HEADER METAL TRANSPORT 12-AUG-17 5Y6K TITLE HUMAN SERUM TRNASFERRIN BOUND TO A FLUORESCENT PROBE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SEROTRANSFERRIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TRANSFERRIN,BETA-1 METAL-BINDING GLOBULIN,SIDEROPHILIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606 KEYWDS FLUORESCENT, PROBE, TRANSFERRIN, METAL TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR N.JIANG,T.CHENG,M.WANG,G.C.F.CHAN,L.JIN,H.LI,H.SUN REVDAT 4 13-NOV-24 5Y6K 1 REMARK REVDAT 3 22-NOV-23 5Y6K 1 REMARK REVDAT 2 07-FEB-18 5Y6K 1 JRNL REVDAT 1 24-JAN-18 5Y6K 0 JRNL AUTH N.JIANG,T.CHENG,M.WANG,G.C.CHAN,L.JIN,H.LI,H.SUN JRNL TITL TRACKING IRON-ASSOCIATED PROTEOMES IN PATHOGENS BY A JRNL TITL 2 FLUORESCENCE APPROACH. JRNL REF METALLOMICS V. 10 77 2018 JRNL REFN ESSN 1756-591X JRNL PMID 29323384 JRNL DOI 10.1039/C7MT00275K REMARK 2 REMARK 2 RESOLUTION. 2.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 103.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 25317 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1283 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.86 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.93 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1490 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.03 REMARK 3 BIN R VALUE (WORKING SET) : 0.1920 REMARK 3 BIN FREE R VALUE SET COUNT : 73 REMARK 3 BIN FREE R VALUE : 0.2860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4997 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 77 REMARK 3 SOLVENT ATOMS : 1 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.82000 REMARK 3 B22 (A**2) : 1.84000 REMARK 3 B33 (A**2) : 1.98000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.308 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.221 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 25.784 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.899 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5199 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4680 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7033 ; 1.381 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10904 ; 1.019 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 645 ; 5.951 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 226 ;35.643 ;24.425 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 862 ;17.343 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;15.959 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 746 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5797 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1040 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5158 ; 3.851 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5031 ;62.931 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 92 REMARK 3 RESIDUE RANGE : A 247 A 331 REMARK 3 ORIGIN FOR THE GROUP (A): 15.1791 13.5798 -10.9654 REMARK 3 T TENSOR REMARK 3 T11: 0.1538 T22: 0.0730 REMARK 3 T33: 0.0238 T12: 0.0008 REMARK 3 T13: 0.0017 T23: -0.0023 REMARK 3 L TENSOR REMARK 3 L11: 0.0747 L22: 0.0620 REMARK 3 L33: 