HEADER VIRAL PROTEIN 09-AUG-17 5Y5Q TITLE CRYSTAL STRUCTURE OF THE WSSV DUTPASE D88N/R158E MUTANT IN COMPLEX TITLE 2 WITH DUTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: WSV112; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: UNP RESIDUES 1-171; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 OTHER_DETAILS: D88N/R158E MUTANT SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: WHITE SPOT SYNDROME VIRUS (ISOLATE SOURCE 3 SHRIMP/CHINA/TONGAN/1996); SOURCE 4 ORGANISM_COMMON: WSSV; SOURCE 5 ORGANISM_TAXID: 654913; SOURCE 6 STRAIN: ISOLATE SHRIMP/CHINA/TONGAN/1996; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET30 KEYWDS DUTPASE, WSSV, PYROPHOSPHATASE, DUTP, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Q.MA,K.ZANG REVDAT 4 22-NOV-23 5Y5Q 1 REMARK LINK REVDAT 3 31-JAN-18 5Y5Q 1 JRNL REVDAT 2 13-DEC-17 5Y5Q 1 JRNL REVDAT 1 06-DEC-17 5Y5Q 0 JRNL AUTH K.ZANG,F.LI,Q.MA JRNL TITL THE DUTPASE OF WHITE SPOT SYNDROME VIRUS ASSEMBLES ITS JRNL TITL 2 ACTIVE SITES IN A NONCANONICAL MANNER. JRNL REF J. BIOL. CHEM. V. 293 1088 2018 JRNL REFN ESSN 1083-351X JRNL PMID 29187596 JRNL DOI 10.1074/JBC.M117.815266 REMARK 2 REMARK 2 RESOLUTION. 1.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 71821 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : THIN SHELLS REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 3632 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.56 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.60 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.27 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 4582 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2220 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4290 REMARK 3 BIN R VALUE (WORKING SET) : 0.2210 REMARK 3 BIN FREE R VALUE : 0.2420 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 6.37 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 292 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3471 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 87 REMARK 3 SOLVENT ATOMS : 458 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.31 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.96660 REMARK 3 B22 (A**2) : 4.65450 REMARK 3 B33 (A**2) : -3.68800 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.190 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.078 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.075 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.073 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.071 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3641 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4952 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1282 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 