HEADER HYDROLASE 12-AUG-17 5Y6M TITLE ZIKA VIRUS HELICASE IN COMPLEX WITH ADP-ALF3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HELICASE DOMAIN FROM GENOME POLYPROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1682-2119; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZIKA VIRUS (STRAIN MR 766); SOURCE 3 ORGANISM_COMMON: ZIKV; SOURCE 4 ORGANISM_TAXID: 64320; SOURCE 5 STRAIN: MR 766; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 536; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 362663; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: 536 KEYWDS ZIKA VIRAL HELICASE, HYDROLYSIS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR X.Y.YANG,C.CHEN,H.L.TIAN,H.CHI,Z.Y.MU,T.Q.ZHANG,K.L.YANG,Q.ZHAO, AUTHOR 2 X.H.LIU,Z.F.WANG,X.Y.JI,H.T.YANG REVDAT 3 22-NOV-23 5Y6M 1 LINK REVDAT 2 17-OCT-18 5Y6M 1 JRNL REVDAT 1 04-JUL-18 5Y6M 0 JRNL AUTH X.YANG,C.CHEN,H.TIAN,H.CHI,Z.MU,T.ZHANG,K.YANG,Q.ZHAO,X.LIU, JRNL AUTH 2 Z.WANG,X.JI,H.YANG JRNL TITL MECHANISM OF ATP HYDROLYSIS BY THE ZIKA VIRUS HELICASE. JRNL REF FASEB J. V. 32 5250 2018 JRNL REFN ESSN 1530-6860 JRNL PMID 29913559 JRNL DOI 10.1096/FJ.201701140R REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2148: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 3 NUMBER OF REFLECTIONS : 26034 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 1286 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.2997 - 4.1635 0.88 2708 134 0.1438 0.1689 REMARK 3 2 4.1635 - 3.3050 0.90 2726 134 0.1471 0.1840 REMARK 3 3 3.3050 - 2.8874 0.92 2782 129 0.1823 0.2330 REMARK 3 4 2.8874 - 2.6234 0.90 2701 149 0.1957 0.2681 REMARK 3 5 2.6234 - 2.4354 0.93 2777 143 0.1988 0.2386 REMARK 3 6 2.4354 - 2.2918 0.94 2822 169 0.2075 0.2694 REMARK 3 7 2.2918 - 2.1770 0.93 2780 142 0.2119 0.2865 REMARK 3 8 2.1770 - 2.0823 0.92 2770 120 0.2275 0.2638 REMARK 3 9 2.0823 - 2.0021 0.91 2682 166 0.2302 0.2781 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 3520 REMARK 3 ANGLE : 1.271 4776 REMARK 3 CHIRALITY : 0.066 530 REMARK 3 PLANARITY : 0.008 613 REMARK 3 DIHEDRAL : 16.325 2123 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 61.7583 14.9859 78.5940 REMARK 3 T TENSOR REMARK 3 T11: 0.1183 T22: 0.1108 REMARK 3 T33: 0.1195 T12: 0.0035 REMARK 3 T13: 0.0087 T23: 0.0192 REMARK 3 L TENSOR REMARK 3 L11: 0.2924 L22: 0.4849 REMARK 3 L33: 0.5077 L12: -0.0498 REMARK 3 L13: -0.0465 L23: 0.3037 REMARK 3 S TENSOR REMARK 3 S11: 0.0239 S12: 0.0260 S13: 0.0525 REMARK 3 S21: -0.0754 S22: -0.0462 S23: -0.0109 REMARK 3 S31: -0.0395 S32: -0.0168 S33: 0.0007 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5Y6M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1300004064. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97778 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26053 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5GJC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS (PH 5.5), 25% W/V REMARK 280 POLYETHYLENE GLYCOL 3350, MICROBATCH, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.57600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 180 REMARK 465 PRO A 181 REMARK 465 SER A 182 REMARK 465 ALA A 247 REMARK 465 VAL A 248 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 185 CG CD CE NZ REMARK 470 GLU A 256 CG CD OE1 OE2 REMARK 470 ARG A 388 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 816 O HOH A 950 1.80 REMARK 500 O GLN A 272 O HOH A 801 1.80 REMARK 500 O HOH A 970 O HOH A 1043 1.81 REMARK 500 O ARG A 428 O HOH A 802 1.87 REMARK 500 O HOH A 1054 O HOH A 1069 1.87 REMARK 500 NH1 ARG A 583 O HOH A 803 1.88 REMARK 500 O HOH A 831 O HOH A 1022 1.92 REMARK 500 O HOH A 935 O HOH A 1015 1.98 REMARK 500 O HOH A 891 O HOH A 942 1.98 REMARK 500 O2A ADP A 702 O HOH A 804 2.01 REMARK 500 O HOH A 998 O HOH A 1018 2.06 REMARK 500 O ARG A 388 O HOH A 805 2.07 REMARK 500 O HOH A 833 O HOH A 1059 2.07 REMARK 500 O GLU A 392 O HOH A 806 2.08 REMARK 500 NH2 ARG A 588 O HOH A 807 2.09 REMARK 500 O2' ADP A 702 O HOH A 808 2.12 REMARK 500 N ASN A 249 O HOH A 809 2.14 REMARK 500 O HOH A 974 O HOH A 1094 2.15 REMARK 500 O GLN A 401 O HOH A 810 2.17 REMARK 500 O HOH A 1049 O HOH A 1064 2.17 REMARK 500 O HOH A 1020 O HOH A 1073 2.18 REMARK 500 O ALA A 512 O HOH A 811 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 186 CD LYS A 186 CE -0.172 REMARK 500 ARG A 275 NE ARG A 275 CZ -0.118 REMARK 500 ARG A 275 CZ ARG A 275 NH1 -0.112 REMARK 500 ARG A 275 CZ ARG A 275 NH2 -0.086 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 269 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 275 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 187 32.70 -88.19 REMARK 500 MET A 244 48.27 -104.14 REMARK 500 ILE A 257 -47.50 -142.06 REMARK 500 ASP A 354 40.18 -76.54 REMARK 500 LEU A 499 -82.78 -115.61 REMARK 500 LYS A 537 -77.15 -94.84 REMARK 500 LYS A 591 79.92 -150.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1102 DISTANCE = 6.64 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 701 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 201 OG1 REMARK 620 2 ADP A 702 O3B 84.2 REMARK 620 3 AF3 A 703 F2 166.2 90.2 REMARK 620 4 HOH A 804 O 87.1 74.3 79.2 REMARK 620 5 HOH A 852 O 98.3 106.7 95.4 174.6 REMARK 620 6 HOH A 877 O 63.7 143.0 116.7 85.7 96.