data_5Y7M # _entry.id 5Y7M # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5Y7M pdb_00005y7m 10.2210/pdb5y7m/pdb WWPDB D_1300004629 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-02-07 2 'Structure model' 1 1 2020-02-26 3 'Structure model' 1 2 2023-11-22 4 'Structure model' 1 3 2024-03-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Refinement description' 5 4 'Structure model' 'Source and taxonomy' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' reflns_shell 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' database_2 5 3 'Structure model' pdbx_initial_refinement_model 6 4 'Structure model' pdbx_entity_src_syn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_reflns_shell.percent_possible_all' 2 3 'Structure model' '_database_2.pdbx_DOI' 3 3 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5Y7M _pdbx_database_status.recvd_initial_deposition_date 2017-08-01 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.content_type unspecified _pdbx_database_related.db_id 5XTM _pdbx_database_related.db_name PDB _pdbx_database_related.details . # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Oshima, K.' 1 ? 'Kimura, M.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Acta Crystallogr F Struct Biol Commun' _citation.journal_id_ASTM ACSFEN _citation.journal_id_CSD ? _citation.journal_id_ISSN 2053-230X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 74 _citation.language ? _citation.page_first 57 _citation.page_last 64 _citation.title 'Crystal structures of the archaeal RNase P protein Rpp38 in complex with RNA fragments containing a K-turn motif.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1107/S2053230X17018039 _citation.pdbx_database_id_PubMed 29372908 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Oshima, K.' 1 ? primary 'Gao, X.' 2 ? primary 'Hayashi, S.' 3 ? primary 'Ueda, T.' 4 ? primary 'Nakashima, T.' 5 ? primary 'Kimura, M.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man '50S ribosomal protein L7Ae' 14645.026 2 ? ? ? ? 2 polymer syn 'RNA (52-MER)' 16552.934 2 ? ? ? ? 3 non-polymer syn "GUANOSINE-5'-TRIPHOSPHATE" 523.180 2 ? ? ? ? 4 non-polymer syn 'SULFATE ION' 96.063 9 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Ribonuclease P protein component Rpp38,RNase P component Rpp38,Ribosomal protein L8e' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MMAKPSYVKFEVPKELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIY VPSKKELGAAAGIEVAAASVAIIEPGKARDLVEEIAMKVRELMKLEHHHHHH ; ;MMAKPSYVKFEVPKELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIY VPSKKELGAAAGIEVAAASVAIIEPGKARDLVEEIAMKVRELMKLEHHHHHH ; A,C ? 2 polyribonucleotide no no GUAUGGUUAACCCGCAGACGAUCGAAAGGGAUGUGGAUGAAAGCCUAAGCC GUAUGGUUAACCCGCAGACGAUCGAAAGGGAUGUGGAUGAAAGCCUAAGCC B,D ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 "GUANOSINE-5'-TRIPHOSPHATE" GTP 4 'SULFATE ION' SO4 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 MET n 1 3 ALA n 1 4 LYS n 1 5 PRO n 1 6 SER n 1 7 TYR n 1 8 VAL n 1 9 LYS n 1 10 PHE n 1 11 GLU n 1 12 VAL n 1 13 PRO n 1 14 LYS n 1 15 GLU n 1 16 LEU n 1 17 ALA n 1 18 GLU n 1 19 LYS n 1 20 ALA n 1 21 LEU n 1 22 GLN n 1 23 ALA n 1 24 VAL n 1 25 GLU n 1 26 ILE n 1 27 ALA n 1 28 ARG n 1 29 ASP n 1 30 THR n 1 31 GLY n 1 32 LYS n 1 33 ILE n 1 34 ARG n 1 35 LYS n 1 36 GLY n 1 37 THR n 1 38 ASN n 1 39 GLU n 1 40 THR n 1 41 THR n 1 42 LYS n 1 43 ALA n 1 44 VAL n 1 45 GLU n 1 46 ARG n 1 47 GLY n 1 48 GLN n 1 49 ALA n 1 50 LYS n 1 51 LEU n 1 52 VAL n 1 53 ILE n 1 54 ILE n 1 55 ALA n 1 56 GLU n 1 57 ASP n 1 58 VAL n 1 59 ASP n 1 60 PRO n 1 61 GLU n 1 62 GLU n 1 63 ILE n 1 64 VAL n 1 65 ALA n 1 66 HIS n 1 67 LEU n 1 68 PRO n 1 69 PRO n 1 70 LEU n 1 71 CYS n 1 72 GLU n 1 73 GLU n 1 74 LYS n 1 75 GLU n 1 76 ILE n 1 77 PRO n 1 78 TYR n 1 79 ILE n 1 80 TYR n 1 81 VAL n 1 82 PRO n 1 83 SER n 1 84 LYS n 1 85 LYS n 1 86 GLU n 1 87 LEU n 1 88 GLY n 1 89 ALA n 1 90 ALA n 1 91 ALA n 1 92 GLY n 1 93 ILE n 1 94 GLU n 1 95 VAL n 1 96 ALA n 1 97 ALA n 1 98 ALA n 1 99 SER n 1 100 VAL n 1 101 ALA n 1 102 ILE n 1 103 ILE n 1 104 GLU n 1 105 PRO n 1 106 GLY n 1 107 LYS n 1 108 ALA n 1 109 ARG n 1 110 ASP n 1 111 LEU n 1 112 VAL n 1 113 GLU n 1 114 GLU n 1 115 ILE n 1 116 ALA n 1 117 MET n 1 118 LYS n 1 119 VAL n 1 120 ARG n 1 121 GLU n 1 122 LEU n 1 123 MET n 1 124 LYS n 1 125 LEU n 1 126 GLU n 1 127 HIS n 1 128 HIS n 1 129 HIS n 1 130 HIS n 1 131 HIS n 1 132 HIS n 2 1 G n 2 2 U n 2 3 A n 2 4 U n 2 5 G n 2 6 G n 2 7 U n 2 8 U n 2 9 A n 2 10 A n 2 11 C n 2 12 C n 2 13 C n 2 14 G n 2 15 C n 2 16 A n 2 17 G n 2 18 A n 2 19 C n 2 20 G n 2 21 A n 2 22 U n 2 23 C n 2 24 G n 2 25 A n 2 26 A n 2 27 A n 2 28 G n 2 29 G n 2 30 G n 2 31 A n 2 32 U n 2 33 G n 2 34 U n 2 35 G n 2 36 G n 2 37 A n 2 38 U n 2 39 G n 2 40 A n 2 41 A n 2 42 A n 2 43 G n 2 44 C n 2 45 C n 2 46 U n 2 47 A n 2 48 A n 2 49 G n 2 50 C n 2 51 C n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 132 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'rpl7ae, PH1496' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 70601 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 51 _pdbx_entity_src_syn.organism_scientific 'Pyrococcus horikoshii OT3' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 70601 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GTP non-polymer n "GUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O14 P3' 523.180 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 MET 2 2 ? ? ? A . n A 1 3 ALA 3 3 ? ? ? A . n A 1 4 LYS 4 4 4 LYS LYS A . n A 1 5 PRO 5 5 5 PRO PRO A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 TYR 7 7 7 TYR TYR A . n A 1 8 VAL 8 8 8 VAL VAL A . n A 1 9 LYS 9 9 9 LYS LYS A . n A 1 10 PHE 10 10 10 PHE PHE A . n A 1 11 GLU 11 11 11 GLU GLU A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 PRO 13 13 13 PRO PRO A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 GLU 15 15 15 GLU GLU A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 GLU 18 18 18 GLU GLU A . n A 1 19 LYS 19 19 19 LYS LYS A . n A 1 20 ALA 20 20 20 ALA ALA A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 GLN 22 22 22 GLN GLN A . n A 1 23 ALA 23 23 23 ALA ALA A . n A 1 24 VAL 24 24 24 VAL VAL A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 ILE 26 26 26 ILE ILE A . n A 1 27 ALA 27 27 27 ALA ALA A . n A 1 28 ARG 28 28 28 ARG ARG A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 THR 30 30 30 THR THR A . n A 1 31 GLY 31 31 31 GLY GLY A . n A 1 32 LYS 32 32 32 LYS LYS A . n A 1 33 ILE 33 33 33 ILE ILE A . n A 1 34 ARG 34 34 34 ARG ARG A . n A 1 35 LYS 35 35 35 LYS LYS A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 THR 37 37 37 THR THR A . n A 1 38 ASN 38 38 38 ASN ASN A . n A 1 39 GLU 39 39 39 GLU GLU A . n A 1 40 THR 40 40 40 THR THR A . n A 1 41 THR 41 41 41 THR THR A . n A 1 42 LYS 42 42 42 LYS LYS A . n A 1 43 ALA 43 43 43 ALA ALA A . n A 1 44 VAL 44 44 44 VAL VAL A . n A 1 45 GLU 45 45 45 GLU GLU A . n A 1 46 ARG 46 46 46 ARG ARG A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 GLN 48 48 48 GLN GLN A . n A 1 49 ALA 49 49 49 ALA ALA A . n A 1 50 LYS 50 50 50 LYS LYS A . n A 1 51 LEU 51 51 51 LEU LEU A . n A 1 52 VAL 52 52 52 VAL VAL A . n A 1 53 ILE 53 53 53 ILE ILE A . n A 1 54 ILE 54 54 54 ILE ILE A . n A 1 55 ALA 55 55 55 ALA ALA A . n A 1 56 GLU 56 56 56 GLU GLU A . n A 1 57 ASP 57 57 57 ASP ASP A . n A 1 58 VAL 58 58 58 VAL VAL A . n A 1 59 ASP 59 59 59 ASP ASP A . n A 1 60 PRO 60 60 60 PRO PRO A . n A 1 61 GLU 61 61 61 GLU GLU A . n A 1 62 GLU 62 62 62 GLU GLU A . n A 1 63 ILE 63 63 63 ILE ILE A . n A 1 64 VAL 64 64 64 VAL VAL A . n A 1 65 ALA 65 65 65 ALA ALA A . n A 1 66 HIS 66 66 66 HIS HIS A . n A 1 67 LEU 67 67 67 LEU LEU A . n A 1 68 PRO 