0.0799 L12: 0.0425 REMARK 3 L13: 0.0758 L23: 0.0343 REMARK 3 S TENSOR REMARK 3 S11: 0.0029 S12: -0.0193 S13: 0.0078 REMARK 3 S21: 0.0010 S22: -0.0122 S23: 0.0069 REMARK 3 S31: 0.0024 S32: -0.0119 S33: 0.0092 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 93 A 246 REMARK 3 ORIGIN FOR THE GROUP (A): 14.0371 18.6410 18.7161 REMARK 3 T TENSOR REMARK 3 T11: 0.1496 T22: 0.0731 REMARK 3 T33: 0.0382 T12: -0.0025 REMARK 3 T13: 0.0054 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.0065 L22: 0.1370 REMARK 3 L33: 0.0496 L12: -0.0280 REMARK 3 L13: -0.0145 L23: 0.0675 REMARK 3 S TENSOR REMARK 3 S11: 0.0049 S12: 0.0060 S13: -0.0048 REMARK 3 S21: 0.0005 S22: 0.0016 S23: 0.0270 REMARK 3 S31: -0.0008 S32: -0.0121 S33: -0.0066 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 339 A 425 REMARK 3 ORIGIN FOR THE GROUP (A): 40.1064 34.5123 1.2717 REMARK 3 T TENSOR REMARK 3 T11: 0.1340 T22: 0.0552 REMARK 3 T33: 0.0169 T12: 0.0173 REMARK 3 T13: 0.0085 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 0.2786 L22: 0.0499 REMARK 3 L33: 0.0289 L12: 0.1133 REMARK 3 L13: 0.0623 L23: 0.0320 REMARK 3 S TENSOR REMARK 3 S11: -0.0064 S12: -0.0121 S13: -0.0170 REMARK 3 S21: 0.0166 S22: 0.0054 S23: -0.0038 REMARK 3 S31: 0.0428 S32: 0.0026 S33: 0.0011 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 426 A 583 REMARK 3 ORIGIN FOR THE GROUP (A): 35.4909 55.6132 -14.6733 REMARK 3 T TENSOR REMARK 3 T11: 0.1425 T22: 0.0705 REMARK 3 T33: 0.0255 T12: 0.0005 REMARK 3 T13: 0.0014 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 0.1088 L22: 0.0753 REMARK 3 L33: 0.0133 L12: 0.0891 REMARK 3 L13: 0.0296 L23: 0.0212 REMARK 3 S TENSOR REMARK 3 S11: 0.0051 S12: 0.0042 S13: 0.0179 REMARK 3 S21: 0.0033 S22: -0.0088 S23: 0.0146 REMARK 3 S31: 0.0032 S32: 0.0133 S33: 0.0036 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 584 A 679 REMARK 3 ORIGIN FOR THE GROUP (A): 33.6570 40.9063 3.1849 REMARK 3 T TENSOR REMARK 3 T11: 0.1331 T22: 0.0654 REMARK 3 T33: 0.0007 T12: 0.0094 REMARK 3 T13: 0.0002 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.3096 L22: 0.1799 REMARK 3 L33: 0.1074 L12: 0.0302 REMARK 3 L13: 0.1811 L23: 0.0086 REMARK 3 S TENSOR REMARK 3 S11: 0.0091 S12: 0.0004 S13: 0.0047 REMARK 3 S21: 0.0098 S22: -0.0116 S23: 0.0109 REMARK 3 S31: 0.0134 S32: -0.0037 S33: 0.0024 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5Y6K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1300004756. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93001 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27148 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 103.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.10 REMARK 200 R MERGE FOR SHELL (I) : 0.79400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4X1B REMARK 200 REMARK 200 REMARK: PALE-RED CRYSTALS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PIPES-NA 0.1M PH 6.6, DISODIUM REMARK 280 MALONATE 8MM, PEG 3350 17%, GLYCEROL 18%, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.77700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.77700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 