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AF3 A 703 DBREF1 5Y6M A 180 617 UNP A0A140GMI3_ZIKV DBREF2 5Y6M A A0A140GMI3 1682 2119 SEQRES 1 A 438 GLU PRO SER MET LEU LYS LYS LYS GLN LEU THR VAL LEU SEQRES 2 A 438 ASP LEU HIS PRO GLY ALA GLY LYS THR ARG ARG VAL LEU SEQRES 3 A 438 PRO GLU ILE VAL ARG GLU ALA ILE LYS THR ARG LEU ARG SEQRES 4 A 438 THR VAL ILE LEU ALA PRO THR ARG VAL VAL ALA ALA GLU SEQRES 5 A 438 MET GLU GLU ALA LEU ARG GLY LEU PRO VAL ARG TYR MET SEQRES 6 A 438 THR THR ALA VAL ASN VAL THR HIS SER GLY THR GLU ILE SEQRES 7 A 438 VAL ASP LEU MET CYS HIS ALA THR PHE THR SER ARG LEU SEQRES 8 A 438 LEU GLN PRO ILE ARG VAL PRO ASN TYR ASN LEU TYR ILE SEQRES 9 A 438 MET ASP GLU ALA HIS PHE THR ASP PRO SER SER ILE ALA SEQRES 10 A 438 ALA ARG GLY TYR ILE SER THR ARG VAL GLU MET GLY GLU SEQRES 11 A 438 ALA ALA ALA ILE PHE MET THR ALA THR PRO PRO GLY THR SEQRES 12 A 438 ARG ASP ALA PHE PRO ASP SER ASN SER PRO ILE MET ASP SEQRES 13 A 438 THR GLU VAL GLU VAL PRO GLU ARG ALA TRP SER SER GLY SEQRES 14 A 438 PHE ASP TRP VAL THR ASP HIS SER GLY LYS THR VAL TRP SEQRES 15 A 438 PHE VAL PRO SER VAL ARG ASN GLY ASN GLU ILE ALA ALA SEQRES 16 A 438 CYS LEU THR LYS ALA GLY LYS ARG VAL ILE GLN LEU SER SEQRES 17 A 438 ARG LYS THR PHE GLU THR GLU PHE GLN LYS THR LYS HIS SEQRES 18 A 438 GLN GLU TRP ASP PHE VAL VAL THR THR ASP ILE SER GLU SEQRES 19 A 438 MET GLY ALA ASN PHE LYS ALA ASP ARG VAL ILE ASP SER SEQRES 20 A 438 ARG ARG CYS LEU LYS PRO VAL ILE LEU ASP GLY GLU ARG SEQRES 21 A 438 VAL ILE LEU ALA GLY PRO MET PRO VAL THR HIS ALA SER SEQRES 22 A 438 ALA ALA GLN ARG ARG GLY ARG ILE GLY ARG ASN PRO ASN SEQRES 23 A 438 LYS PRO GLY ASP GLU TYR LEU TYR GLY GLY GLY CYS ALA SEQRES 24 A 438 GLU THR ASP GLU ASP HIS ALA HIS TRP LEU GLU ALA ARG SEQRES 25 A 438 MET LEU LEU ASP ASN ILE TYR LEU GLN ASP GLY LEU ILE SEQRES 26 A 438 ALA SER LEU TYR ARG PRO GLU ALA ASP LYS VAL ALA ALA SEQRES 27 A 438 ILE GLU GLY GLU PHE LYS LEU ARG THR GLU GLN ARG LYS SEQRES 28 A 438 THR PHE VAL GLU LEU MET LYS ARG GLY ASP LEU PRO VAL SEQRES 29 A 438 TRP LEU ALA TYR GLN VAL ALA SER ALA GLY ILE THR TYR SEQRES 30 A 438 THR ASP ARG ARG TRP CYS PHE ASP GLY THR THR ASN ASN SEQRES 31 A 438 THR ILE MET GLU ASP SER VAL PRO ALA GLU VAL TRP THR SEQRES 32 A 438 ARG HIS GLY GLU LYS ARG VAL LEU LYS PRO ARG TRP MET SEQRES 33 A 438 ASP ALA ARG VAL CYS SER ASP HIS ALA ALA LEU LYS SER SEQRES 34 A 438 PHE LYS GLU PHE ALA ALA GLY LYS ARG HET MN A 701 1 HET ADP A 702 27 HET AF3 A 703 4 HETNAM MN MANGANESE (II) ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM AF3 ALUMINUM FLUORIDE FORMUL 2 MN MN 2+ FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 