68 68 68 PRO PRO A . n A 1 69 PRO 69 69 69 PRO PRO A . n A 1 70 LEU 70 70 70 LEU LEU A . n A 1 71 CYS 71 71 71 CYS CYS A . n A 1 72 GLU 72 72 72 GLU GLU A . n A 1 73 GLU 73 73 73 GLU GLU A . n A 1 74 LYS 74 74 74 LYS LYS A . n A 1 75 GLU 75 75 75 GLU GLU A . n A 1 76 ILE 76 76 76 ILE ILE A . n A 1 77 PRO 77 77 77 PRO PRO A . n A 1 78 TYR 78 78 78 TYR TYR A . n A 1 79 ILE 79 79 79 ILE ILE A . n A 1 80 TYR 80 80 80 TYR TYR A . n A 1 81 VAL 81 81 81 VAL VAL A . n A 1 82 PRO 82 82 82 PRO PRO A . n A 1 83 SER 83 83 83 SER SER A . n A 1 84 LYS 84 84 84 LYS LYS A . n A 1 85 LYS 85 85 85 LYS LYS A . n A 1 86 GLU 86 86 86 GLU GLU A . n A 1 87 LEU 87 87 87 LEU LEU A . n A 1 88 GLY 88 88 88 GLY GLY A . n A 1 89 ALA 89 89 89 ALA ALA A . n A 1 90 ALA 90 90 90 ALA ALA A . n A 1 91 ALA 91 91 91 ALA ALA A . n A 1 92 GLY 92 92 92 GLY GLY A . n A 1 93 ILE 93 93 93 ILE ILE A . n A 1 94 GLU 94 94 94 GLU GLU A . n A 1 95 VAL 95 95 95 VAL VAL A . n A 1 96 ALA 96 96 96 ALA ALA A . n A 1 97 ALA 97 97 97 ALA ALA A . n A 1 98 ALA 98 98 98 ALA ALA A . n A 1 99 SER 99 99 99 SER SER A . n A 1 100 VAL 100 100 100 VAL VAL A . n A 1 101 ALA 101 101 101 ALA ALA A . n A 1 102 ILE 102 102 102 ILE ILE A . n A 1 103 ILE 103 103 103 ILE ILE A . n A 1 104 GLU 104 104 104 GLU GLU A . n A 1 105 PRO 105 105 105 PRO PRO A . n A 1 106 GLY 106 106 106 GLY GLY A . n A 1 107 LYS 107 107 107 LYS LYS A . n A 1 108 ALA 108 108 108 ALA ALA A . n A 1 109 ARG 109 109 109 ARG ARG A . n A 1 110 ASP 110 110 110 ASP ASP A . n A 1 111 LEU 111 111 111 LEU LEU A . n A 1 112 VAL 112 112 112 VAL VAL A . n A 1 113 GLU 113 113 113 GLU GLU A . n A 1 114 GLU 114 114 114 GLU GLU A . n A 1 115 ILE 115 115 115 ILE ILE A . n A 1 116 ALA 116 116 116 ALA ALA A . n A 1 117 MET 117 117 117 MET MET A . n A 1 118 LYS 118 118 118 LYS LYS A . n A 1 119 VAL 119 119 119 VAL VAL A . n A 1 120 ARG 120 120 120 ARG ARG A . n A 1 121 GLU 121 121 121 GLU GLU A . n A 1 122 LEU 122 122 122 LEU LEU A . n A 1 123 MET 123 123 123 MET MET A . n A 1 124 LYS 124 124 124 LYS LYS A . n A 1 125 LEU 125 125 125 LEU LEU A . n A 1 126 GLU 126 126 126 GLU GLU A . n A 1 127 HIS 127 127 127 HIS HIS A . n A 1 128 HIS 128 128 128 HIS HIS A . n A 1 129 HIS 129 129 ? ? ? A . n A 1 130 HIS 130 130 ? ? ? A . n A 1 131 HIS 131 131 ? ? ? A . n A 1 132 HIS 132 132 ? ? ? A . n B 2 1 G 1 2 2 G G B . n B 2 2 U 2 3 3 U U B . n B 2 3 A 3 4 4 A A B . n B 2 4 U 4 5 5 U U B . n B 2 5 G 5 6 6 G G B . n B 2 6 G 6 7 7 G G B . n B 2 7 U 7 8 8 U U B . n B 2 8 U 8 9 9 U U B . n B 2 9 A 9 10 10 A A B . n B 2 10 A 10 11 11 A A B . n B 2 11 C 11 12 12 C C B . n B 2 12 C 12 13 13 C C B . n B 2 13 C 13 14 14 C C B . n B 2 14 G 14 15 15 G G B . n B 2 15 C 15 16 16 C C B . n B 2 16 A 16 17 17 A A B . n B 2 17 G 17 18 18 G G B . n B 2 18 A 18 19 19 A A B . n B 2 19 C 19 20 20 C C B . n B 2 20 G 20 21 21 G G B . n B 2 21 A 21 22 22 A A B . n B 2 22 U 22 23 23 U U B . n B 2 23 C 23 24 24 C C B . n B 2 24 G 24 25 25 G G B . n B 2 25 A 25 26 26 A A B . n B 2 26 A 26 27 27 A A B . n B 2 27 A 27 28 28 A A B . n B 2 28 G 28 29 29 G G B . n B 2 29 G 29 30 30 G G B . n B 2 30 G 30 31 31 G G B . n B 2 31 A 31 32 32 A A B . n B 2 32 U 32 33 33 U U B . n B 2 33 G 33 34 34 G G B . n B 2 34 U 34 35 35 U U B . n B 2 35 G 35 36 36 G G B . n B 2 36 G 36 37 37 G G B . n B 2 37 A 37 38 38 A A B . n B 2 38 U 38 39 39 U U B . n B 2 39 G 39 40 40 G G B . n B 2 40 A 40 41 41 A A B . n B 2 41 A 41 42 42 A A B . n B 2 42 A 42 43 43 A A B . n B 2 43 G 43 44 44 G G B . n B 2 44 C 44 45 45 C C B . n B 2 45 C 45 46 46 C C B . n B 2 46 U 46 47 47 U U B . n B 2 47 A 47 48 48 A A B . n B 2 48 A 48 49 49 A A B . n B 2 49 G 49 50 50 G G B . n B 2 50 C 50 51 51 C C B . n B 2 51 C 51 52 52 C C B . n C 1 1 MET 1 1 ? ? ? C . n C 1 2 MET 2 2 ? ? ? C . n C 1 3 ALA 3 3 ? ? ? C . n C 1 4 LYS 4 4 4 LYS LYS C . n C 1 5 PRO 5 5 5 PRO PRO C . n C 1 6 SER 6 6 6 SER SER C . n C 1 7 TYR 7 7 7 TYR TYR C . n C 1 8 VAL 8 8 8 VAL VAL C . n C 1 9 LYS 9 9 9 LYS LYS C . n C 1 10 PHE 10 10 10 PHE PHE C . n C 1 11 GLU 11 11 11 GLU GLU C . n C 1 12 VAL 12 12 12 VAL VAL C . n C 1 13 PRO 13 13 13 PRO PRO C . n C 1 14 LYS 14 14 14 LYS LYS C . n C 1 15 GLU 15 15 15 GLU GLU C . n C 1 16 LEU 16 16 16 LEU LEU C . n C 1 17 ALA 17 17 17 ALA ALA C . n C 1 18 GLU 18 18 18 GLU GLU C . n C 1 19 LYS 19 19 19 LYS LYS C . n C 1 20 ALA 20 20 20 ALA ALA C . n C 1 21 LEU 21 21 21 LEU LEU C . n C 1 22 GLN 22 22 22 GLN GLN C . n C 1 23 ALA 23 23 23 ALA ALA C . n C 1 24 VAL 24 24 24 VAL VAL C . n C 1 25 GLU 25 25 25 GLU GLU C . n C 1 26 ILE 26 26 26 ILE ILE C . n C 1 27 ALA 27 27 27 ALA ALA C . n C 1 28 ARG 28 28 28 ARG ARG C . n C 1 29 ASP 29 29 29 ASP ASP C . n C 1 30 THR 30 30 30 THR THR C . n C 1 31 GLY 31 31 31 GLY GLY C . n C 1 32 LYS 32 32 32 LYS LYS C . n C 1 33 ILE 33 33 33 ILE ILE C . n C 1 34 ARG 34 34 34 ARG ARG C . n C 1 35 LYS 35 35 35 LYS LYS C . n C 1 36 GLY 36 36 36 GLY GLY C . n C 1 37 THR 37 37 37 THR THR C . n C 1 38 ASN 38 38 38 ASN ASN C . n C 1 39 GLU 39 39 39 GLU GLU C . n C 1 40 THR 40 40 40 THR THR C . n C 1 41 THR 41 41 41 THR THR C . n C 1 42 LYS 42 42 42 LYS LYS C . n C 1 43 ALA 43 43 43 ALA ALA C . n C 1 44 VAL 44 44 44 VAL VAL C . n C 1 45 GLU 45 45 45 GLU GLU C . n C 1 46 ARG 46 46 46 ARG ARG C . n C 1 47 GLY 47 47 47 GLY GLY C . n C 1 48 GLN 48 48 48 GLN GLN C . n C 1 49 ALA 49 49 49 ALA ALA C . n C 1 50 LYS 50 50 50 LYS LYS C . n C 1 51 LEU 51 51 51 LEU LEU C . n C 1 52 VAL 52 52 52 VAL VAL C . n C 1 53 ILE 53 53 53 ILE ILE C . n C 1 54 ILE 54 54 54 ILE ILE C . n C 1 55 ALA 55 55 55 ALA ALA C . n C 1 56 GLU 56 56 56 GLU GLU C . n C 1 57 ASP 57 57 57 ASP ASP C . n C 1 58 VAL 58 58 58 VAL VAL C . n C 1 59 ASP 59 59 59 ASP ASP C . n C 1 60 PRO 60 60 60 PRO PRO C . n C 1 61 GLU 61 61 61 GLU GLU C . n C 1 62 GLU 62 62 62 GLU GLU C . n C 1 63 ILE 63 63 63 ILE ILE C . n C 1 64 VAL 64 64 64 VAL VAL C . n C 1 65 ALA 65 65 65 ALA ALA C . n C 1 66 HIS 66 66 66 HIS HIS C . n C 1 67 LEU 67 67 67 LEU LEU C . n C 1 68 PRO 68 68 68 PRO PRO C . n C 1 69 PRO 69 69 69 PRO PRO C . n C 1 70 LEU 70 70 70 LEU LEU C . n C 1 71 CYS 71 71 71 CYS CYS C . n C 1 72 GLU 72 72 72 GLU GLU C . n C 1 73 GLU 73 73 73 GLU GLU C . n C 1 74 LYS 74 74 74 LYS LYS C . n C 1 75 GLU 75 75 75 GLU GLU C . n C 1 76 ILE 76 76 76 ILE ILE C . n C 1 77 PRO 77 77 77 PRO PRO C . n C 1 78 TYR 78 78 78 TYR TYR C . n C 1 79 ILE 79 79 79 ILE ILE C . n C 1 80 TYR 80 80 80 TYR TYR C . n C 1 81 VAL 81 81 81 VAL VAL C . n C 1 82 PRO 82 82 82 PRO PRO C . n C 1 83 SER 83 83 83 SER SER C . n C 1 84 LYS 84 84 84 LYS LYS C . n C 1 85 LYS 85 85 85 LYS LYS C . n C 1 86 GLU 86 86 86 GLU GLU C . n C 1 87 LEU 87 87 87 LEU LEU C . n C 1 88 GLY 88 88 88 GLY GLY C . n C 1 89 ALA 89 89 89 ALA ALA C . n C 1 90 ALA 90 90 90 ALA ALA C . n C 1 91 ALA 91 91 91 ALA ALA C . n C 1 92 GLY 92 92 92 GLY GLY C . n C 1 93 ILE 93 93 93 ILE ILE C . n C 1 94 GLU 94 94 94 GLU GLU C . n C 1 95 VAL 95 95 95 VAL VAL C . n C 1 96 ALA 96 96 96 ALA ALA C . n C 1 97 ALA 97 97 97 ALA ALA C . n C 1 98 ALA 98 98 98 ALA ALA C . n C 1 99 SER 99 99 99 SER SER C . n C 1 100 VAL 100 100 100 VAL VAL C . n C 1 101 ALA 101 101 101 ALA ALA C . n C 1 102 ILE 102 102 102 ILE ILE C . n C 1 103 ILE 103 103 103 ILE ILE C . n C 1 104 GLU 104 104 104 GLU GLU C . n C 1 105 PRO 105 105 105 PRO PRO C . n C 1 106 GLY 106 106 106 GLY GLY C . n C 1 107 LYS 107 107 107 LYS LYS C . n C 1 108 ALA 108 108 108 ALA ALA C . n C 1 109 ARG 109 109 109 ARG ARG C . n C 1 110 ASP 110 110 110 ASP ASP C . n C 1 111 LEU 111 111 111 LEU LEU C . n C 1 112 VAL 112 112 112 VAL VAL C . n C 1 113 GLU 113 113 113 GLU GLU C . n C 1 114 GLU 114 114 114 GLU GLU C . n C 1 115 ILE 115 115 115 ILE ILE C . n C 1 116 ALA 116 116 116 ALA