186 SER SER B . n A 1 186 ARG 186 187 187 ARG ARG B . n A 1 187 ILE 187 188 188 ILE ILE B . n A 1 188 TYR 188 189 189 TYR TYR B . n A 1 189 ASN 189 190 190 ASN ASN B . n A 1 190 MET 190 191 191 MET MET B . n A 1 191 ASN 191 192 192 ASN ASN B . n A 1 192 GLU 192 193 193 GLU GLU B . n A 1 193 LEU 193 194 194 LEU LEU B . n A 1 194 LEU 194 195 195 LEU LEU B . n A 1 195 VAL 195 196 196 VAL VAL B . n A 1 196 GLU 196 197 197 GLU GLU B . n A 1 197 ILE 197 198 198 ILE ILE B . n A 1 198 THR 198 199 199 THR THR B . n A 1 199 SER 199 200 ? ? ? B . n B 2 1 ASN 1 104 104 ASN ASN C . n B 2 2 SER 2 105 105 SER SER C . n B 2 3 LYS 3 106 106 LYS LYS C . n B 2 4 LEU 4 107 107 LEU LEU C . n B 2 5 LEU 5 108 108 LEU LEU C . n B 2 6 SER 6 109 109 SER SER C . n B 2 7 LEU 7 110 110 LEU LEU C . n B 2 8 LEU 8 111 111 LEU LEU C . n B 2 9 ARG 9 112 112 ARG ARG C . n B 2 10 SER 10 113 113 SER SER C . n B 2 11 LYS 11 114 114 LYS LYS C . n B 2 12 THR 12 115 115 THR THR C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 1 301 101 SO4 SO4 B . D 4 HOH 1 401 4 HOH HOH B . D 4 HOH 2 402 2 HOH HOH B . D 4 HOH 3 403 14 HOH HOH B . D 4 HOH 4 404 25 HOH HOH B . D 4 HOH 5 405 34 HOH HOH B . D 4 HOH 6 406 33 HOH HOH B . D 4 HOH 7 407 6 HOH HOH B . D 4 HOH 8 408 31 HOH HOH B . D 4 HOH 9 409 27 HOH HOH B . D 4 HOH 10 410 21 HOH HOH B . D 4 HOH 11 411 17 HOH HOH B . D 4 HOH 12 412 23 HOH HOH B . D 4 HOH 13 413 1 HOH HOH B . D 4 HOH 14 414 7 HOH HOH B . D 4 HOH 15 415 5 HOH HOH B . D 4 HOH 16 416 29 HOH HOH B . D 4 HOH 17 417 12 HOH HOH B . D 4 HOH 18 418 15 HOH HOH B . D 4 HOH 19 419 3 HOH HOH B . D 4 HOH 20 420 32 HOH HOH B . D 4 HOH 21 421 16 HOH HOH B . D 4 HOH 22 422 9 HOH HOH B . D 4 HOH 23 423 24 HOH HOH B . D 4 HOH 24 424 13 HOH HOH B . D 4 HOH 25 425 10 HOH HOH B . D 4 HOH 26 426 28 HOH HOH B . D 4 HOH 27 427 20 HOH HOH B . D 4 HOH 28 428 18 HOH HOH B . D 4 HOH 29 429 30 HOH HOH B . D 4 HOH 30 430 19 HOH HOH B . D 4 HOH 31 431 35 HOH HOH B . D 4 HOH 32 432 26 HOH HOH B . D 4 HOH 33 433 22 HOH HOH B . D 4 HOH 34 434 8 HOH HOH B . D 4 HOH 35 435 11 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.9_1692 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.22 3 ? 'data collection' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 5 # _cell.length_a 79.472 _cell.length_b 79.472 _cell.length_c 82.926 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 5Y59 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.entry_id 5Y59 _symmetry.Int_Tables_number 152 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5Y59 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.13 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 60.75 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity 0.242 _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method EVAPORATION _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 M HEPES, 2.0 M ammonium sulfate' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _diffrn.ambient_environment _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.ambient_temp_esd _diffrn.crystal_id _diffrn.crystal_support _diffrn.crystal_treatment _diffrn.details _diffrn.id _diffrn.ambient_pressure _diffrn.ambient_pressure_esd _diffrn.ambient_pressure_gt _diffrn.ambient_pressure_lt _diffrn.ambient_temp_gt _diffrn.ambient_temp_lt ? 