83 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 544 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3641 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 497 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4381 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.05 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.99 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 13.95 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 24.0976 0.9166 -17.9605 REMARK 3 T TENSOR REMARK 3 T11: -0.0565 T22: -0.0251 REMARK 3 T33: -0.0729 T12: -0.0338 REMARK 3 T13: 0.0163 T23: 0.0386 REMARK 3 L TENSOR REMARK 3 L11: 0.7502 L22: 0.7062 REMARK 3 L33: 1.3938 L12: -0.0244 REMARK 3 L13: 0.1550 L23: 0.0219 REMARK 3 S TENSOR REMARK 3 S11: -0.0193 S12: 0.2099 S13: 0.0249 REMARK 3 S21: -0.1288 S22: -0.0621 S23: -0.0853 REMARK 3 S31: -0.1129 S32: 0.2849 S33: 0.0814 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 9.5966 2.0654 -7.2253 REMARK 3 T TENSOR REMARK 3 T11: -0.0606 T22: -0.0533 REMARK 3 T33: -0.0366 T12: 0.0145 REMARK 3 T13: -0.0176 T23: -0.0094 REMARK 3 L TENSOR REMARK 3 L11: 0.8012 L22: 0.7324 REMARK 3 L33: 1.5144 L12: -0.1715 REMARK 3 L13: 0.3357 L23: 0.0006 REMARK 3 S TENSOR REMARK 3 S11: -0.0557 S12: -0.0342 S13: 0.0318 REMARK 3 S21: -0.0317 S22: 0.0031 S23: 0.0687 REMARK 3 S31: -0.1437 S32: -0.1251 S33: 0.0526 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): 11.4942 -11.1542 -16.2169 REMARK 3 T TENSOR REMARK 3 T11: -0.0231 T22: -0.0407 REMARK 3 T33: -0.0379 T12: -0.0160 REMARK 3 T13: -0.0154 T23: -0.0098 REMARK 3 L TENSOR REMARK 3 L11: 1.1808 L22: 1.0191 REMARK 3 L33: 2.0188 L12: -0.0052 REMARK 3 L13: 0.6234 L23: -0.4124 REMARK 3 S TENSOR REMARK 3 S11: 0.0617 S12: 0.0643 S13: -0.1227 REMARK 3 S21: -0.1933 S22: 0.0015 S23: 0.0726 REMARK 3 S31: 0.1704 S32: -0.0276 S33: -0.0632 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5Y5Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1300004708. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : DYNAMICALLY BENDABLE TOROIDAL REMARK 200 MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC 1.0.4 REMARK 200 DATA SCALING SOFTWARE : AUTOPROC 1.0.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71914 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.560 REMARK 200 RESOLUTION RANGE LOW (A) : 113.321 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 14.50 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.3 REMARK 200 DATA REDUNDANCY IN SHELL : 13.60 REMARK 200 R MERGE FOR SHELL (I) : 1.13300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5Y5P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% (W/V) PEG 1500, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.78700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.66050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.76350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.66050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.78700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.76350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -87.