ALA C . n C 1 117 MET 117 117 117 MET MET C . n C 1 118 LYS 118 118 118 LYS LYS C . n C 1 119 VAL 119 119 119 VAL VAL C . n C 1 120 ARG 120 120 120 ARG ARG C . n C 1 121 GLU 121 121 121 GLU GLU C . n C 1 122 LEU 122 122 122 LEU LEU C . n C 1 123 MET 123 123 123 MET MET C . n C 1 124 LYS 124 124 124 LYS LYS C . n C 1 125 LEU 125 125 125 LEU LEU C . n C 1 126 GLU 126 126 126 GLU GLU C . n C 1 127 HIS 127 127 127 HIS HIS C . n C 1 128 HIS 128 128 128 HIS HIS C . n C 1 129 HIS 129 129 ? ? ? C . n C 1 130 HIS 130 130 ? ? ? C . n C 1 131 HIS 131 131 ? ? ? C . n C 1 132 HIS 132 132 ? ? ? C . n D 2 1 G 1 2 2 G G D . n D 2 2 U 2 3 3 U U D . n D 2 3 A 3 4 4 A A D . n D 2 4 U 4 5 5 U U D . n D 2 5 G 5 6 6 G G D . n D 2 6 G 6 7 7 G G D . n D 2 7 U 7 8 8 U U D . n D 2 8 U 8 9 9 U U D . n D 2 9 A 9 10 10 A A D . n D 2 10 A 10 11 11 A A D . n D 2 11 C 11 12 12 C C D . n D 2 12 C 12 13 13 C C D . n D 2 13 C 13 14 14 C C D . n D 2 14 G 14 15 15 G G D . n D 2 15 C 15 16 16 C C D . n D 2 16 A 16 17 17 A A D . n D 2 17 G 17 18 18 G G D . n D 2 18 A 18 19 19 A A D . n D 2 19 C 19 20 20 C C D . n D 2 20 G 20 21 21 G G D . n D 2 21 A 21 22 22 A A D . n D 2 22 U 22 23 23 U U D . n D 2 23 C 23 24 24 C C D . n D 2 24 G 24 25 25 G G D . n D 2 25 A 25 26 26 A A D . n D 2 26 A 26 27 27 A A D . n D 2 27 A 27 28 28 A A D . n D 2 28 G 28 29 29 G G D . n D 2 29 G 29 30 30 G G D . n D 2 30 G 30 31 31 G G D . n D 2 31 A 31 32 32 A A D . n D 2 32 U 32 33 33 U U D . n D 2 33 G 33 34 34 G G D . n D 2 34 U 34 35 35 U U D . n D 2 35 G 35 36 36 G G D . n D 2 36 G 36 37 37 G G D . n D 2 37 A 37 38 38 A A D . n D 2 38 U 38 39 39 U U D . n D 2 39 G 39 40 40 G G D . n D 2 40 A 40 41 41 A A D . n D 2 41 A 41 42 42 A A D . n D 2 42 A 42 43 43 A A D . n D 2 43 G 43 44 44 G G D . n D 2 44 C 44 45 45 C C D . n D 2 45 C 45 46 46 C C D . n D 2 46 U 46 47 47 U U D . n D 2 47 A 47 48 48 A A D . n D 2 48 A 48 49 49 A A D . n D 2 49 G 49 50 50 G G D . n D 2 50 C 50 51 51 C C D . n D 2 51 C 51 52 52 C C D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GTP 1 101 1 GTP GTP B . F 4 SO4 1 102 2 SO4 SO4 B . G 4 SO4 1 103 6 SO4 SO4 B . H 4 SO4 1 104 7 SO4 SO4 B . I 4 SO4 1 201 1 SO4 SO4 C . J 4 SO4 1 202 4 SO4 SO4 C . K 4 SO4 1 203 8 SO4 SO4 C . L 3 GTP 1 101 1 GTP GTP D . M 4 SO4 1 102 3 SO4 SO4 D . N 4 SO4 1 103 5 SO4 SO4 D . O 4 SO4 1 104 9 SO4 SO4 D . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.10.1_2155 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 2 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 3 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.22 4 # _cell.length_a 113.370 _cell.length_b 176.600 _cell.length_c 59.900 _cell.angle_alpha 90.000 _cell.angle_beta 105.120 _cell.angle_gamma 90.000 _cell.entry_id 5Y7M _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.entry_id 5Y7M _symmetry.Int_Tables_number 5 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5Y7M _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 4.56 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 73.05 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;sodium cacodylate ammonium solfate magnesium acetate ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RAYONIX MX-225' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-07-03 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SPRING-8 BEAMLINE BL26B1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL26B1 _diffrn_source.pdbx_synchrotron_site SPring-8 # _reflns.entry_id 5Y7M _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 48.376 _reflns.d_resolution_high 3.100 _reflns.number_obs 20596 _reflns.number_all ? _reflns.percent_possible_obs 99.700 _reflns.pdbx_Rmerge_I_obs 0.197 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 7.050 _reflns.B_iso_Wilson_estimate 57.250 _reflns.pdbx_redundancy 3.801 _reflns.pdbx_Rrim_I_all 0.229 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_CC_half 0.988 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_number_measured_all 78285 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_chi_squared 0.939 _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.details ? _reflns.pdbx_CC_star ? # loop_ _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.pdbx_rejects _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.meanI_over_sigI_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star 1 1 3.100 3.290 12613 ? 3303 ? 0.744 1.960 ? ? 3.819 ? ? 3320 ? ? ? ? ? 99.500 0.867 ? 0.928 ? 1 2 3.290 3.510 11889 ? 3118 ? 0.462 3.120 ? ? 3.813 ? ? 3129 ? ? ? ? ? 99.600 0.539 ? 0.956 ? 1 3 3.510 3.790 10959 ? 2883 ? 0.318 4.340 ? ? 3.801 ? ? 2888 ? ? ? ? ? 99.800 0.371 ? 0.972 ? 1 4 3.790 4.150 10148 ? 2664 ? 0.231 6.050 ? ? 3.809 ? ? 2670 ? ? ? ? ? 99.800 0.269 ? 0.972 ? 1 5 4.150 4.640 9356 ? 2435 ? 0.166 8.100 ? ? 3.842 ? ? 2443 ? ? ? ? ? 99.700 0.193 ? 0.977 ? 1 6 4.640 5.350 8160 ? 2137 ? 0.148 8.920 ? ? 3.818 ? ? 2141 ? ? ? ? ? 99.800 0.173 ? 0.977 ? 1 7 5.350 6.530 6896 ? 1819 ? 0.124 10.370 ? ? 3.791 ? ? 1818 ? ? ? ? ? 100 0.145 ? 0.982 ? 1 8 6.530 9.150 5314 ? 1417 ? 0.070 15.800 ? ? 3.750 ? ? 1423 ? ? ? ? ? 99.600 0.082 ? 0.994 ? 1 9 9.150 48.376 2950 ? 820 ? 0.041 24.890 ? ? 3.598 ? ? 835 ? ? ? ? ? 98.200 0.048 ? 0.998 ? # _refine.entry_id 5Y7M _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 3.1000 _refine.ls_d_res_low 48.3760 _refine.pdbx_ls_sigma_F 1.360 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.0300 _refine.ls_number_reflns_obs 20436 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details ? _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2261 _refine.ls_R_factor_R_work 0.2249 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2472 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.0000 _refine.ls_number_reflns_R_free 1021 _refine.ls_number_reflns_R_work 19415 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 72.6709 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.4700 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 2czw _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 223.770 _refine.B_iso_min 36.690 _refine.pdbx_overall_phase_error 29.8700 _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_R_factor_R_free_error_details ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 3.1000 _refine_hist.d_res_low 48.3760 _refine_hist.pdbx_number_atoms_ligand 45 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 4237 _refine_hist.pdbx_number_residues_total 354 _refine_hist.pdbx_B_iso_mean_ligand 127.21 _refine_hist.pdbx_number_atoms_protein 1928 _refine_hist.pdbx_number_atoms_nucleic_acid 2264 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' f_bond_d 4528 0.001 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 6652 0.465 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 828 0.031 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 444 0.004 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 2492 17.449 ? ? ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.pdbx_refine_id _refine_ls_shell.R_factor_obs 3.0997 3.2631 7 98.0000 2711 . 0.3704 0.4429 . 142 0.0000 2853 . 'X-RAY DIFFRACTION' . 3.2631 3.4675 7 97.0000 2737 . 0.3164 0.3358 . 143 0.0000 2880 . 'X-RAY DIFFRACTION' . 3.4675 3.7352 7 99.0000 2774 . 0.2870 0.3067 . 146 0.0000 2920 . 'X-RAY DIFFRACTION' . 3.7352 4.1109 7 100.0000 2758 . 0.2334 0.2340 . 145 0.0000 2903 . 'X-RAY DIFFRACTION' . 4.1109 4.7053 7 100.0000 2802 . 0.1956 0.2383 . 148 0.0000 2950 . 'X-RAY DIFFRACTION' . 4.7053 5.9265 7 100.0000 2815 . 0.1839 0.1962 . 148 0.0000 2963 . 'X-RAY DIFFRACTION' . 5.9265 48.3817 7 100.0000 2818 . 0.1708 0.1881 . 149 0.0000 2967 . 