100 ? ? 1 ? ? ? 1 ? ? ? ? ? ? ? 100 ? ? 1 ? ? ? 2 ? ? ? ? ? ? # loop_ _diffrn_detector.details _diffrn_detector.detector _diffrn_detector.diffrn_id _diffrn_detector.type _diffrn_detector.area_resol_mean _diffrn_detector.dtime _diffrn_detector.pdbx_frames_total _diffrn_detector.pdbx_collection_time_total _diffrn_detector.pdbx_collection_date ? PIXEL 1 'DECTRIS PILATUS 6M' ? ? ? ? 2016-10-17 ? PIXEL 2 'DECTRIS PILATUS 6M' ? ? ? ? 2016-10-17 # loop_ _diffrn_radiation.collimation _diffrn_radiation.diffrn_id _diffrn_radiation.filter_edge _diffrn_radiation.inhomogeneity _diffrn_radiation.monochromator _diffrn_radiation.polarisn_norm _diffrn_radiation.polarisn_ratio _diffrn_radiation.probe _diffrn_radiation.type _diffrn_radiation.xray_symbol _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.pdbx_wavelength_list _diffrn_radiation.pdbx_wavelength _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.pdbx_analyzer _diffrn_radiation.pdbx_scattering_type ? 1 ? ? ? ? ? ? ? ? 1 M ? ? 'SINGLE WAVELENGTH' ? x-ray ? 2 ? ? ? ? ? ? ? ? 2 M ? ? 'SINGLE WAVELENGTH' ? x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97851 1.0 2 . 1.0 # loop_ _diffrn_source.current _diffrn_source.details _diffrn_source.diffrn_id _diffrn_source.power _diffrn_source.size _diffrn_source.source _diffrn_source.target _diffrn_source.type _diffrn_source.voltage _diffrn_source.take-off_angle _diffrn_source.pdbx_wavelength_list _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_synchrotron_site ? ? 1 ? ? SYNCHROTRON ? 'SSRF BEAMLINE BL18U1' ? ? 0.97851 ? BL18U1 SSRF ? ? 2 ? ? SYNCHROTRON ? 'SSRF BEAMLINE BL19U1' ? ? 0.97851 ? BL19U1 SSRF # _reflns.entry_id 5Y59 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.000 _reflns.d_resolution_high 2.400 _reflns.number_obs 12169 _reflns.number_all ? _reflns.percent_possible_obs 99.600 _reflns.pdbx_Rmerge_I_obs 0.071 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 6.200 _reflns.B_iso_Wilson_estimate 34.820 _reflns.pdbx_redundancy 18.000 _reflns.pdbx_Rrim_I_all 0.073 _reflns.pdbx_Rpim_I_all 0.017 _reflns.pdbx_CC_half ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_number_measured_all 219073 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_chi_squared 0.967 _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.details ? # loop_ _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.pdbx_rejects _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.meanI_over_sigI_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_CC_half 1 1 2.400 2.490 ? ? 1156 ? 0.888 ? ? 0.997 11.400 ? ? ? ? ? ? ? ? 96.200 0.927 0.253 0.833 1 2 2.490 2.590 ? ? 1183 ? 0.759 ? ? 0.999 14.100 ? ? ? ? ? ? ? ? 99.900 0.787 0.202 0.944 1 3 2.590 2.700 ? ? 1206 ? 0.723 ? ? 1.014 18.700 ? ? ? ? ? ? ? ? 