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 LYS A 151 REMARK 465 ASP A 152 REMARK 465 ASN A 153 REMARK 465 LYS A 154 REMARK 465 ASN A 155 REMARK 465 GLN A 156 REMARK 465 ALA A 157 REMARK 465 GLU A 158 REMARK 465 SER A 159 REMARK 465 VAL A 160 REMARK 465 ARG A 161 REMARK 465 GLY A 162 REMARK 465 THR A 163 REMARK 465 GLY A 164 REMARK 465 GLY A 165 REMARK 465 PHE A 166 REMARK 465 GLY A 167 REMARK 465 SER A 168 REMARK 465 THR A 169 REMARK 465 ASP A 170 REMARK 465 ASN A 171 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 GLY B 164 REMARK 465 GLY B 165 REMARK 465 PHE B 166 REMARK 465 GLY B 167 REMARK 465 SER B 168 REMARK 465 THR B 169 REMARK 465 ASP B 170 REMARK 465 ASN B 171 REMARK 465 SER C -2 REMARK 465 ASN C -1 REMARK 465 ALA C 0 REMARK 465 MET C 1 REMARK 465 GLY C 16 REMARK 465 GLU C 17 REMARK 465 GLU C 18 REMARK 465 ASN C 136 REMARK 465 GLU C 137 REMARK 465 THR C 138 REMARK 465 THR C 139 REMARK 465 GLY C 140 REMARK 465 GLU C 141 REMARK 465 LYS C 151 REMARK 465 ASP C 152 REMARK 465 ASN C 153 REMARK 465 LYS C 154 REMARK 465 ASN C 155 REMARK 465 GLN C 156 REMARK 465 ALA C 157 REMARK 465 GLU C 158 REMARK 465 SER C 159 REMARK 465 VAL C 160 REMARK 465 ARG C 161 REMARK 465 GLY C 162 REMARK 465 THR C 163 REMARK 465 GLY C 164 REMARK 465 GLY C 165 REMARK 465 PHE C 166 REMARK 465 GLY C 167 REMARK 465 SER C 168 REMARK 465 THR C 169 REMARK 465 ASP C 170 REMARK 465 ASN C 171 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DUT A 501 O1A REMARK 620 2 DUT A 501 O1B 87.9 REMARK 620 3 HOH A 601 O 90.5 90.2 REMARK 620 4 HOH A 712 O 93.2 178.4 88.7 REMARK 620 5 HOH B 306 O 90.4 90.8 178.7 90.3 REMARK 620 6 HOH B 369 O 173.9 86.9 92.7 92.1 86.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 604 O REMARK 620 2 HOH A 618 O 85.5 REMARK 620 3 DUT C 202 O1G 173.2 90.3 REMARK 620 4 DUT C 202 O1A 94.7 179.7 89.5 REMARK 620 5 DUT C 202 O1B 90.4 89.8 84.3 90.4 REMARK 620 6 HOH C 385 O 90.1 88.9 95.2 91.0 178.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DUT B 202 O1A REMARK 620 2 DUT B 202 O1B 90.2 REMARK 620 3 HOH B 304 O 90.0 93.3 REMARK 620 4 HOH B 411 O 91.4 178.3 87.2 REMARK 620 5 HOH C 305 O 91.3 90.8 175.7 88.7 REMARK 620 6 HOH C 344 O 178.4 90.0 91.5 88.3 87.