'X-RAY DIFFRACTION' . # _struct.entry_id 5Y7M _struct.title 'Crystal structure of PhoRpp38 bound to a K-turn in P12.1 helix' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5Y7M _struct_keywords.text 'RNA binding protein, Kink-turn RNA, Ribonuclease P' _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 4 ? K N N 4 ? L N N 3 ? M N N 4 ? N N N 4 ? O N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP RL7A_PYRHO P62009 ? 1 ;MAKPSYVKFEVPKELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYV PSKKELGAAAGIEVAAASVAIIEPGKARDLVEEIAMKVRELMK ; 1 2 PDB 5Y7M 5Y7M ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5Y7M A 2 ? 124 ? P62009 1 ? 123 ? 2 124 2 2 5Y7M B 1 ? 51 ? 5Y7M 2 ? 52 ? 2 52 3 1 5Y7M C 2 ? 124 ? P62009 1 ? 123 ? 2 124 4 2 5Y7M D 1 ? 51 ? 5Y7M 2 ? 52 ? 2 52 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5Y7M MET A 1 ? UNP P62009 ? ? 'initiating methionine' 1 1 1 5Y7M LEU A 125 ? UNP P62009 ? ? 'expression tag' 125 2 1 5Y7M GLU A 126 ? UNP P62009 ? ? 'expression tag' 126 3 1 5Y7M HIS A 127 ? UNP P62009 ? ? 'expression tag' 127 4 1 5Y7M HIS A 128 ? UNP P62009 ? ? 'expression tag' 128 5 1 5Y7M HIS A 129 ? UNP P62009 ? ? 'expression tag' 129 6 1 5Y7M HIS A 130 ? UNP P62009 ? ? 'expression tag' 130 7 1 5Y7M HIS A 131 ? UNP P62009 ? ? 'expression tag' 131 8 1 5Y7M HIS A 132 ? UNP P62009 ? ? 'expression tag' 132 9 3 5Y7M MET C 1 ? UNP P62009 ? ? 'initiating methionine' 1 10 3 5Y7M LEU C 125 ? UNP P62009 ? ? 'expression tag' 125 11 3 5Y7M GLU C 126 ? UNP P62009 ? ? 'expression tag' 126 12 3 5Y7M HIS C 127 ? UNP P62009 ? ? 'expression tag' 127 13 3 5Y7M HIS C 128 ? UNP P62009 ? ? 'expression tag' 128 14 3 5Y7M HIS C 129 ? UNP P62009 ? ? 'expression tag' 129 15 3 5Y7M HIS C 130 ? UNP P62009 ? ? 'expression tag' 130 16 3 5Y7M HIS C 131 ? UNP P62009 ? ? 'expression tag' 131 17 3 5Y7M HIS C 132 ? UNP P62009 ? ? 'expression tag' 132 18 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2200 ? 1 MORE -51 ? 1 'SSA (A^2)' 15050 ? 2 'ABSA (A^2)' 2310 ? 2 MORE -56 ? 2 'SSA (A^2)' 15230 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F,G,H 2 1 C,D,I,J,K,L,M,N,O # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 PRO A 13 ? GLY A 31 ? PRO A 13 GLY A 31 1 ? 19 HELX_P HELX_P2 AA2 GLY A 36 ? ARG A 46 ? GLY A 36 ARG A 46 1 ? 11 HELX_P HELX_P3 AA3 PRO A 60 ? VAL A 64 ? PRO A 60 VAL A 64 5 ? 5 HELX_P HELX_P4 AA4 HIS A 66 ? LYS A 74 ? HIS A 66 LYS A 74 1 ? 9 HELX_P HELX_P5 AA5 LYS A 84 ? GLY A 92 ? LYS A 84 GLY A 92 1 ? 9 HELX_P HELX_P6 AA6 PRO A 105 ? LYS A 107 ? PRO A 105 LYS A 107 5 ? 3 HELX_P HELX_P7 AA7 ALA A 108 ? HIS A 127 ? ALA A 108 HIS A 127 1 ? 20 HELX_P HELX_P8 AA8 PRO C 13 ? GLY C 31 ? PRO C 13 GLY C 31 1 ? 19 HELX_P HELX_P9 AA9 GLY C 36 ? ARG C 46 ? GLY C 36 ARG C 46 1 ? 11 HELX_P HELX_P10 AB1 PRO C 60 ? VAL C 64 ? PRO C 60 VAL C 64 5 ? 5 HELX_P HELX_P11 AB2 HIS C 66 ? LYS C 74 ? HIS C 66 LYS C 74 1 ? 9 HELX_P HELX_P12 AB3 SER C 83 ? GLY C 92 ? SER C 83 GLY C 92 1 ? 10 HELX_P HELX_P13 AB4 PRO C 105 ? LYS C 107 ? PRO C 105 LYS C 107 5 ? 3 HELX_P HELX_P14 AB5 ALA C 108 ? GLU C 126 ? ALA C 108 GLU C 126 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B G 1 P ? ? ? 1_555 E GTP . "O3'" ? ? B G 2 B GTP 101 1_555 ? ? ? ? ? ? ? 1.602 ? ? covale2 covale both ? D G 1 P ? ? ? 1_555 L GTP . "O3'" ? ? D G 2 D GTP 101 1_555 ? ? ? ? ? ? ? 1.605 ? ? hydrog1 hydrog ? ? B G 1 N1 ? ? ? 1_555 B C 50 N3 ? ? B G 2 B C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B G 1 N2 ? ? ? 1_555 B C 50 O2 ? ? B G 2 B C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B G 1 O6 ? ? ? 1_555 B C 50 N4 ? ? B G 2 B C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B U 2 N3 ? ? ? 1_555 B G 49 O6 ? ? B U 3 B G 50 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog5 hydrog ? ? B U 2 O2 ? ? ? 1_555 B G 49 N1 ? ? B U 3 B G 50 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog6 hydrog ? ? B A 3 N6 ? ? ? 1_555 B U 46 O2 ? ? B A 4 B U 47 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog7 hydrog ? ? B A 3 N7 ? ? ? 1_555 B U 46 N3 ? ? B A 4 B U 47 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog8 hydrog ? ? B G 5 N1 ? ? ? 1_555 B C 45 N3 ? ? B G 6 B C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B G 5 N2 ? ? ? 1_555 B C 45 O2 ? ? B G 6 B C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B G 5 O6 ? ? ? 1_555 B C 45 N4 ? ? B G 6 B C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B G 6 N1 ? ? ? 1_555 B C 44 N3 ? ? B G 7 B C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B G 6 N2 ? ? ? 1_555 B C 44 O2 ? ? B G 7 B C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B G 6 O6 ? ? ? 1_555 B C 44 N4 ? ? B G 7 B C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B U 7 N3 ? ? ? 1_555 B G 43 O6 ? ? B U 8 B G 44 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog15 hydrog ? ? B U 7 O2 ? ? ? 1_555 B G 43 N1 ? ? B U 8 B G 44 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog16 hydrog ? ? B U 8 O4 ? ? ? 1_555 B A 42 N6 ? ? B U 9 B A 43 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog17 hydrog ? ? B A 10 N1 ? ? ? 1_555 B U 38 N3 ? ? B A 11 B U 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B A 10 N6 ? ? ? 1_555 B U 38 O4 ? ? B A 11 B U 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B C 11 N3 ? ? ? 1_555 B A 37 N6 ? ? B C 12 B A 38 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog20 hydrog ? ? B C 12 N3 ? ? ? 1_555 B G 36 N1 ? ? B C 13 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B C 12 N4 ? ? ? 1_555 B G 36 O6 ? ? B C 13 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B C 12 O2 ? ? ? 1_555 B G 36 N2 ? ? B C 13 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B C 13 N3 ? ? ? 1_555 B G 35 N1 ? ? B C 14 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B C 13 N4 ? ? ? 1_555 B G 35 O6 ? ? B C 14 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B C 13 O2 ? ? ? 1_555 B G 35 N2 ? ? B C 14 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B G 14 N1 ? ? ? 1_555 B U 34 O2 ? ? B G 15 B U 35 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog27 hydrog ? ? B G 14 O6 ? ? ? 1_555 B U 34 N3 ? ? B G 15 B U 35 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog28 hydrog ? ? B C 15 N3 ? ? ? 1_555 B G 33 N1 ? ? B C 16 B G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B C 15 N4 ? ? ? 1_555 B G 33 O6 ? ? B C 16 B G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B C 15 O2 ? ? ? 1_555 B G 33 N2 ? ? B C 16 B G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B A 16 N1 ? ? ? 1_555 B U 32 N3 ? ? B A 17 B U 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B A 16 N6 ? ? ? 1_555 B U 32 O4 ? ? B A 17 B U 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? B G 17 N2 ? ? ? 1_555 B A 31 N3 ? ? B G 18 B A 32 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog34 hydrog ? ? B G 20 N2 ? ? ? 1_555 B A 31 N7 ? ? B G 21 B A 32 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog35 hydrog ? ? B G 20 N3 ? ? ? 1_555 B A 31 N6 ? ? B G 21 B A 32 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog36 hydrog ? ? B A 21 N6 ? ? ? 1_555 B G 30 N3 ? ? B A 22 B G 31 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog37 hydrog ? ? B A 21 N7 ? ? ? 1_555 B G 30 N2 ? ? B A 22 B G 31 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog38 hydrog ? ? B U 22 O4 ? ? ? 1_555 B G 29 N2 ? ? B U 23 B G 30 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog39 hydrog ? ? B C 23 N3 ? ? ? 1_555 B G 28 N1 ? ? B C 24 B G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? B C 23 N4 ? ? ? 1_555 B G 28 O6 ? ? B C 24 B G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? B C 23 O2 ? ? ? 1_555 B G 28 N2 ? ? B C 24 B G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? B G 24 N2 ? ? ? 