100.000 0.743 0.170 0.966 1 4 2.700 2.850 ? ? 1207 ? 0.531 ? ? 1.021 20.300 ? ? ? ? ? ? ? ? 100.000 0.545 0.120 0.983 1 5 2.850 3.020 ? ? 1196 ? 0.329 ? ? 1.021 19.700 ? ? ? ? ? ? ? ? 100.000 0.338 0.076 0.992 1 6 3.020 3.260 ? ? 1211 ? 0.175 ? ? 1.032 18.900 ? ? ? ? ? ? ? ? 100.000 0.179 0.041 0.997 1 7 3.260 3.580 ? ? 1233 ? 0.102 ? ? 1.030 20.200 ? ? ? ? ? ? ? ? 100.000 0.105 0.023 0.999 1 8 3.580 4.100 ? ? 1212 ? 0.062 ? ? 0.997 19.300 ? ? ? ? ? ? ? ? 100.000 0.064 0.014 0.999 1 9 4.100 5.170 ? ? 1252 ? 0.039 ? ? 0.860 19.700 ? ? ? ? ? ? ? ? 100.000 0.040 0.009 0.999 1 10 5.170 50.000 ? ? 1313 ? 0.031 ? ? 0.714 17.300 ? ? ? ? ? ? ? ? 100.000 0.032 0.007 1.000 # _refine.entry_id 5Y59 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 2.4020 _refine.ls_d_res_low 27.6420 _refine.pdbx_ls_sigma_F 1.350 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 89.9100 _refine.ls_number_reflns_obs 10957 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details ? _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2037 _refine.ls_R_factor_R_work 0.2012 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2479 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.4000 _refine.ls_number_reflns_R_free 592 _refine.ls_number_reflns_R_work 10365 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 59.0118 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.2900 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 150.380 _refine.B_iso_min 16.170 _refine.pdbx_overall_phase_error 25.5300 _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_diffrn_id 1,2 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_R_factor_R_free_error_details ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 2.4020 _refine_hist.d_res_low 27.6420 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 35 _refine_hist.number_atoms_total 1632 _refine_hist.pdbx_number_residues_total 200 _refine_hist.pdbx_B_iso_mean_ligand 98.57 _refine_hist.pdbx_B_iso_mean_solvent 52.16 _refine_hist.pdbx_number_atoms_protein 1592 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' f_bond_d 1614 0.010 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 2178 1.306 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 265 0.064 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 270 0.004 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 610 14.323 ? ? ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.pdbx_refine_id _refine_ls_shell.R_factor_obs 2.4021 2.6436 4 60.0000 1688 . 0.2399 0.3198 . 108 0.0000 1796 . 'X-RAY DIFFRACTION' . 2.6436 3.0258 4 100.0000 2838 . 0.2288 0.2812 . 161 0.0000 2999 . 'X-RAY DIFFRACTION' . 3.0258 3.8106 4 100.0000 2889 . 0.2082 0.2473 . 152 0.0000 3041 . 'X-RAY DIFFRACTION' . 3.8106 27.6438 4 99.0000 2950 . 0.1806 0.2234 . 171 0.0000 3121 . 'X-RAY DIFFRACTION' . # _struct.entry_id 5Y59 _struct.title 'Crystal structure of Ku80 and Sir4' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5Y59 _struct_keywords.text 'telomerase, telomere, protein-protein complex, PROTEIN BINDING' _struct_keywords.pdbx_keywords 'PROTEIN BINDING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP KU80_YEAST Q04437 ? 