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DUT A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DUT B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DUT C 202 DBREF 5Y5Q A 1 171 UNP Q77J78 Q77J78_WSSVS 1 171 DBREF 5Y5Q B 1 171 UNP Q77J78 Q77J78_WSSVS 1 171 DBREF 5Y5Q C 1 171 UNP Q77J78 Q77J78_WSSVS 1 171 SEQADV 5Y5Q SER A -2 UNP Q77J78 EXPRESSION TAG SEQADV 5Y5Q ASN A -1 UNP Q77J78 EXPRESSION TAG SEQADV 5Y5Q ALA A 0 UNP Q77J78 EXPRESSION TAG SEQADV 5Y5Q ASN A 88 UNP Q77J78 ASP 88 ENGINEERED MUTATION SEQADV 5Y5Q GLU A 158 UNP Q77J78 ARG 158 ENGINEERED MUTATION SEQADV 5Y5Q SER B -2 UNP Q77J78 EXPRESSION TAG SEQADV 5Y5Q ASN B -1 UNP Q77J78 EXPRESSION TAG SEQADV 5Y5Q ALA B 0 UNP Q77J78 EXPRESSION TAG SEQADV 5Y5Q ASN B 88 UNP Q77J78 ASP 88 ENGINEERED MUTATION SEQADV 5Y5Q GLU B 158 UNP Q77J78 ARG 158 ENGINEERED MUTATION SEQADV 5Y5Q SER C -2 UNP Q77J78 EXPRESSION TAG SEQADV 5Y5Q ASN C -1 UNP Q77J78 EXPRESSION TAG SEQADV 5Y5Q ALA C 0 UNP Q77J78 EXPRESSION TAG SEQADV 5Y5Q ASN C 88 UNP Q77J78 ASP 88 ENGINEERED MUTATION SEQADV 5Y5Q GLU C 158 UNP Q77J78 ARG 158 ENGINEERED MUTATION SEQRES 1 A 174 SER ASN ALA MET ASP SER SER ALA SER VAL VAL PHE MET SEQRES 2 A 174 ARG PHE ALA PRO PRO GLY GLU GLU THR ALA LEU PRO PRO SEQRES 3 A 174 ARG ARG ALA THR PRO GLY SER VAL ALA TYR ASP LEU PHE SEQRES 4 A 174 PRO SER GLU GLU MET ASP ILE GLU PRO MET GLY LEU ALA SEQRES 5 A 174 LYS ILE SER THR GLY TYR GLY ILE ASP LYS PHE PRO ASP SEQRES 6 A 174 GLY CYS TYR GLY GLN ILE VAL SER ARG SER GLY MET THR SEQRES 7 A 174 TRP LYS ASN ASN THR SER VAL PRO THR GLY THR ILE ASN SEQRES 8 A 174 VAL ASP TYR ARG GLY GLU LEU LYS VAL ILE LEU ARG ASN SEQRES 9 A 174 HIS SER ALA GLU LYS SER VAL PRO ILE ARG LYS GLY THR SEQRES 10 A 174 SER ILE ALA GLN LEU ILE PHE LEU ARG TYR CYS ASP VAL SEQRES 11 A 174 GLU GLU GLU GLN ILE VAL TYR ILE ASN GLU THR THR GLY SEQRES 12 A 174 GLU ARG THR ILE ILE ASP SER SER SER LYS LYS ASP ASN SEQRES 13 A 174 LYS ASN GLN ALA GLU SER VAL ARG GLY THR GLY GLY PHE SEQRES 14 A 174 GLY SER THR ASP ASN SEQRES 1 B 174 SER ASN ALA MET ASP SER SER ALA SER VAL VAL PHE MET SEQRES 2 B 174 ARG PHE ALA PRO PRO GLY GLU GLU THR ALA LEU PRO PRO SEQRES 3 B 174 ARG ARG ALA THR PRO GLY SER VAL ALA TYR ASP LEU PHE SEQRES 4 B 174 PRO SER GLU GLU MET ASP ILE GLU PRO MET GLY LEU ALA SEQRES 5 B 174 LYS ILE SER THR GLY TYR GLY ILE ASP LYS PHE PRO ASP SEQRES 6 B 174 GLY CYS TYR GLY GLN ILE VAL SER ARG SER GLY MET THR SEQRES 7 B 174 TRP LYS ASN ASN THR SER VAL PRO THR GLY THR ILE ASN SEQRES 8 B 174 VAL ASP TYR ARG GLY GLU LEU LYS VAL ILE LEU ARG ASN SEQRES 9 B 174 HIS SER ALA GLU LYS SER VAL PRO ILE ARG LYS GLY THR SEQRES 10 B 174 SER ILE ALA GLN LEU ILE PHE LEU ARG TYR CYS ASP VAL SEQRES 11 B 174 GLU GLU GLU GLN ILE VAL TYR ILE ASN GLU THR THR GLY SEQRES 12 B 174 GLU ARG THR ILE ILE ASP SER SER SER LYS LYS ASP ASN SEQRES 13 B 174 LYS ASN GLN ALA GLU SER VAL ARG GLY THR GLY GLY PHE SEQRES 14 B 174 