1_555 B A 27 N7 ? ? B G 25 B A 28 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog43 hydrog ? ? D G 1 N1 ? ? ? 1_555 D C 50 N3 ? ? D G 2 D C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? D G 1 N2 ? ? ? 1_555 D C 50 O2 ? ? D G 2 D C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? D G 1 O6 ? ? ? 1_555 D C 50 N4 ? ? D G 2 D C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? D U 2 N3 ? ? ? 1_555 D G 49 O6 ? ? D U 3 D G 50 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog47 hydrog ? ? D U 2 O2 ? ? ? 1_555 D G 49 N1 ? ? D U 3 D G 50 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog48 hydrog ? ? D A 3 N6 ? ? ? 1_555 D U 46 O2 ? ? D A 4 D U 47 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog49 hydrog ? ? D A 3 N7 ? ? ? 1_555 D U 46 N3 ? ? D A 4 D U 47 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog50 hydrog ? ? D G 5 N1 ? ? ? 1_555 D C 45 N3 ? ? D G 6 D C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? D G 5 N2 ? ? ? 1_555 D C 45 O2 ? ? D G 6 D C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? D G 5 O6 ? ? ? 1_555 D C 45 N4 ? ? D G 6 D C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? D G 6 N1 ? ? ? 1_555 D C 44 N3 ? ? D G 7 D C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? D G 6 N2 ? ? ? 1_555 D C 44 O2 ? ? D G 7 D C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? D G 6 O6 ? ? ? 1_555 D C 44 N4 ? ? D G 7 D C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? D U 7 N3 ? ? ? 1_555 D G 43 O6 ? ? D U 8 D G 44 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog57 hydrog ? ? D U 7 O2 ? ? ? 1_555 D G 43 N1 ? ? D U 8 D G 44 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog58 hydrog ? ? D U 8 O4 ? ? ? 1_555 D A 42 N6 ? ? D U 9 D A 43 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog59 hydrog ? ? D A 10 N1 ? ? ? 1_555 D U 38 N3 ? ? D A 11 D U 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? D A 10 N6 ? ? ? 1_555 D U 38 O4 ? ? D A 11 D U 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? D C 11 N3 ? ? ? 1_555 D A 37 N6 ? ? D C 12 D A 38 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog62 hydrog ? ? D C 12 N3 ? ? ? 1_555 D G 36 N1 ? ? D C 13 D G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? D C 12 N4 ? ? ? 1_555 D G 36 O6 ? ? D C 13 D G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? D C 12 O2 ? ? ? 1_555 D G 36 N2 ? ? D C 13 D G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? D C 13 N3 ? ? ? 1_555 D G 35 N1 ? ? D C 14 D G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? D C 13 N4 ? ? ? 1_555 D G 35 O6 ? ? D C 14 D G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? D C 13 O2 ? ? ? 1_555 D G 35 N2 ? ? D C 14 D G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? D G 14 N1 ? ? ? 1_555 D U 34 O2 ? ? D G 15 D U 35 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog69 hydrog ? ? D G 14 O6 ? ? ? 1_555 D U 34 N3 ? ? D G 15 D U 35 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog70 hydrog ? ? D C 15 N3 ? ? ? 1_555 D G 33 N1 ? ? D C 16 D G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? D C 15 N4 ? ? ? 1_555 D G 33 O6 ? ? D C 16 D G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? D C 15 O2 ? ? ? 1_555 D G 33 N2 ? ? D C 16 D G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? D A 16 N1 ? ? ? 1_555 D U 32 N3 ? ? D A 17 D U 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? D A 16 N6 ? ? ? 1_555 D U 32 O4 ? ? D A 17 D U 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? D G 17 N2 ? ? ? 1_555 D A 31 N3 ? ? D G 18 D A 32 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog76 hydrog ? ? D G 20 N2 ? ? ? 1_555 D A 31 N7 ? ? D G 21 D A 32 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog77 hydrog ? ? D G 20 N3 ? ? ? 1_555 D A 31 N6 ? ? D G 21 D A 32 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog78 hydrog ? ? D A 21 N6 ? ? ? 1_555 D G 30 N3 ? ? D A 22 D G 31 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog79 hydrog ? ? D A 21 N7 ? ? ? 1_555 D G 30 N2 ? ? D A 22 D G 31 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog80 hydrog ? ? D U 22 O4 ? ? ? 1_555 D G 29 N2 ? ? D U 23 D G 30 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog81 hydrog ? ? D C 23 N3 ? ? ? 1_555 D G 28 N1 ? ? D C 24 D G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? D C 23 N4 ? ? ? 1_555 D G 28 O6 ? ? D C 24 D G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? D C 23 O2 ? ? ? 1_555 D G 28 N2 ? ? D C 24 D G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? D G 24 N2 ? ? ? 1_555 D A 27 N7 ? ? D G 25 D A 28 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ASP 59 A . ? ASP 59 A PRO 60 A ? PRO 60 A 1 4.24 2 ASP 59 C . ? ASP 59 C PRO 60 C ? PRO 60 C 1 3.78 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LYS A 32 ? LYS A 35 ? LYS A 32 LYS A 35 AA1 2 SER A 99 ? GLU A 104 ? SER A 99 GLU A 104 AA1 3 LEU A 51 ? ALA A 55 ? LEU A 51 ALA A 55 AA1 4 TYR A 78 ? VAL A 81 ? TYR A 78 VAL A 81 AA2 1 LYS C 32 ? LYS C 35 ? LYS C 32 LYS C 35 AA2 2 SER C 99 ? GLU C 104 ? SER C 99 GLU C 104 AA2 3 LEU C 51 ? ALA C 55 ? LEU C 51 ALA C 55 AA2 4 TYR C 78 ? VAL C 81 ? TYR C 78 VAL C 81 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ARG A 34 ? N ARG A 34 O ALA A 101 ? O ALA A 101 AA1 2 3 O ILE A 102 ? O ILE A 102 N LEU A 51 ? N LEU A 51 AA1 3 4 N ILE A 54 ? N ILE A 54 O VAL A 81 ? O VAL A 81 AA2 1 2 N ARG C 34 ? N ARG C 34 O ALA C 101 ? O ALA C 101 AA2 2 3 O VAL C 100 ? O VAL C 100 N ILE C 53 ? N ILE C 53 AA2 3 4 N ILE C 54 ? N ILE C 54 O VAL C 81 ? O VAL C 81 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B GTP 101 ? 4 'binding site for residue GTP B 101' AC2 Software B SO4 102 ? 4 'binding site for residue SO4 B 102' AC3 Software B SO4 103 ? 3 'binding site for residue SO4 B 103' AC4 Software B SO4 104 ? 3 'binding site for residue SO4 B 104' AC5 Software C SO4 201 ? 1 'binding site for residue SO4 C 201' AC6 Software C SO4 202 ? 3 'binding site for residue SO4 C 202' AC7 Software C SO4 203 ? 3 'binding site for residue SO4 C 203' AC8 Software D SO4 102 ? 3 'binding site for residue SO4 D 102' AC9 Software D SO4 103 ? 1 'binding site for residue SO4 D 103' AD1 Software D SO4 104 ? 3 'binding site for residue SO4 D 104' AD2 Software D GTP 101 ? 6 'binding site for Di-nucleotide GTP D 101 and G D 2' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 G B 1 ? G B 2 . ? 1_555 ? 2 AC1 4 C B 51 ? C B 52 . ? 1_555 ? 3 AC1 4 C D 51 ? C D 52 . ? 3_445 ? 4 AC1 4 GTP L . ? GTP D 101 . ? 3_445 ? 5 AC2 4 C B 15 ? C B 16 . ? 1_555 ? 6 AC2 4 A B 16 ? A B 17 . ? 1_555 ? 7 AC2 4 G B 17 ? G B 18 . ? 1_555 ? 8 AC2 4 U B 32 ? U B 33 . ? 1_555 ? 9 AC3 3 A B 9 ? A B 10 . ? 1_555 ? 10 AC3 3 A B 40 ? A B 41 . ? 1_555 ? 11 AC3 3 SO4 H . ? SO4 B 104 . ? 1_555 ? 12 AC4 3 A B 10 ? A B 11 . ? 1_555 ? 13 AC4 3 C B 11 ? C B 12 . ? 1_555 ? 14 AC4 3 SO4 G . ? SO4 B 103 . ? 1_555 ? 15 AC5 1 ARG C 46 ? ARG C 46 . ? 1_555 ? 16 AC6 3 U B 7 ? U B 8 . ? 1_555 ? 17 AC6 3 G B 43 ? G B 44 . ? 1_555 ? 18 AC6 3 ARG C 109 ? ARG C 109 . ? 1_555 ? 19 AC7 3 LYS C 32 ? LYS C 32 . ? 1_555 ? 20 AC7 3 ILE C 33 ? ILE C 33 . ? 1_555 ? 21 AC7 3 ARG C 34 ? ARG C 34 . ? 1_555 ? 22 AC8 3 C D 15 ? C D 16 . ? 1_555 ? 23 AC8 3 A D 16 ? A D 17 . ? 1_555 ? 24 AC8 3 G D 17 ? G D 18 . ? 1_555 ? 25 AC9 1 A D 40 ? A D 41 . ? 1_555 ? 26 AD1 3 U D 8 ? U D 9 . ? 1_555 ? 27 AD1 3 A D 9 ? A D 10 . ? 1_555 ? 28 AD1 3 A D 40 ? A D 41 . ? 1_555 ? 29 AD2 6 C B 51 ? C B 52 . ? 3_555 ? 30 AD2 6 GTP E . ? GTP B 101 . ? 3_555 ? 31 AD2 6 U D 2 ? U D 3 . ? 1_555 ? 32 AD2 6 G D 49 ? G D 50 . ? 1_555 ? 33 AD2 6 C D 50 ? C D 51 . ? 1_555 ? 34 AD2 6 C D 51 ? C D 52 . ? 