1 ;SSESTTFIVDVSPSMMKNNNVSKSMAYLEYTLLNKSKKSRKTDWISCYLANCPVSENSQEIPNVFQIQSFLAPVTTTATI GFIKRLKQYCDQHSHDSSNEGLQSMIQCLLVVSLDIKQQFQARKILKQIVVFTDNLDDLDITDEEIDLLTEELSTRIILI DCGKDTQEERKKSNWLKLVEAIPNSRIYNMNELLVEITS ; 2 2 UNP E7QD18_YEASZ E7QD18 ? 2 NSKLLSLLRSKT 104 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5Y59 B 1 ? 199 ? Q04437 2 ? 200 ? 2 200 2 2 5Y59 C 1 ? 12 ? E7QD18 104 ? 115 ? 104 115 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1370 ? 1 MORE -23 ? 1 'SSA (A^2)' 10620 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 12 ? ASN A 18 ? SER B 13 ASN B 19 1 ? 7 HELX_P HELX_P2 AA2 ASN A 19 ? ASN A 34 ? ASN B 20 ASN B 35 1 ? 16 HELX_P HELX_P3 AA3 SER A 36 ? LYS A 41 ? SER B 37 LYS B 42 1 ? 6 HELX_P HELX_P4 AA4 THR A 75 ? SER A 94 ? THR B 76 SER B 95 1 ? 20 HELX_P HELX_P5 AA5 SER A 104 ? GLN A 121 ? SER B 105 GLN B 122 1 ? 18 HELX_P HELX_P6 AA6 GLU A 145 ? LEU A 153 ? GLU B 146 LEU B 154 1 ? 9 HELX_P HELX_P7 AA7 ASN A 174 ? ILE A 182 ? ASN B 175 ILE B 183 1 ? 9 HELX_P HELX_P8 AA8 ASN A 191 ? LEU A 193 ? ASN B 192 LEU B 194 5 ? 3 HELX_P HELX_P9 AA9 SER B 2 ? THR B 12 ? SER C 105 THR C 115 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ALA _struct_mon_prot_cis.label_seq_id 72 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ALA _struct_mon_prot_cis.auth_seq_id 73 _struct_mon_prot_cis.auth_asym_id B _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 73 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 74 _struct_mon_prot_cis.pdbx_auth_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 5.66 # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA1 4 5 ? parallel AA1 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 PHE A 65 ? LEU A 71 ? PHE B 66 LEU B 72 AA1 2 TRP A 44 ? ALA A 50 ? TRP B 45 ALA B 51 AA1 3 GLU A 3 ? ASP A 10 ? GLU B 4 ASP B 11 AA1 4 LEU A 126 ? THR A 133 ? LEU B 127 THR B 134 AA1 5 ARG A 156 ? ASP A 161 ? ARG B 157 ASP B 162 AA1 6 ARG A 186 ? ASN A 189 ? ARG B 187 ASN B 190 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O LEU A 71 ? O LEU B 72 N ILE A 45 ? N ILE B 46 AA1 2 3 O SER A 46 ? O SER B 47 N PHE A 7 ? N PHE B 8 AA1 3 4 N SER A 4 ? N SER B 5 O LEU A 126 ? O LEU B 127 AA1 4 5 N VAL A 131 ? N VAL B 132 O ILE A 160 ? O ILE B 161 AA1 5 6 N ASP A 161 ? N ASP B 162 O TYR A 188 ? O TYR B 189 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id B _struct_site.pdbx_auth_comp_id SO4 _struct_site.pdbx_auth_seq_id 301 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'binding site for residue SO4 B 301' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 ARG A 40 ? ARG B 41 . ? 1_555 ? 2 AC1 4 THR A 75 ? THR B 76 . ? 1_555 ? 3 AC1 4 THR A 76 ? THR B 77 . ? 1_555 ? 4 AC1 4 HOH D . ? HOH B 419 . ? 1_555 ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN B 122 ? ? 