69.00600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 77.87600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 69.00600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 77.87600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 53.77700 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 69.00600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 77.87600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 53.77700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 69.00600 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 77.87600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 1 REMARK 465 PRO A 2 REMARK 465 GLU A 333 REMARK 465 ALA A 334 REMARK 465 PRO A 335 REMARK 465 THR A 336 REMARK 465 ASP A 337 REMARK 465 GLU A 338 REMARK 465 LYS A 414 REMARK 465 SER A 415 REMARK 465 ASP A 416 REMARK 465 ASN A 417 REMARK 465 CYS A 418 REMARK 465 GLU A 419 REMARK 465 ASP A 420 REMARK 465 THR A 421 REMARK 465 PRO A 422 REMARK 465 GLU A 423 REMARK 465 VAL A 612 REMARK 465 THR A 613 REMARK 465 ASP A 614 REMARK 465 CYS A 615 REMARK 465 SER A 616 REMARK 465 GLY A 617 REMARK 465 ASN A 618 REMARK 465 PHE A 619 REMARK 465 CYS A 620 REMARK 465 LEU A 621 REMARK 465 PHE A 622 REMARK 465 ARG A 623 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 88 CG CD CE NZ REMARK 470 HIS A 350 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 365 CG CD CE NZ REMARK 470 ILE A 429 CG1 CG2 CD1 REMARK 470 ASP A 491 CG OD1 OD2 REMARK 470 LYS A 599 CG CD CE NZ REMARK 470 GLN A 603 CG CD OE1 NE2 REMARK 470 HIS A 606 CG ND1 CD2 CE1 NE2 REMARK 470 ASP A 633 CG OD1 OD2 REMARK 470 HIS A 642 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 4 65.28 -105.12 REMARK 500 VAL A 80 -36.66 -132.75 REMARK 500 SER A 87 -174.19 173.06 REMARK 500 TRP A 128 -54.99 -132.63 REMARK 500 CYS A 174 79.95 -151.35 REMARK 500 CYS A 179 31.25 -98.33 REMARK 500 VAL A 205 -151.38 -133.87 REMARK 500 HIS A 207 -19.74 -44.23 REMARK 500 CYS A 241 75.53 -158.42 REMARK 500 LYS A 259 69.19 -104.34 REMARK 500 LEU A 294 -51.17 74.56 REMARK 500 LYS A 340 152.71 71.22 REMARK 500 ALA A 436 93.35 -66.40 REMARK 500 ALA A 453 147.22 -175.47 REMARK 500 THR A 457 -70.94 -52.28 REMARK 500 TRP A 460 -59.22 -144.54 REMARK 500 LYS A 527 -16.55 -154.33 REMARK 500 PRO A 570 170.23 -57.03 REMARK 500 GLU A 573 56.03 -111.79 REMARK 500 GLN A 604 3.94 -66.27 REMARK 500 PHE A 608 21.16 -143.31 REMARK 500 THR A 626 -105.41 -98.56 REMARK 500 LEU A 630 -61.74 66.41 REMARK 500 HIS A 642 -95.64 52.84 REMARK 500 ARG A 644 48.97 -105.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 8R6 A 704 REMARK 610 8R6 A 705 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 703 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 188 OH REMARK 620 2 8R6 A 704 N1 130.7 REMARK 620 3 8R6 A 704 O5 101.5 90.2 REMARK 620 4 8R6 A 704 O13 142.4 86.6 69.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 702 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 392 OD1 REMARK 620 2 TYR A 426 OH 85.3 REMARK 620 3 TYR A 517 OH 166.6 85.1 REMARK 620 4 HIS A 585 NE2 93.6 112.2 98.7 REMARK 620 5 MLI A 701 O7 80.0 80.0 89.1 165.9 REMARK 620 6 MLI A 701 O9 95.5 164.6 91.3 83.2 85.