1_555 ? # _phasing.method MR # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A MET 2 ? A MET 2 3 1 Y 1 A ALA 3 ? A ALA 3 4 1 Y 1 A HIS 129 ? A HIS 129 5 1 Y 1 A HIS 130 ? A HIS 130 6 1 Y 1 A HIS 131 ? A HIS 131 7 1 Y 1 A HIS 132 ? A HIS 132 8 1 Y 1 C MET 1 ? C MET 1 9 1 Y 1 C MET 2 ? C MET 2 10 1 Y 1 C ALA 3 ? C ALA 3 11 1 Y 1 C HIS 129 ? C HIS 129 12 1 Y 1 C HIS 130 ? C HIS 130 13 1 Y 1 C HIS 131 ? C HIS 131 14 1 Y 1 C HIS 132 ? C HIS 132 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 C OP3 O N N 111 C P P N N 112 C OP1 O N N 113 C OP2 O N N 114 C "O5'" O N N 115 C "C5'" C N N 116 C "C4'" C N R 117 C "O4'" O N N 118 C "C3'" C N S 119 C "O3'" O N N 120 C "C2'" C N R 121 C "O2'" O N N 122 C "C1'" C N R 123 C N1 N N N 124 C C2 C N N 125 C O2 O N N 126 C N3 N N N 127 C C4 C N N 128 C N4 N N N 129 C C5 C N N 130 C C6 C N N 131 C HOP3 H N N 132 C HOP2 H N N 133 C "H5'" H N N 134 C "H5''" H N N 135 C "H4'" H N N 136 C "H3'" H N N 137 C "HO3'" H N N 138 C "H2'" H N N 139 C "HO2'" H N N 140 C "H1'" H N N 141 C H41 H N N 142 C H42 H N N 143 C H5 H N N 144 C H6 H N N 145 CYS N N N N 146 CYS CA C N R 147 CYS C C N N 148 CYS O O N N 149 CYS CB C N N 150 CYS SG S N N 151 CYS OXT O N N 152 CYS H H N N 153 CYS H2 H N N 154 CYS HA H N N 155 CYS HB2 H N N 156 CYS HB3 H N N 157 CYS HG H N N 158 CYS HXT H N N 159 G OP3 O N N 160 G P P N N 161 G OP1 O N N 162 G OP2 O N N 163 G "O5'" O N N 164 G "C5'" C N N 165 G "C4'" C N R 166 G "O4'" O N N 167 G "C3'" C N S 168 G "O3'" O N N 169 G "C2'" C N R 170 G "O2'" O N N 171 G "C1'" C N R 172 G N9 N Y N 173 G C8 C Y N 174 G N7 N Y N 175 G C5 C Y N 176 G C6 C N N 177 G O6 O N N 178 G N1 N N N 179 G C2 C N N 180 G N2 N N N 181 G N3 N N N 182 G C4 C Y N 183 G HOP3 H N N 184 G HOP2 H N N 185 G "H5'" H N N 186 G "H5''" H N N 187 G "H4'" H N N 188 G "H3'" H N N 189 G "HO3'" H N N 190 G "H2'" H N N 191 G "HO2'" H N N 192 G "H1'" H N N 193 G H8 H N N 194 G H1 H N N 195 G H21 H N N 196 G H22 H N N 197 GLN N N N N 198 GLN CA C N S 199 GLN C C N N 200 GLN O O N N 201 GLN CB C N N 202 GLN CG C N N 203 GLN CD C N N 204 GLN OE1 O N N 205 GLN NE2 N N N 206 GLN OXT O N N 207 GLN H H N N 208 GLN H2 H N N 209 GLN HA H N N 210 GLN HB2 H N N 211 GLN HB3 H N N 212 GLN HG2 H N N 213 GLN HG3 H N N 214 GLN HE21 H N N 215 GLN HE22 H N N 216 GLN HXT H N N 217 GLU N N N N 218 GLU CA C N S 219 GLU C C N N 220 GLU O O N N 221 GLU CB C N N 222 GLU CG C N N 223 GLU CD C N N 224 GLU OE1 O N N 225 GLU OE2 O N N 226 GLU OXT O N N 227 GLU H H N N 228 GLU H2 H N N 229 GLU HA H N N 230 GLU HB2 H N N 231 GLU HB3 H N N 232 GLU HG2 H N N 233 GLU HG3 H N N 234 GLU HE2 H N N 235 GLU HXT H N N 236 GLY N N N N 237 GLY CA C N N 238 GLY C C N N 239 GLY O O N N 240 GLY OXT O N N 241 GLY H H N N 242 GLY H2 H N N 243 GLY HA2 H N N 244 GLY HA3 H N N 245 GLY HXT H N N 246 GTP PG P N N 247 GTP O1G O N N 248 GTP O2G O N N 249 GTP O3G O N N 250 GTP O3B O N N 251 GTP PB P N N 252 GTP O1B O N N 253 GTP O2B O N N 254 GTP O3A O N N 255 GTP PA P N N 256 GTP O1A O N N 257 GTP O2A O N N 258 GTP "O5'" O N N 259 GTP "C5'" C N N 260 GTP "C4'" C N R 261 GTP "O4'" O N N 262 GTP "C3'" C N S 263 GTP "O3'" O N N 264 GTP "C2'" C N R 265 GTP "O2'" O N N 266 GTP "C1'" C N R 267 GTP N9 N Y N 268 GTP C8 C Y N 269 GTP N7 N Y N 270 GTP C5 C Y N 271 GTP C6 C N N 272 GTP O6 O N N 273 GTP N1 N N N 274 GTP C2 C N N 275 GTP N2 N N N 276 GTP N3 N N N 277 GTP C4 C Y N 278 GTP HOG2 H N N 279 GTP HOG3 H N N 280 GTP HOB2 H N N 281 GTP HOA2 H N N 282 GTP "H5'" H N N 283 GTP "H5''" H N N 284 GTP "H4'" H N N 285 GTP "H3'" H N N 286 GTP "HO3'" H N N 287 GTP "H2'" H N N 288 GTP "HO2'" H N N 289 GTP "H1'" H N N 290 GTP H8 H N N 291 GTP HN1 H N N 292 GTP HN21 H N N 293 GTP HN22 H N N 294 HIS N N N N 295 HIS CA C N S 296 HIS C C N N 297 HIS O O N N 298 HIS CB C N N 299 HIS CG C Y N 300 HIS ND1 N Y N 301 HIS CD2 C Y N 302 HIS CE1 C Y N 303 HIS NE2 N Y N 304 HIS OXT O N N 305 HIS H H N N 306 HIS H2 H N N 307 HIS HA H N N 308 HIS HB2 H N N 309 HIS HB3 H N N 310 HIS HD1 H N N 311 HIS HD2 H N N 312 HIS HE1 H N N 313 HIS HE2 H N N 314 HIS HXT H N N 315 ILE N N N N 316 ILE CA C N S 317 ILE C C N N 318 ILE O O N N 319 ILE CB C N S 320 ILE CG1 C N N 321 ILE CG2 C N N 322 ILE CD1 C N N 323 ILE OXT O N N 324 ILE H H N N 325 ILE H2 H N N 326 ILE HA H N N 327 ILE HB H N N 328 ILE HG12 H N N 329 ILE HG13 H N N 330 ILE HG21 H N N 331 ILE HG22 H N N 332 ILE HG23 H N N 333 ILE HD11 H N N 334 ILE HD12 H N N 335 ILE HD13 H N N 336 ILE HXT H N N 337 LEU N N N N 338 LEU CA C N S 339 LEU C C N N 340 LEU O O N N 341 LEU CB C N N 342 LEU CG C N N 343 LEU CD1 C N N 344 LEU CD2 C N N 345 LEU OXT O N N 346 LEU H H N N 347 LEU H2 H N N 348 LEU HA H N N 349 LEU HB2 H N N 350 LEU HB3 H N N 351 LEU HG H N N 352 LEU HD11 H N N 353 LEU HD12 H N N 354 LEU HD13 H N N 355 LEU HD21 H N N 356 LEU HD22 H N N 357 LEU HD23 H N N 358 LEU HXT H N N 359 LYS N N N N 360 LYS CA C N S 361 LYS C C N N 362 LYS O O N N 363 LYS CB C N N 364 LYS CG C N N 365 LYS CD C N N 366 LYS CE C N N 367 LYS NZ N N N 368 LYS OXT O N N 369 LYS H H N N 370 LYS H2 H N N 371 LYS HA H N N 372 LYS HB2 H N N 373 LYS HB3 H N N 374 LYS HG2 H N N 375 LYS HG3 H N N 376 LYS HD2 H N N 377 LYS HD3 H N N 378 LYS HE2 H N N 379 LYS HE3 H N N 380 LYS HZ1 H N N 381 LYS HZ2 H N N 382 LYS HZ3 H N N 383 LYS HXT H N N 384 MET N N N N 385 MET CA C N S 386 MET C C N N 387 MET O O N N 388 MET CB C N N 389 MET CG C N N 390 MET SD S N N 391 MET CE C N N 392 MET OXT O N N 393 MET H H N N 394 MET H2 H N N 395 MET HA H N N 396 MET HB2 H N N 397 MET HB3 H N N 398 MET HG2 H N N 399 MET HG3 H N N 400 MET HE1 H N N 401 MET HE2 H N N 402 MET HE3 H N N 403 MET HXT H N N 404 PHE N N N N 405 PHE CA C N S 406 PHE C C N N 407 PHE O O N N 408 PHE CB C N N 409 PHE CG C Y N 410 PHE CD1 C Y N 411 PHE CD2 C Y N 412 PHE CE1 C Y N 413 PHE CE2 C Y N 414 PHE CZ C Y N 415 PHE OXT O N N 416 PHE H H N N 417 PHE H2 H N N 418 PHE HA H N N 419 PHE HB2 H N N 420 PHE HB3 H N N 421 PHE HD1 H N N 422 PHE HD2 H N N 423 PHE HE1 H N N 424 PHE HE2 H N N 425 PHE HZ H N N 426 PHE HXT H N N 427 PRO N N N N 428 PRO CA C N S 429 PRO C C N N 430 PRO O O N N 431 PRO CB C N N 432 PRO CG C N N 433 PRO CD C N N 434 PRO OXT O N N 435 PRO H H N N 436 PRO HA H N N 437 PRO HB2 H N N 438 PRO HB3 H N N 439 PRO HG2 H N N 440 PRO HG3 H N N 441 PRO HD2 H N N 442 PRO HD3 H N N 443 PRO HXT H N N 444 SER N N N N 445 SER CA C N S 446 SER C C N N 447 SER O O N N 448 SER CB C N N 449 SER OG O N N 450 SER OXT O N N 451 SER H H N N 452 SER H2 H N N 453 SER HA H N N 454 SER HB2 H N N 455 SER HB3 H N N 456 SER HG H N N 457 SER HXT H N N 458 SO4 S S N N 459 SO4 O1 O N N 460 SO4 O2 O N N 461 SO4 O3 O N N 462 SO4 O4 O N N 463 THR N N N N 464 THR CA C N S 465 THR C C N N 466 THR O O N N 467 THR CB C N R 468 THR OG1 O N N 469 THR CG2 C N N 470 THR OXT O N N 471 THR H H N N 472 THR H2 H N N 473 THR HA H N N 474 THR HB H N N 475 THR HG1 H N N 476 THR HG21 H N N 477 THR HG22 H N N 478 THR HG23 H N N 479 THR HXT H N N 480 TYR N N N N 481 TYR CA C N S 482 TYR C C N N 483 TYR O O N N 484 TYR CB C N N 485 TYR CG C Y N 486 TYR CD1 C Y N 487 TYR CD2 C Y N 488 TYR CE1 C Y N 489 TYR CE2 C Y N 490 TYR CZ C Y N 491 TYR OH O N N 492 TYR OXT O N N 493 TYR H H N N 494 TYR H2 H N N 495 TYR HA H N N 496 TYR HB2 H N N 497 TYR HB3 H N N 498 TYR HD1 H N N 499 TYR HD2 H N N 500 TYR HE1 H N N 501 TYR HE2 H N N 502 TYR HH H N N 503 TYR HXT H N N 504 U OP3 O N N 505 U P P N N 506 U OP1 O N N 507 U OP2 O N N 508 U "O5'" O N N 509 U "C5'" C N N 510 U "C4'" C N R 511 U "O4'" O N N 512 U "C3'" C N S 513 U "O3'" O N N 514 U "C2'" C N R 515 U "O2'" O N N 516 U "C1'" C N R 517 U N1 N N N 518 U C2 C N N 519 U O2 O N N 520 U N3 N N N 521 U C4 C N N 522 U O4 O N N 523 U C5 C N N 524 U C6 C N N 525 U HOP3 H N N 526 U HOP2 H N N 527 U "H5'" H N N 528 U "H5''" H N N 529 U "H4'" H N N 