57.67 -139.11 2 1 ASP B 141 ? ? -66.65 95.99 3 1 CYS B 163 ? ? -107.24 49.40 # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 25.0297 19.5094 -10.3744 0.2956 0.2879 0.2707 0.0534 -0.0042 -0.1254 4.7665 3.2004 7.0860 0.2482 -1.0613 -0.7979 -0.0664 0.0240 -0.0072 0.7438 -0.3052 0.0569 -0.2863 1.0447 0.0024 'X-RAY DIFFRACTION' 2 ? refined 37.8352 12.3659 -24.2123 1.1272 1.1962 0.8262 0.2334 0.3262 -0.5397 6.7633 4.3891 4.7056 -1.1101 -0.1381 0.0254 -0.2583 0.3552 0.9229 0.4879 -0.7157 -0.6571 0.1321 1.5709 0.8041 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 B 2 B 199 'chain B' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 C 104 C 115 'chain C' ? ? ? ? ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B THR 143 ? A THR 142 2 1 Y 1 B ASP 144 ? A ASP 143 3 1 Y 1 B ASP 166 ? A ASP 165 4 1 Y 1 B THR 167 ? A THR 166 5 1 Y 1 B GLN 168 ? A GLN 167 6 1 Y 1 B GLU 169 ? A GLU 168 7 1 Y 1 B GLU 170 ? A GLU 169 8 1 Y 1 B ARG 171 ? A ARG 170 9 1 Y 1 B LYS 172 ? A LYS 171 10 1 Y 1 B LYS 173 ? A LYS 172 11 1 Y 1 B SER 200 ? A SER 199 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 PHE N N N N 250 PHE CA C N S 251 PHE C C N N 252 PHE O O N N 253 PHE CB C N N 254 PHE CG C Y N 255 PHE CD1 C Y N 256 PHE CD2 C Y N 257 PHE CE1 C Y N 258 PHE CE2 C Y N 259 PHE CZ C Y N 260 PHE OXT O N N 261 PHE H H N N 262 PHE H2 H N N 263 PHE HA H N N 264 PHE HB2 H N N 265 PHE HB3 H N N 266 PHE HD1 H N N 267 PHE HD2 H N N 268 PHE HE1 H N N 269 PHE HE2 H N N 270 PHE HZ H N N 271 PHE HXT H N N 272 PRO N N N N 273 PRO CA C N S 274 PRO C C N N 275 PRO O O N N 276 PRO CB C N N 277 PRO CG C N N 278 PRO CD C N N 279 PRO OXT O N N 280 PRO H H N N 281 PRO HA H N N 282 PRO HB2 H N N 283 PRO HB3 H N N 284 PRO HG2 H N N 285 PRO HG3 H N N 286 PRO HD2 H N N 287 PRO HD3 H N N 288 PRO HXT H N N 289 SER N N N N 290 SER CA C N S 291 SER C C N N 292 SER O O N N 293 SER CB C N N 294 SER OG O N N 295 SER OXT O N N 296 SER H H N N 297 SER H2 H N N 298 SER HA H N N 299 SER HB2 H N N 300 SER HB3 H N N 301 SER HG H N N 302 SER HXT H N N 303 SO4 S S N N 304 SO4 O1 O N N 305 SO4 O2 O N N 306 SO4 O3 O N N 307 SO4 O4 O N N 308 THR N N N N 309 THR CA C N S 310 THR C C N N 311 THR O O N N 312 THR CB C N R 313 THR OG1 O N N 314 THR CG2 C N N 315 THR OXT O N N 316 THR H H N N 317 THR H2 H N N 318 THR HA H N N 319 THR HB H N N 320 THR HG1 H N N 321 THR HG21 H N N 322 THR HG22 H N N 323 THR HG23 H N N 324 THR HXT H N N 325 TRP N N N N 326 TRP CA C N S 327 TRP C C N N 328 TRP O O N N 329 TRP CB C N N 330 TRP CG C Y N 331 TRP CD1 C Y N 332 TRP CD2 C Y N 333 TRP NE1 N Y N 334 TRP CE2 C Y N 335 TRP CE3 C Y N 336 TRP CZ2 C Y N 337 TRP CZ3 C Y N 338 TRP CH2 C Y N 339 TRP OXT O N N 340 TRP H H N N 341 TRP H2 H N N 342 TRP HA H N N 343 TRP HB2 H N N 344 TRP HB3 H N N 345 TRP HD1 H N N 346 TRP HE1 H N N 347 TRP HE3 H N N 348 TRP HZ2 H N N 349 TRP HZ3 H N N 350 TRP HH2 H N N 351 TRP HXT H N N 352 TYR N N N N 353 TYR CA C N S 354 TYR C C N N 355 TYR O O N N 356 TYR CB C N N 357 TYR CG C Y N 358 TYR CD1 C Y N 359 TYR CD2 C Y N 360 TYR CE1 C Y N 361 TYR CE2 C Y N 362 TYR CZ C Y N 363 TYR OH O N N 364 TYR OXT O N N 