GLY SER THR ASP ASN SEQRES 1 C 174 SER ASN ALA MET ASP SER SER ALA SER VAL VAL PHE MET SEQRES 2 C 174 ARG PHE ALA PRO PRO GLY GLU GLU THR ALA LEU PRO PRO SEQRES 3 C 174 ARG ARG ALA THR PRO GLY SER VAL ALA TYR ASP LEU PHE SEQRES 4 C 174 PRO SER GLU GLU MET ASP ILE GLU PRO MET GLY LEU ALA SEQRES 5 C 174 LYS ILE SER THR GLY TYR GLY ILE ASP LYS PHE PRO ASP SEQRES 6 C 174 GLY CYS TYR GLY GLN ILE VAL SER ARG SER GLY MET THR SEQRES 7 C 174 TRP LYS ASN ASN THR SER VAL PRO THR GLY THR ILE ASN SEQRES 8 C 174 VAL ASP TYR ARG GLY GLU LEU LYS VAL ILE LEU ARG ASN SEQRES 9 C 174 HIS SER ALA GLU LYS SER VAL PRO ILE ARG LYS GLY THR SEQRES 10 C 174 SER ILE ALA GLN LEU ILE PHE LEU ARG TYR CYS ASP VAL SEQRES 11 C 174 GLU GLU GLU GLN ILE VAL TYR ILE ASN GLU THR THR GLY SEQRES 12 C 174 GLU ARG THR ILE ILE ASP SER SER SER LYS LYS ASP ASN SEQRES 13 C 174 LYS ASN GLN ALA GLU SER VAL ARG GLY THR GLY GLY PHE SEQRES 14 C 174 GLY SER THR ASP ASN HET DUT A 501 28 HET MG A 502 1 HET MG B 201 1 HET DUT B 202 28 HET MG C 201 1 HET DUT C 202 29 HETNAM DUT DEOXYURIDINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 4 DUT 3(C9 H15 N2 O14 P3) FORMUL 5 MG 3(MG 2+) FORMUL 10 HOH *458(H2 O) HELIX 1 AA1 ARG A 71 ASN A 79 1 9 HELIX 2 AA2 ARG B 71 ASN B 79 1 9 HELIX 3 AA3 ARG C 71 ASN C 79 1 9 SHEET 1 AA1 4 TYR A 55 LYS A 59 0 SHEET 2 AA1 4 SER A 6 ARG A 11 -1 N MET A 10 O GLY A 56 SHEET 3 AA1 4 GLU C 129 TYR C 134 1 O GLN C 131 N PHE A 9 SHEET 4 AA1 4 THR C 143 SER C 149 -1 O ILE C 145 N ILE C 132 SHEET 1 AA2 4 TYR A 33 LEU A 35 0 SHEET 2 AA2 4 ALA A 117 ARG A 123 -1 O ALA A 117 N LEU A 35 SHEET 3 AA2 4 CYS A 64 VAL A 69 -1 N VAL A 69 O GLN A 118 SHEET 4 AA2 4 THR A 86 ILE A 87 -1 O ILE A 87 N GLY A 66 SHEET 1 AA3 2 MET A 41 ILE A 43 0 SHEET 2 AA3 2 VAL A 108 ILE A 110 -1 O ILE A 110 N MET A 41 SHEET 1 AA4 3 LEU A 48 SER A 52 0 SHEET 2 AA4 3 LYS A 96 ASN A 101 -1 O VAL A 97 N ILE A 51 SHEET 3 AA4 3 THR A 80 SER A 81 -1 N SER A 81 O ARG A 100 SHEET 1 AA5 4 ARG A 142 SER A 149 0 SHEET 2 AA5 4 GLU A 129 ILE A 135 -1 N ILE A 132 O ILE A 145 SHEET 3 AA5 4 SER B 6 ARG B 11 1 O PHE B 9 N GLN A 131 SHEET 4 AA5 4 TYR B 55 LYS B 59 -1 O GLY B 56 N MET B 10 SHEET 1 AA6 4 TYR B 33 LEU B 35 0 SHEET 2 AA6 4 ALA B 117 ARG B 123 -1 O ALA B 117 N LEU B 35 SHEET 3 AA6 4 CYS B 64 VAL B 69 -1 N VAL B 69 O GLN B 118 SHEET 4 AA6 4 THR B 86 ILE B 87 -1 O ILE B 87 N GLY B 66 SHEET 1 AA7 2 MET B 41 ILE B 43 0 SHEET 2 AA7 2 VAL B 108 ILE B 110 -1 O ILE B 110 N MET B 41 SHEET 1 AA8 3 LEU B 48 SER B 52 0 SHEET 2 AA8 3 LYS B 96 ASN B 101 -1 O VAL B 97 N ILE B 51 SHEET 3 AA8 3 THR B 80 SER B 81 -1 N SER B 81 O ARG B 100 SHEET 1 AA9 4 ARG B 142 SER B 149 0 SHEET 2 AA9 4 GLU B 129 ILE B 135 -1 N ILE B 132 O ILE B 145 SHEET 3 AA9 4 SER C 6 ARG C 11 1 O