530 U "H3'" H N N 531 U "HO3'" H N N 532 U "H2'" H N N 533 U "HO2'" H N N 534 U "H1'" H N N 535 U H3 H N N 536 U H5 H N N 537 U H6 H N N 538 VAL N N N N 539 VAL CA C N S 540 VAL C C N N 541 VAL O O N N 542 VAL CB C N N 543 VAL CG1 C N N 544 VAL CG2 C N N 545 VAL OXT O N N 546 VAL H H N N 547 VAL H2 H N N 548 VAL HA H N N 549 VAL HB H N N 550 VAL HG11 H N N 551 VAL HG12 H N N 552 VAL HG13 H N N 553 VAL HG21 H N N 554 VAL HG22 H N N 555 VAL HG23 H N N 556 VAL HXT H N N 557 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 CYS N CA sing N N 145 CYS N H sing N N 146 CYS N H2 sing N N 147 CYS CA C sing N N 148 CYS CA CB sing N N 149 CYS CA HA sing N N 150 CYS C O doub N N 151 CYS C OXT sing N N 152 CYS CB SG sing N N 153 CYS CB HB2 sing N N 154 CYS CB HB3 sing N N 155 CYS SG HG sing N N 156 CYS OXT HXT sing N N 157 G OP3 P sing N N 158 G OP3 HOP3 sing N N 159 G P OP1 doub N N 160 G P OP2 sing N N 161 G P "O5'" sing N N 162 G OP2 HOP2 sing N N 163 G "O5'" "C5'" sing N N 164 G "C5'" "C4'" sing N N 165 G "C5'" "H5'" sing N N 166 G "C5'" "H5''" sing N N 167 G "C4'" "O4'" sing N N 168 G "C4'" "C3'" sing N N 169 G "C4'" "H4'" sing N N 170 G "O4'" "C1'" sing N N 171 G "C3'" "O3'" sing N N 172 G "C3'" "C2'" sing N N 173 G "C3'" "H3'" sing N N 174 G "O3'" "HO3'" sing N N 175 G "C2'" "O2'" sing N N 176 G "C2'" "C1'" sing N N 177 G "C2'" "H2'" sing N N 178 G "O2'" "HO2'" sing N N 179 G "C1'" N9 sing N N 180 G "C1'" "H1'" sing N N 181 G N9 C8 sing Y N 182 G N9 C4 sing Y N 183 G C8 N7 doub Y N 184 G C8 H8 sing N N 185 G N7 C5 sing Y N 186 G C5 C6 sing N N 187 G C5 C4 doub Y N 188 G C6 O6 doub N N 189 G C6 N1 sing N N 190 G N1 C2 sing N N 191 G N1 H1 sing N N 192 G C2 N2 sing N N 193 G C2 N3 doub N N 194 G N2 H21 sing N N 195 G N2 H22 sing N N 196 G N3 C4 sing N N 197 GLN N CA sing N N 198 GLN N H sing N N 199 GLN N H2 sing N N 200 GLN CA C sing N N 201 GLN CA CB sing N N 202 GLN CA HA sing N N 203 GLN C O doub N N 204 GLN C OXT sing N N 205 GLN CB CG sing N N 206 GLN CB HB2 sing N N 207 GLN CB HB3 sing N N 208 GLN CG CD sing N N 209 GLN CG HG2 sing N N 210 GLN CG HG3 sing N N 211 GLN CD OE1 doub N N 212 GLN CD NE2 sing N N 213 GLN NE2 HE21 sing N N 214 GLN NE2 HE22 sing N N 215 GLN OXT HXT sing N N 216 GLU N CA sing N N 217 GLU N H sing N N 218 GLU N H2 sing N N 219 GLU CA C sing N N 220 GLU CA CB sing N N 221 GLU CA HA sing N N 222 GLU C O doub N N 223 GLU C OXT sing N N 224 GLU CB CG sing N N 225 GLU CB HB2 sing N N 226 GLU CB HB3 sing N N 227 GLU CG CD sing N N 228 GLU CG HG2 sing N N 229 GLU CG HG3 sing N N 230 GLU CD OE1 doub N N 231 GLU CD OE2 sing N N 232 GLU OE2 HE2 sing N N 233 GLU OXT HXT sing N N 234 GLY N CA sing N N 235 GLY N H sing N N 236 GLY N H2 sing N N 237 GLY CA C sing N N 238 GLY CA HA2 sing N N 239 GLY CA HA3 sing N N 240 GLY C O doub N N 241 GLY C OXT sing N N 242 GLY OXT HXT sing N N 243 GTP PG O1G doub N N 244 GTP PG O2G sing N N 245 GTP PG O3G sing N N 246 GTP PG O3B sing N N 247 GTP O2G HOG2 sing N N 248 GTP O3G HOG3 sing N N 249 GTP O3B PB sing N N 250 GTP PB O1B doub N N 251 GTP PB O2B sing N N 252 GTP PB O3A sing N N 253 GTP O2B HOB2 sing N N 254 GTP O3A PA sing N N 255 GTP PA O1A doub N N 256 GTP PA O2A sing N N 257 GTP PA "O5'" sing N N 258 GTP O2A HOA2 sing N N 259 GTP "O5'" "C5'" sing N N 260 GTP "C5'" "C4'" sing N N 261 GTP "C5'" "H5'" sing N N 262 GTP "C5'" "H5''" sing N N 263 GTP "C4'" "O4'" sing N N 264 GTP "C4'" "C3'" sing N N 265 GTP "C4'" "H4'" sing N N 266 GTP "O4'" "C1'" sing N N 267 GTP "C3'" "O3'" sing N N 268 GTP "C3'" "C2'" sing N N 269 GTP "C3'" "H3'" sing N N 270 GTP "O3'" "HO3'" sing N N 271 GTP "C2'" "O2'" sing N N 272 GTP "C2'" "C1'" sing N N 273 GTP "C2'" "H2'" sing N N 274 GTP "O2'" "HO2'" sing N N 275 GTP "C1'" N9 sing N N 276 GTP "C1'" "H1'" sing N N 277 GTP N9 C8 sing Y N 278 GTP N9 C4 sing Y N 279 GTP C8 N7 doub Y N 280 GTP C8 H8 sing N N 281 GTP N7 C5 sing Y N 282 GTP C5 C6 sing N N 283 GTP C5 C4 doub Y N 284 GTP C6 O6 doub N N 285 GTP C6 N1 sing N N 286 GTP N1 C2 sing N N 287 GTP N1 HN1 sing N N 288 GTP C2 N2 sing N N 289 GTP C2 N3 doub N N 290 GTP N2 HN21 sing N N 291 GTP N2 HN22 sing N N 292 GTP N3 C4 sing N N 293 HIS N CA sing N N 294 HIS N H sing N N 295 HIS N H2 sing N N 296 HIS CA C sing N N 297 HIS CA CB sing N N 298 HIS CA HA sing N N 299 HIS C O doub N N 300 HIS C OXT sing N N 301 HIS CB CG sing N N 302 HIS CB HB2 sing N N 303 HIS CB HB3 sing N N 304 HIS CG ND1 sing Y N 305 HIS CG CD2 doub Y N 306 HIS ND1 CE1 doub Y N 307 HIS ND1 HD1 sing N N 308 HIS CD2 NE2 sing Y N 309 HIS CD2 HD2 sing N N 310 HIS CE1 NE2 sing Y N 311 HIS CE1 HE1 sing N N 312 HIS NE2 HE2 sing N N 313 HIS OXT HXT sing N N 314 ILE N CA sing N N 315 ILE N H sing N N 316 ILE N H2 sing N N 317 ILE CA C sing N N 318 ILE CA CB sing N N 319 ILE CA HA sing N N 320 ILE C O doub N N 321 ILE C OXT sing N N 322 ILE CB CG1 sing N N 323 ILE CB CG2 sing N N 324 ILE CB HB sing N N 325 ILE CG1 CD1 sing N N 326 ILE CG1 HG12 sing N N 327 ILE CG1 HG13 sing N N 328 ILE CG2 HG21 sing N N 329 ILE CG2 HG22 sing N N 330 ILE CG2 HG23 sing N N 331 ILE CD1 HD11 sing N N 332 ILE CD1 HD12 sing N N 333 ILE CD1 HD13 sing N N 334 ILE OXT HXT sing N N 335 LEU N CA sing N N 336 LEU N H sing N N 337 LEU N H2 sing N N 338 LEU CA C sing N N 339 LEU CA CB sing N N 340 LEU CA HA sing N N 341 LEU C O doub N N 342 LEU C OXT sing N N 343 LEU CB CG sing N N 344 LEU CB HB2 sing N N 345 LEU CB HB3 sing N N 346 LEU CG CD1 sing N N 347 LEU CG CD2 sing N N 348 LEU CG HG sing N N 349 LEU CD1 HD11 sing N N 350 LEU CD1 HD12 sing N N 351 LEU CD1 HD13 sing N N 352 LEU CD2 HD21 sing N N 353 LEU CD2 HD22 sing N N 354 LEU CD2 HD23 sing N N 355 LEU OXT HXT sing N N 356 LYS N CA sing N N 357 LYS N H sing N N 358 LYS N H2 sing N N 359 LYS CA C sing N N 360 LYS CA CB sing N N 361 LYS CA HA sing N N 362 LYS C O doub N N 363 LYS C OXT sing N N 364 LYS CB CG sing N N 365 LYS CB HB2 sing N N 366 LYS CB HB3 sing N N 367 LYS CG CD sing N N 368 LYS CG HG2 sing N N 369 LYS CG HG3 sing N N 370 LYS CD CE sing N N 371 LYS CD HD2 sing N N 372 LYS CD HD3 sing N N 373 LYS CE NZ sing N N 374 LYS CE HE2 sing N N 375 LYS CE HE3 sing N N 376 LYS NZ HZ1 sing N N 377 LYS NZ HZ2 sing N N 378 LYS NZ HZ3 sing N N 379 LYS OXT HXT sing N N 380 MET N CA sing N N 381 MET N H sing N N 382 MET N H2 sing N N 383 MET CA C sing N N 384 MET CA CB sing N N 385 MET CA HA sing N N 386 MET C O doub N N 387 MET C OXT sing N N 388 MET CB CG sing N N 389 MET CB HB2 sing N N 390 MET CB HB3 sing N N 391 MET CG SD sing N N 392 MET CG HG2 sing N N 393 MET CG HG3 sing N N 394 MET SD CE sing N N 395 MET CE HE1 sing N N 396 MET CE HE2 sing N N 397 MET CE HE3 sing N N 398 MET OXT HXT sing N N 399 PHE N CA sing N N 400 PHE N H sing N N 401 PHE N H2 sing N N 402 PHE CA C sing N N 403 PHE CA CB sing N N 404 PHE CA HA sing N N 405 PHE C O doub N N 406 PHE C OXT sing N N 407 PHE CB CG sing N N 408 PHE CB HB2 sing N N 409 PHE CB HB3 sing N N 410 PHE CG CD1 doub Y N 411 PHE CG CD2 sing Y N 412 PHE CD1 CE1 sing Y N 413 PHE CD1 HD1 sing N N 414 PHE CD2 CE2 doub Y N 415 PHE CD2 HD2 sing N N 416 PHE CE1 CZ doub Y N 417 PHE CE1 HE1 sing N N 418 PHE CE2 CZ sing Y N 419 PHE CE2 HE2 sing N N 420 PHE CZ HZ sing N N 421 PHE OXT HXT sing N N 422 PRO N CA sing N N 423 PRO N CD sing N N 424 PRO N H sing N N 425 PRO CA C sing N N 426 PRO CA CB sing N N 427 PRO CA HA sing N N 428 PRO C O doub N N 429 PRO C OXT sing N N 430 PRO CB CG sing N N 431 PRO CB HB2 sing N N 432 PRO CB HB3 sing N N 433 PRO CG CD sing N N 434 PRO CG HG2 sing N N 435 PRO CG HG3 sing N N 436 PRO CD HD2 sing N N 437 PRO CD HD3 sing N N 438 PRO OXT HXT sing N N 439 SER N CA sing N N 440 SER N H sing N N 441 SER N H2 sing N N 442 SER CA C sing N N 443 