365 TYR H H N N 366 TYR H2 H N N 367 TYR HA H N N 368 TYR HB2 H N N 369 TYR HB3 H N N 370 TYR HD1 H N N 371 TYR HD2 H N N 372 TYR HE1 H N N 373 TYR HE2 H N N 374 TYR HH H N N 375 TYR HXT H N N 376 VAL N N N N 377 VAL CA C N S 378 VAL C C N N 379 VAL O O N N 380 VAL CB C N N 381 VAL CG1 C N N 382 VAL CG2 C N N 383 VAL OXT O N N 384 VAL H H N N 385 VAL H2 H N N 386 VAL HA H N N 387 VAL HB H N N 388 VAL HG11 H N N 389 VAL HG12 H N N 390 VAL HG13 H N N 391 VAL HG21 H N N 392 VAL HG22 H N N 393 VAL HG23 H N N 394 VAL HXT H N N 395 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 SO4 S O1 doub N N 290 SO4 S O2 doub N N 291 SO4 S O3 sing N N 292 SO4 S O4 sing N N 293 THR N CA sing N N 294 THR N H sing N N 295 THR N H2 sing N N 296 THR CA C sing N N 297 THR CA CB sing N N 298 THR CA HA sing N N 299 THR C O doub N N 300 THR C OXT sing N N 301 THR CB OG1 sing N N 302 THR CB CG2 sing N N 303 THR CB HB sing N N 304 THR OG1 HG1 sing N N 305 THR CG2 HG21 sing N N 306 THR CG2 HG22 sing N N 307 THR CG2 HG23 sing N N 308 THR OXT HXT sing N N 309 TRP N CA sing N N 310 TRP N H sing N N 311 TRP N H2 sing N N 312 TRP CA C sing N N 313 TRP CA CB sing N N 314 TRP CA HA sing N N 315 TRP C O doub N N 316 TRP C OXT sing N N 317 TRP CB CG sing N N 318 TRP CB HB2 sing N N 319 TRP CB HB3 sing N N 320 TRP CG CD1 doub Y N 321 TRP CG CD2 sing Y N 322 TRP CD1 NE1 sing Y N 323 TRP CD1 HD1 sing N N 324 TRP CD2 CE2 doub Y N 325 TRP CD2 CE3 sing Y N 326 TRP NE1 CE2 sing Y N 327 TRP NE1 HE1 sing N N 328 TRP CE2 CZ2 sing Y N 329 TRP CE3 CZ3 doub Y N 330 TRP CE3 HE3 sing N N 331 TRP CZ2 CH2 doub Y N 332 TRP CZ2 HZ2 sing N N 333 TRP CZ3 CH2 sing Y N 334 TRP CZ3 HZ3 sing N N 335 TRP CH2 HH2 sing N N 336 TRP OXT HXT sing N N 337 TYR N CA sing N N 338 TYR N H sing N N 339 TYR N H2 sing N N 340 TYR CA C sing N N 341 TYR CA CB sing N N 342 TYR CA HA sing N N 343 TYR C O doub N N 344 TYR C OXT sing N N 345 TYR CB CG sing N N 346 TYR CB HB2 sing N N 347 TYR CB HB3 sing N N 348 TYR CG CD1 doub Y N 349 TYR CG CD2 sing Y N 350 TYR CD1 CE1 sing Y N 351 TYR CD1 HD1 sing N N 352 TYR CD2 CE2 doub Y N 353 TYR CD2 HD2 sing N N 354 TYR CE1 CZ doub Y N 355 TYR CE1 HE1 sing N N 356 TYR CE2 CZ sing Y N 357 TYR CE2 HE2 sing N N 358 TYR CZ OH sing N N 359 TYR OH HH sing N N 360 TYR OXT HXT sing N N 361 VAL N CA sing N N 362 VAL N H sing N N 363 VAL N H2 sing N N 364 VAL CA C sing N N 365 VAL CA CB sing N N 366 VAL CA HA sing N N 367 VAL C O doub N N 368 VAL C OXT sing N N 369 VAL CB CG1 sing N N 370 VAL CB CG2 sing N N 371 VAL CB HB sing N N 372 VAL CG1 HG11 sing N N 373 VAL CG1 HG12 sing N N 374 VAL CG1 HG13 sing N N 375 VAL CG2 HG21 sing N N 376 VAL CG2 HG22 sing N N 377 VAL CG2 HG23 sing N N 378 VAL OXT HXT sing N N 379 # _atom_sites.entry_id 5Y59 _atom_sites.fract_transf_matrix[1][1] 0.012583 _atom_sites.fract_transf_matrix[1][2] 0.007265 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014530 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012059 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_