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MLI A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8R6 A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8R6 A 705 DBREF 5Y6K A 1 679 UNP P02787 TRFE_HUMAN 20 698 SEQRES 1 A 679 VAL PRO ASP LYS THR VAL ARG TRP CYS ALA VAL SER GLU SEQRES 2 A 679 HIS GLU ALA THR LYS CYS GLN SER PHE ARG ASP HIS MET SEQRES 3 A 679 LYS SER VAL ILE PRO SER ASP GLY PRO SER VAL ALA CYS SEQRES 4 A 679 VAL LYS LYS ALA SER TYR LEU ASP CYS ILE ARG ALA ILE SEQRES 5 A 679 ALA ALA ASN GLU ALA ASP ALA VAL THR LEU ASP ALA GLY SEQRES 6 A 679 LEU VAL TYR ASP ALA TYR LEU ALA PRO ASN ASN LEU LYS SEQRES 7 A 679 PRO VAL VAL ALA GLU PHE TYR GLY SER LYS GLU ASP PRO SEQRES 8 A 679 GLN THR PHE TYR TYR ALA VAL ALA VAL VAL LYS LYS ASP SEQRES 9 A 679 SER GLY PHE GLN MET ASN GLN LEU ARG GLY LYS LYS SER SEQRES 10 A 679 CYS HIS THR GLY LEU GLY ARG SER ALA GLY TRP ASN ILE SEQRES 11 A 679 PRO ILE GLY LEU LEU TYR CYS ASP LEU PRO GLU PRO ARG SEQRES 12 A 679 LYS PRO LEU GLU LYS ALA VAL ALA ASN PHE PHE SER GLY SEQRES 13 A 679 SER CYS ALA PRO CYS ALA ASP GLY THR ASP PHE PRO GLN SEQRES 14 A 679 LEU CYS GLN LEU CYS PRO GLY CYS GLY CYS SER THR LEU SEQRES 15 A 679 ASN GLN TYR PHE GLY TYR SER GLY ALA PHE LYS CYS LEU SEQRES 16 A 679 LYS ASP GLY ALA GLY ASP VAL ALA PHE VAL LYS HIS SER SEQRES 17 A 679 THR ILE PHE GLU ASN LEU ALA ASN LYS ALA ASP ARG ASP SEQRES 18 A 679 GLN TYR GLU LEU LEU CYS LEU ASP ASN THR ARG LYS PRO SEQRES 19 A 679 VAL ASP GLU TYR LYS ASP CYS HIS LEU ALA GLN VAL PRO SEQRES 20 A 679 SER HIS THR VAL VAL ALA ARG SER MET GLY GLY LYS GLU SEQRES 21 A 679 ASP LEU ILE TRP GLU LEU LEU ASN GLN ALA GLN GLU HIS SEQRES 22 A 679 PHE GLY LYS ASP LYS SER LYS GLU PHE GLN LEU PHE SER SEQRES 23 A 679 SER PRO HIS GLY LYS ASP LEU LEU PHE LYS ASP SER ALA SEQRES 24 A 679 HIS GLY PHE LEU LYS VAL PRO PRO ARG MET ASP ALA LYS SEQRES 25 A 679 MET TYR LEU GLY TYR GLU TYR VAL THR ALA ILE ARG ASN SEQRES 26 A 679 LEU ARG GLU GLY THR CYS PRO GLU ALA PRO THR ASP GLU SEQRES 27 A 679 CYS LYS PRO VAL LYS TRP CYS ALA LEU SER HIS HIS GLU SEQRES 28 A 679 ARG LEU LYS CYS ASP GLU TRP SER VAL ASN SER VAL GLY SEQRES 29 A 679 LYS ILE GLU CYS VAL SER ALA GLU THR THR GLU ASP CYS SEQRES 30 A 679 ILE ALA LYS ILE MET ASN GLY GLU ALA ASP ALA MET SER SEQRES 31 A 679 LEU ASP GLY GLY PHE VAL TYR ILE ALA GLY LYS CYS GLY SEQRES 32 A 679 LEU VAL PRO VAL LEU ALA GLU ASN TYR ASN LYS SER ASP SEQRES 33 A 679 ASN CYS GLU ASP THR PRO GLU ALA GLY TYR PHE ALA ILE SEQRES 34 A 679 ALA VAL VAL LYS LYS SER ALA SER ASP LEU THR TRP ASP SEQRES 35 A 679 ASN LEU LYS GLY LYS LYS SER CYS HIS THR ALA VAL GLY SEQRES 36 A 679 ARG THR ALA GLY TRP ASN ILE PRO MET GLY LEU LEU TYR SEQRES 37 A 679 ASN LYS ILE ASN HIS CYS ARG PHE ASP GLU PHE PHE SER SEQRES 38 A 679 GLU GLY CYS ALA PRO GLY SER LYS LYS ASP SER SER LEU SEQRES 39 A 679 CYS LYS LEU CYS MET GLY SER GLY LEU ASN LEU CYS GLU SEQRES 40 A 679 PRO ASN ASN LYS GLU GLY TYR TYR GLY TYR THR GLY ALA SEQRES 41 A 679 PHE ARG CYS LEU VAL