PHE C 9 N GLN B 131 SHEET 4 AA9 4 TYR C 55 LYS C 59 -1 O GLY C 56 N MET C 10 SHEET 1 AB1 4 TYR C 33 LEU C 35 0 SHEET 2 AB1 4 ALA C 117 ARG C 123 -1 O LEU C 119 N TYR C 33 SHEET 3 AB1 4 CYS C 64 VAL C 69 -1 N VAL C 69 O GLN C 118 SHEET 4 AB1 4 THR C 86 ILE C 87 -1 O ILE C 87 N GLY C 66 SHEET 1 AB2 2 MET C 41 ILE C 43 0 SHEET 2 AB2 2 VAL C 108 ILE C 110 -1 O ILE C 110 N MET C 41 SHEET 1 AB3 3 LEU C 48 SER C 52 0 SHEET 2 AB3 3 LYS C 96 ASN C 101 -1 O VAL C 97 N ILE C 51 SHEET 3 AB3 3 THR C 80 SER C 81 -1 N SER C 81 O ARG C 100 LINK O1A DUT A 501 MG MG B 201 1555 1555 2.11 LINK O1B DUT A 501 MG MG B 201 1555 1555 2.08 LINK MG MG A 502 O HOH A 604 1555 1555 2.01 LINK MG MG A 502 O HOH A 618 1555 1555 2.08 LINK MG MG A 502 O1G DUT C 202 1555 1555 2.21 LINK MG MG A 502 O1A DUT C 202 1555 1555 2.09 LINK MG MG A 502 O1B DUT C 202 1555 1555 2.00 LINK MG MG A 502 O HOH C 385 1555 1555 2.05 LINK O HOH A 601 MG MG B 201 1555 1555 2.06 LINK O HOH A 712 MG MG B 201 1555 1555 2.02 LINK MG MG B 201 O HOH B 306 1555 1555 2.07 LINK MG MG B 201 O HOH B 369 1555 1555 2.08 LINK O1A DUT B 202 MG MG C 201 1555 1555 2.06 LINK O1B DUT B 202 MG MG C 201 1555 1555 2.04 LINK O HOH B 304 MG MG C 201 1555 1555 1.99 LINK O HOH B 411 MG MG C 201 1555 1555 2.12 LINK MG MG C 201 O HOH C 305 1555 1555 2.06 LINK MG MG C 201 O HOH C 344 1555 1555 2.04 SITE 1 AC1 25 THR A 84 GLY A 85 THR A 86 ILE A 87 SITE 2 AC1 25 ASN A 88 TYR A 91 LYS A 96 HOH A 601 SITE 3 AC1 25 HOH A 611 HOH A 616 HOH A 632 HOH A 634 SITE 4 AC1 25 HOH A 639 HOH A 676 HOH A 690 HOH A 710 SITE 5 AC1 25 HOH A 712 ARG B 71 SER B 72 GLY B 73 SITE 6 AC1 25 GLN B 118 MG B 201 HOH B 306 HOH B 368 SITE 7 AC1 25 HOH B 369 SITE 1 AC2 4 HOH A 604 HOH A 618 DUT C 202 HOH C 385 SITE 1 AC3 5 DUT A 501 HOH A 601 HOH A 712 HOH B 306 SITE 2 AC3 5 HOH B 369 SITE 1 AC4 25 THR B 84 GLY B 85 THR B 86 ILE B 87 SITE 2 AC4 25 ASN B 88 TYR B 91 LYS B 96 HOH B 304 SITE 3 AC4 25 HOH B 305 HOH B 309 HOH B 319 HOH B 320 SITE 4 AC4 25 HOH B 334 HOH B 335 HOH B 346 HOH B 398 SITE 5 AC4 25 HOH B 411 HOH B 420 ARG C 71 SER C 72 SITE 6 AC4 25 GLY C 73 GLN C 118 MG C 201 HOH C 305 SITE 7 AC4 25 HOH C 344 SITE 1 AC5 5 DUT B 202 HOH B 304 HOH B 411 HOH C 305 SITE 2 AC5 5 HOH C 344 SITE 1 AC6 23 ARG A 71 SER A 72 GLY A 73 GLN A 118 SITE 2 AC6 23 MG A 502 HOH A 604 HOH A 618 HOH A 641 SITE 3 AC6 23 HOH A 681 THR C 84 GLY C 85 THR C 86 SITE 4 AC6 23 ILE C 87 ASN C 88 TYR C 91 LYS C 96 SITE 5 AC6 23 HOH C 307 HOH C 308 HOH C 313 HOH C 337 SITE 6 AC6 23 HOH C 375 HOH C 381 HOH C 385 CRYST1 59.574 75.527 113.321 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016786 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013240 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008824 0.00000