AF3 AL F3 FORMUL 5 HOH *302(H2 O) HELIX 1 AA1 ARG A 203 ARG A 216 1 14 HELIX 2 AA2 THR A 225 LEU A 236 1 12 HELIX 3 AA3 HIS A 263 GLN A 272 1 10 HELIX 4 AA4 ASP A 291 MET A 307 1 17 HELIX 5 AA5 PHE A 349 ASP A 354 1 6 HELIX 6 AA6 SER A 365 ALA A 379 1 15 HELIX 7 AA7 SER A 387 PHE A 395 1 9 HELIX 8 AA8 GLN A 396 LYS A 399 5 4 HELIX 9 AA9 ASP A 410 MET A 414 5 5 HELIX 10 AB1 THR A 449 GLY A 458 1 10 HELIX 11 AB2 ALA A 485 ASP A 495 1 11 HELIX 12 AB3 TYR A 508 VAL A 515 5 8 HELIX 13 AB4 ARG A 525 LYS A 537 1 13 HELIX 14 AB5 PRO A 542 ALA A 552 1 11 HELIX 15 AB6 ARG A 559 ASP A 564 5 6 HELIX 16 AB7 THR A 566 THR A 570 5 5 HELIX 17 AB8 ARG A 598 CYS A 600 5 3 HELIX 18 AB9 ASP A 602 ALA A 614 1 13 SHEET 1 AA1 6 LEU A 189 LEU A 192 0 SHEET 2 AA1 6 ALA A 311 MET A 315 1 O ALA A 312 N THR A 190 SHEET 3 AA1 6 LEU A 281 ASP A 285 1 N MET A 284 O MET A 315 SHEET 4 AA1 6 THR A 219 ALA A 223 1 N LEU A 222 O ILE A 283 SHEET 5 AA1 6 VAL A 258 CYS A 262 1 O ASP A 259 N ILE A 221 SHEET 6 AA1 6 VAL A 241 TYR A 243 1 N ARG A 242 O VAL A 258 SHEET 1 AA2 6 ILE A 333 GLU A 337 0 SHEET 2 AA2 6 ASP A 469 TYR A 473 1 O TYR A 471 N THR A 336 SHEET 3 AA2 6 ARG A 422 ASP A 425 1 N VAL A 423 O LEU A 472 SHEET 4 AA2 6 THR A 359 PHE A 362 1 N PHE A 362 O ILE A 424 SHEET 5 AA2 6 PHE A 405 THR A 408 1 O VAL A 406 N TRP A 361 SHEET 6 AA2 6 VAL A 383 LEU A 386 1 N ILE A 384 O VAL A 407 SHEET 1 AA3 3 ARG A 428 LEU A 435 0 SHEET 2 AA3 3 ARG A 439 PRO A 447 -1 O ALA A 443 N LYS A 431 SHEET 3 AA3 3 MET A 595 ASP A 596 1 O MET A 595 N VAL A 440 SHEET 1 AA4 2 MET A 572 GLU A 573 0 SHEET 2 AA4 2 VAL A 576 PRO A 577 -1 O VAL A 576 N GLU A 573 SHEET 1 AA5 2 GLU A 579 TRP A 581 0 SHEET 2 AA5 2 LYS A 587 VAL A 589 -1 O ARG A 588 N VAL A 580 LINK OG1 THR A 201 MN MN A 701 1555 1555 2.48 LINK MN MN A 701 O3B ADP A 702 1555 1555 2.17 LINK MN MN A 701 F2 AF3 A 703 1555 1555 2.37 LINK MN MN A 701 O HOH A 804 1555 1555 2.74 LINK MN MN A 701 O HOH A 852 1555 1555 2.58 LINK MN MN A 701 O HOH A 877 1555 1555 2.54 SITE 1 AC1 7 THR A 201 GLU A 286 ADP A 702 AF3 A 703 SITE 2 AC1 7 HOH A 804 HOH A 852 HOH A 877 SITE 1 AC2 12 GLY A 197 ALA A 198 GLY A 199 LYS A 200 SITE 2 AC2 12 THR A 201 ARG A 202 ASN A 330 ARG A 462 SITE 3 AC2 12 MN A 701 AF3 A 703 HOH A 804 HOH A 808 SITE 1 AC3 10 PRO A 196 LYS A 200 GLU A 286 ALA A 317 SITE 2 AC3 10 ARG A 459 ARG A 462 MN A 701 ADP A 702 SITE 3 AC3 10 HOH A 900 HOH A1052 CRYST1 53.638 69.152 57.819 90.00 94.14 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018643 0.000000 0.001349 0.00000 SCALE2 0.000000 0.014461 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017341 0.00000