GLU LYS GLY ASP VAL ALA PHE VAL SEQRES 42 A 679 LYS HIS GLN THR VAL PRO GLN ASN THR GLY GLY LYS ASN SEQRES 43 A 679 PRO ASP PRO TRP ALA LYS ASN LEU ASN GLU LYS ASP TYR SEQRES 44 A 679 GLU LEU LEU CYS LEU ASP GLY THR ARG LYS PRO VAL GLU SEQRES 45 A 679 GLU TYR ALA ASN CYS HIS LEU ALA ARG ALA PRO ASN HIS SEQRES 46 A 679 ALA VAL VAL THR ARG LYS ASP LYS GLU ALA CYS VAL HIS SEQRES 47 A 679 LYS ILE LEU ARG GLN GLN GLN HIS LEU PHE GLY SER ASN SEQRES 48 A 679 VAL THR ASP CYS SER GLY ASN PHE CYS LEU PHE ARG SER SEQRES 49 A 679 GLU THR LYS ASP LEU LEU PHE ARG ASP ASP THR VAL CYS SEQRES 50 A 679 LEU ALA LYS LEU HIS ASP ARG ASN THR TYR GLU LYS TYR SEQRES 51 A 679 LEU GLY GLU GLU TYR VAL LYS ALA VAL GLY ASN LEU ARG SEQRES 52 A 679 LYS CYS SER THR SER SER LEU LEU GLU ALA CYS THR PHE SEQRES 53 A 679 ARG ARG PRO HET MLI A 701 7 HET FE A 702 1 HET FE A 703 1 HET 8R6 A 704 34 HET 8R6 A 705 34 HETNAM MLI MALONATE ION HETNAM FE FE (III) ION HETNAM 8R6 (2S)-6-[2-(7-AZIDO-4-METHYL-2-OXIDANYLIDENE-CHROMEN-3- HETNAM 2 8R6 YL)ETHANOYLAMINO]-2-[BIS(2-HYDROXY-2-OXOETHYL) HETNAM 3 8R6 AMINO]HEXANOIC ACID FORMUL 2 MLI C3 H2 O4 2- FORMUL 3 FE 2(FE 3+) FORMUL 5 8R6 2(C22 H25 N5 O9) FORMUL 7 HOH *(H2 O) HELIX 1 AA1 SER A 12 SER A 28 1 17 HELIX 2 AA2 SER A 44 ALA A 54 1 11 HELIX 3 AA3 ASP A 63 LEU A 72 1 10 HELIX 4 AA4 GLN A 108 LEU A 112 5 5 HELIX 5 AA5 TRP A 128 LEU A 135 1 8 HELIX 6 AA6 TYR A 136 LEU A 139 5 4 HELIX 7 AA7 PRO A 145 ASN A 152 1 8 HELIX 8 AA8 PHE A 167 GLN A 172 5 6 HELIX 9 AA9 PHE A 186 ASP A 197 1 12 HELIX 10 AB1 ASN A 216 ASP A 221 1 6 HELIX 11 AB2 ASP A 236 CYS A 241 5 6 HELIX 12 AB3 LYS A 259 GLY A 275 1 17 HELIX 13 AB4 ASP A 310 GLY A 316 1 7 HELIX 14 AB5 GLY A 316 GLY A 329 1 14 HELIX 15 AB6 SER A 348 SER A 362 1 15 HELIX 16 AB7 THR A 373 GLY A 384 1 12 HELIX 17 AB8 ASP A 392 CYS A 402 1 11 HELIX 18 AB9 TRP A 460 ASN A 472 1 13 HELIX 19 AC1 ARG A 475 PHE A 480 1 6 HELIX 20 AC2 SER A 492 LYS A 496 5 5 HELIX 21 AC3 SER A 501 LEU A 505 5 5 HELIX 22 AC4 TYR A 515 LYS A 527 1 13 HELIX 23 AC5 GLN A 536 ASN A 541 1 6 HELIX 24 AC6 ASP A 548 ASN A 553 1 6 HELIX 25 AC7 ASN A 555 LYS A 557 5 3 HELIX 26 AC8 GLU A 573 CYS A 577 5 5 HELIX 27 AC9 ARG A 590 ASP A 592 5 3 HELIX 28 AD1 LYS A 593 LEU A 607 1 15 HELIX 29 AD2 THR A 646 GLY A 652 1 7 HELIX 30 AD3 GLY A 652 ARG A 663 1 12 HELIX 31 AD4 LYS A 664 SER A 666 5 3 HELIX 32 AD5 SER A 668 ARG A 678 1 11 SHEET 1 AA1 2 THR A 5 ALA A 10 0 SHEET 2 AA1 2 SER A 36 LYS A 41 1 O ALA A 38 N TRP A 8 SHEET 1 AA2 4 VAL A 60 LEU A 62 0 SHEET 2 AA2 4 THR A 250 ARG A 254 -1 O THR A 250 N LEU A 62 SHEET 3 AA2 4 LEU A 77 PHE A 84 -1 N LYS A 78 O ALA A 253 SHEET 4 AA2 4 GLY A 301 LYS A 304 -1 O LEU A 303 N ALA A 82 SHEET 1 AA3 6 GLY A 156 CYS A 158 0 SHEET 2 AA3 6 LYS A 116 HIS A 119 1 N HIS A 119 O CYS A 158 SHEET 3 AA3 6 VAL A 202 LYS A 206 1 O PHE A 204 N CYS A 118 SHEET 4 AA3 6 PHE A 94 LYS A 102 -1 N VAL A 100 O ALA A 203 SHEET 5 AA3 6 TYR A 223 LEU A 226 -1 O GLU A 224 N VAL A 101 SHEET 6 AA3 6 ARG A 232 PRO A 234 -1 O LYS A 233 N LEU A 225 SHEET 1 AA4 5 GLY A 156 CYS A 158 0 SHEET 2 AA4 5 LYS A 116 HIS A 119 1 N HIS A 119 O CYS A 158 SHEET 3 AA4 5 VAL A 202 LYS A 206 1 O PHE A 204 N CYS A 118 SHEET 4 AA4 5 PHE A 94 LYS A 102 -1 N VAL A 100 O ALA A 203 SHEET 5 AA4 5 ALA A 244 PRO A 247 -1 O VAL A 246 N TYR A 95 SHEET 1 AA5 2 VAL A 342 ALA A 346 0 SHEET 2 AA5 2 ILE A 366 SER A 370 1 O VAL A 369 N TRP A 344 SHEET 1 AA6 4 MET A 389 LEU A 391 0 SHEET 2 AA6 4 ALA A 586 THR A 589 -1 O ALA A 586 N LEU A 391 SHEET 3 AA6 4 VAL A 405 ASN A 411 -1 N LEU A 408 O VAL A 587 SHEET 4 AA6 4 CYS A 637 ALA A 639 -1 O ALA A 639 N ALA A 409 SHEET 1 AA7 6 GLY A 483 CYS A 484 0 SHEET 2 AA7 6 SER A 449 HIS A 451 1 N HIS A 451 O CYS A 484 SHEET 3 AA7 6 VAL A 530 LYS A 534 1 O PHE A 532 N CYS A 450 SHEET 4 AA7 6 PHE A 427 LYS A 433 -1 N VAL A 431 O ALA A 531 SHEET 5 AA7 6 TYR A 559 LEU A 562 -1 O GLU A 560 N VAL A 432 SHEET 6 AA7 6 ARG A 568 PRO A 570 -1 O LYS A 569 N LEU A 561 SHEET 1 AA8 5 GLY A 483 CYS A 484 0 SHEET 2 AA8 5 SER A 449 HIS A 451 1 N HIS A 451 O CYS A 484 SHEET 3 AA8 5 VAL A 530 LYS A 534 1 O PHE A 532 N CYS A 450 SHEET 4 AA8 5 PHE A 427 LYS A 433 -1 N VAL A 431 O ALA A 531 SHEET 5 AA8 5 ALA A 580 ARG A 581 -1 O ALA A 580 N ALA A 428 SSBOND 1 CYS A 9 CYS A 48 1555 1555 2.12 SSBOND 2 CYS A 19 CYS A 39 1555 1555 2.16 SSBOND 3 CYS A 118 CYS A 194 1555 1555 2.05 SSBOND 4 CYS A 137 CYS A 331 1555 1555 2.12 SSBOND 5 CYS A 158 CYS A 174 1555 1555 2.02 SSBOND 6 CYS A 161 CYS A 179 1555 1555 1.99 SSBOND 7 CYS A 171 CYS A 177 1555 1555 2.04 SSBOND 8 CYS A 227 CYS A 241 1555 1555 2.06 SSBOND 9 CYS A 339 CYS A 596 1555 1555 2.05 SSBOND 10 CYS A 345 CYS A 377 1555 1555 2.04 SSBOND 11 CYS A 355 CYS A 368 1555 1555 2.05 SSBOND 12 CYS A 402 CYS A 674 1555 1555 2.06 SSBOND 13 CYS A 450 CYS A 523 1555 1555 2.05 SSBOND 14 CYS A 474 CYS A 665 1555 1555 2.07 SSBOND 15 CYS A 484 CYS A 498 1555 1555 2.07 SSBOND 16 CYS A 495 CYS A 506 1555 1555 2.01 SSBOND 17 CYS A 563 CYS A 577 1555 1555 2.04 LINK OH TYR A 188 FE FE A 703 1555 1555 2.11 LINK OD1 ASP A 392 FE FE A 702 1555 1555 2.40 LINK OH TYR A 426 FE FE A 702 1555 1555 2.26 LINK OH TYR A 517 FE FE A 702 1555 1555 1.94 LINK NE2 HIS A 585 FE FE A 702 1555 1555 2.18 LINK O7 MLI A 701 FE FE A 702 1555 1555 2.02 LINK O9 MLI A 701 FE FE A 702 1555 1555 1.84 LINK FE FE A 703 N1 8R6 A 704 1555 1555 1.99 LINK FE FE A 703 O5 8R6 A 704 1555 1555 2.21 LINK FE FE A 703 O13 8R6 A 704 1555 1555 2.20 CISPEP 1 ALA A 73 PRO A 74 0 7.19 CISPEP 2 GLU A 141 PRO A 142 0 5.23 CISPEP 3 LYS A 144 PRO A 145 0 -5.85 CISPEP 4 GLY A 258 LYS A 259 0 6.29 SITE 1 AC1 10 ASP A 392 TYR A 426 THR A 452 ARG A 456 SITE 2 AC1 10 THR A 457 ALA A 458 GLY A 459 TYR A 517 SITE 3 AC1 10 HIS A 585 FE A 702 SITE 1 AC2 6 ASP A 392 TYR A 426 THR A 457 TYR A 517 SITE 2 AC2 6 HIS A 585 MLI A 701 SITE 1 AC3 2 TYR A 188 8R6 A 704 SITE 1 AC4 6 ASP A 63 TYR A 188 LYS A 206 LYS A 296 SITE 2 AC4 6 FE A 703 HOH A 801 SITE 1 AC5 2 ASP A 491 ARG A 602 CRYST1 138.012 155.752 107.554 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007246 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006420 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009298 0.00000