SER CA CB sing N N 444 SER CA HA sing N N 445 SER C O doub N N 446 SER C OXT sing N N 447 SER CB OG sing N N 448 SER CB HB2 sing N N 449 SER CB HB3 sing N N 450 SER OG HG sing N N 451 SER OXT HXT sing N N 452 SO4 S O1 doub N N 453 SO4 S O2 doub N N 454 SO4 S O3 sing N N 455 SO4 S O4 sing N N 456 THR N CA sing N N 457 THR N H sing N N 458 THR N H2 sing N N 459 THR CA C sing N N 460 THR CA CB sing N N 461 THR CA HA sing N N 462 THR C O doub N N 463 THR C OXT sing N N 464 THR CB OG1 sing N N 465 THR CB CG2 sing N N 466 THR CB HB sing N N 467 THR OG1 HG1 sing N N 468 THR CG2 HG21 sing N N 469 THR CG2 HG22 sing N N 470 THR CG2 HG23 sing N N 471 THR OXT HXT sing N N 472 TYR N CA sing N N 473 TYR N H sing N N 474 TYR N H2 sing N N 475 TYR CA C sing N N 476 TYR CA CB sing N N 477 TYR CA HA sing N N 478 TYR C O doub N N 479 TYR C OXT sing N N 480 TYR CB CG sing N N 481 TYR CB HB2 sing N N 482 TYR CB HB3 sing N N 483 TYR CG CD1 doub Y N 484 TYR CG CD2 sing Y N 485 TYR CD1 CE1 sing Y N 486 TYR CD1 HD1 sing N N 487 TYR CD2 CE2 doub Y N 488 TYR CD2 HD2 sing N N 489 TYR CE1 CZ doub Y N 490 TYR CE1 HE1 sing N N 491 TYR CE2 CZ sing Y N 492 TYR CE2 HE2 sing N N 493 TYR CZ OH sing N N 494 TYR OH HH sing N N 495 TYR OXT HXT sing N N 496 U OP3 P sing N N 497 U OP3 HOP3 sing N N 498 U P OP1 doub N N 499 U P OP2 sing N N 500 U P "O5'" sing N N 501 U OP2 HOP2 sing N N 502 U "O5'" "C5'" sing N N 503 U "C5'" "C4'" sing N N 504 U "C5'" "H5'" sing N N 505 U "C5'" "H5''" sing N N 506 U "C4'" "O4'" sing N N 507 U "C4'" "C3'" sing N N 508 U "C4'" "H4'" sing N N 509 U "O4'" "C1'" sing N N 510 U "C3'" "O3'" sing N N 511 U "C3'" "C2'" sing N N 512 U "C3'" "H3'" sing N N 513 U "O3'" "HO3'" sing N N 514 U "C2'" "O2'" sing N N 515 U "C2'" "C1'" sing N N 516 U "C2'" "H2'" sing N N 517 U "O2'" "HO2'" sing N N 518 U "C1'" N1 sing N N 519 U "C1'" "H1'" sing N N 520 U N1 C2 sing N N 521 U N1 C6 sing N N 522 U C2 O2 doub N N 523 U C2 N3 sing N N 524 U N3 C4 sing N N 525 U N3 H3 sing N N 526 U C4 O4 doub N N 527 U C4 C5 sing N N 528 U C5 C6 doub N N 529 U C5 H5 sing N N 530 U C6 H6 sing N N 531 VAL N CA sing N N 532 VAL N H sing N N 533 VAL N H2 sing N N 534 VAL CA C sing N N 535 VAL CA CB sing N N 536 VAL CA HA sing N N 537 VAL C O doub N N 538 VAL C OXT sing N N 539 VAL CB CG1 sing N N 540 VAL CB CG2 sing N N 541 VAL CB HB sing N N 542 VAL CG1 HG11 sing N N 543 VAL CG1 HG12 sing N N 544 VAL CG1 HG13 sing N N 545 VAL CG2 HG21 sing N N 546 VAL CG2 HG22 sing N N 547 VAL CG2 HG23 sing N N 548 VAL OXT HXT sing N N 549 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5Y7M 'double helix' 5Y7M 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B G 1 1_555 B C 50 1_555 -0.098 -0.090 0.507 -6.633 -15.193 1.656 1 B_G2:C51_B B 2 ? B 51 ? 19 1 1 B U 2 1_555 B G 49 1_555 2.655 -0.921 0.397 -2.607 -11.404 -2.660 2 B_U3:G50_B B 3 ? B 50 ? 28 1 1 B A 3 1_555 B U 46 1_555 -4.338 -2.628 -0.534 16.957 0.166 -79.131 3 B_A4:U47_B B 4 ? B 47 ? 24 4 1 B G 5 1_555 B C 45 1_555 -0.559 -0.276 0.181 0.635 -10.901 -4.178 4 B_G6:C46_B B 6 ? B 46 ? 19 1 1 B G 6 1_555 B C 44 1_555 -0.425 0.086 0.072 -7.942 -17.377 2.465 5 B_G7:C45_B B 7 ? B 45 ? 19 1 1 B U 7 1_555 B G 43 1_555 2.322 -0.492 0.074 1.457 -4.756 -2.229 6 B_U8:G44_B B 8 ? B 44 ? 28 1 1 B U 8 1_555 B A 42 1_555 -3.807 6.057 0.659 -27.130 0.172 -155.588 7 B_U9:A43_B B 9 ? B 43 ? ? ? 1 B A 10 1_555 B U 38 1_555 -0.218 0.063 -0.092 -15.623 -12.119 -10.273 8 B_A11:U39_B B 11 ? B 39 ? 20 1 1 B C 11 1_555 B A 37 1_555 2.799 -0.393 1.054 -4.660 -1.946 7.611 9 B_C12:A38_B B 12 ? B 38 ? ? 1 1 B C 12 1_555 B G 36 1_555 -0.172 -0.362 -0.050 1.745 -16.957 2.360 10 B_C13:G37_B B 13 ? B 37 ? 19 1 1 B C 13 1_555 B G 35 1_555 -0.524 -0.116 -0.304 8.963 -12.121 -9.061 11 B_C14:G36_B B 14 ? B 36 ? 19 1 1 B G 14 1_555 B U 34 1_555 -2.114 -0.224 -0.679 -5.538 1.056 3.483 12 B_G15:U35_B B 15 ? B 35 ? 28 1 1 B C 15 1_555 B G 33 1_555 -0.048 -0.076 -0.644 3.536 -3.111 3.041 13 B_C16:G34_B B 16 ? B 34 ? 19 1 1 B A 16 1_555 B U 32 1_555 -0.460 0.217 -0.029 -5.674 0.981 3.719 14 B_A17:U33_B B 17 ? B 33 ? 20 1 1 B G 20 1_555 B A 31 1_555 6.360 -3.793 0.451 23.709 22.295 12.040 15 B_G21:A32_B B 21 ? B 32 ? 11 9 1 B A 21 1_555 B G 30 1_555 -6.723 -5.157 0.611 -28.769 -7.883 -10.389 16 B_A22:G31_B B 22 ? B 31 ? 11 10 1 B U 22 1_555 B G 29 1_555 -7.349 -2.570 -0.491 -14.003 -10.151 18.492 17 B_U23:G30_B B 23 ? B 30 ? ? ? 1 B C 23 1_555 B G 28 1_555 0.265 0.016 -0.237 -3.522 5.343 6.177 18 B_C24:G29_B B 24 ? B 29 ? 19 1 1 B G 24 1_555 B A 27 1_555 7.054 -5.605 1.267 17.876 5.822 -9.789 19 B_G25:A28_B B 25 ? B 28 ? ? ? 1 D G 1 1_555 D C 50 1_555 0.105 0.002 0.476 -5.568 -18.212 3.812 20 D_G2:C51_D D 2 ? D 51 ? 19 1 1 D U 2 1_555 D G 49 1_555 2.305 -0.725 0.220 -0.790 -14.531 -4.585 21 D_U3:G50_D D 3 ? D 50 ? 28 1 1 D A 3 1_555 D U 46 1_555 -4.389 -2.895 -0.495 20.054 -1.880 -73.794 22 D_A4:U47_D D 4 ? D 47 ? 24 4 1 D G 5 1_555 D C 45 1_555 -0.429 -0.234 -0.007 -1.076 -11.998 1.278 23 D_G6:C46_D D 6 ? D 46 ? 19 1 1 D G 6 1_555 D C 44 1_555 -0.113 -0.111 -0.160 -11.576 -15.346 -2.044 24 D_G7:C45_D D 7 ? D 45 ? 19 1 1 D U 7 1_555 D G 43 1_555 2.727 -0.689 -0.151 1.710 -10.315 -2.291 25 D_U8:G44_D D 8 ? D 44 ? 28 1 1 D U 8 1_555 D A 42 1_555 -3.399 6.630 0.587 -27.649 9.886 -160.963 26 D_U9:A43_D D 9 ? D 43 ? ? ? 1 D A 10 1_555 D U 38 1_555 0.109 0.279 -0.466 -25.894 -16.858 -5.099 27 D_A11:U39_D D 11 ? D 39 ? 20 1 1 D C 11 1_555 D A 37 1_555 1.532 -0.047 0.343 2.916 -14.251 5.649 28 D_C12:A38_D D 12 ? D 38 ? ? 1 1 D C 12 1_555 D G 36 1_555 0.300 -0.363 -0.175 4.596 -18.349 -8.325 29 D_C13:G37_D D 13 ? D 37 ? 19 1 1 D C 13 1_555 D G 35 1_555 1.244 -0.050 0.098 6.342 -1.987 2.472 30 D_C14:G36_D D 14 ? D 36 ? 19 1 1 D G 14 1_555 D U 34 1_555 -2.318 -0.326 -0.985 -7.012 -5.951 1.822 31 D_G15:U35_D D 15 ? D 35 ? 28 1 1 D C 15 1_555 D G 33 1_555 -0.158 -0.064 -1.031 3.868 -9.556 2.013 32 D_C16:G34_D D 16 ? D 34 ? 19 1 1 D A 16 1_555 D U 32 1_555 0.608 0.109 -0.212 -9.571 2.954 5.232 33 D_A17:U33_D D 17 ? D 33 ? 20 1 1 D G 20 1_555 D A 31 1_555 6.560 -4.066 0.310 27.112 24.663 12.108 34 D_G21:A32_D D 21 ? D 32 ? 11 9 1 D A 21 1_555 D G 30 1_555 -6.807 -5.009 0.585 -30.801 -9.079 -16.797 35 D_A22:G31_D D 22 ? D 31 ? 11 10 1 D U 22 1_555 D G 29 1_555 -7.529 -2.705 -0.374 -10.111 -7.213 15.410 36 D_U23:G30_D D 23 ? D 30 ? ? ? 1 D C 23 1_555 D G 28 1_555 0.228 0.068 -0.198 -2.240 5.312 4.356 37 D_C24:G29_D D 24 ? D 29 ? 19 1 1 D G 24 1_555 D A 27 1_555 7.051 -5.237 1.231 18.417 2.971 -10.917 38 D_G25:A28_D D 25 ? D 28 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B G 1 1_555 B C 50 1_555 B U 2 1_555 B G 49 1_555 -0.293 -1.278 3.209 1.177 1.106 44.049 -1.804 0.498 3.169 1.474 -1.568 44.078 1 BB_G2U3:G50C51_BB B 2 ? B 51 ? B 3 ? B 50 ? 1 B U 2 1_555 B G 49 1_555 B A 3 1_555 B U 46 1_555 0.327 -0.301 6.566 -8.084 -3.010 43.093 0.168 -1.973 6.412 -4.049 10.875 43.907 2 BB_U3A4:U47G50_BB B 3 ? B 50 ? B 4 ? B 47 ? 1 B A 3 1_555 B U 46 1_555 B G 5 1_555 B C 45 1_555 2.549 -1.815 3.765 -8.508 3.325 69.409 -1.714 -2.557 3.393 2.907 7.439 69.933 3 BB_A4G6:C46U47_BB B 4 ? B 47 ? B 6 ? B 46 ? 1 B G 5 1_555 B C 45 1_555 B G 6 1_555 B C 44 1_555 1.325 -2.257 3.364 4.375 8.130 28.822 -5.919 -1.684 2.804 15.828 -8.517 30.235 4 BB_G6G7:C45C46_BB B 6 ? B 46 ? B 7 ? B 45 ? 1 B G 6 1_555 B C 44 1_555 B U 7 1_555 B G 43 1_555 -0.648 -1.179 3.045 0.778 4.102 43.931 -1.921 0.929 2.918 5.468 -1.038 44.119 5 BB_G7U8:G44C45_BB B 7 ? B 45 ? B 8 ? B 44 ? 1 B U 7 1_555 B G 43 1_555 B U 8 1_555 B A 42 1_555 -3.563 0.353 -0.059 68.140 158.663 87.574 0.349 1.709 -0.820 80.366 -34.514 174.715 6 BB_U8U9:A43G44_BB B 8 ? B 44 ? B 9 ? B 43 ? 1 B A 10 1_555 B U 38 1_555 B C 11 1_555 B A 37 1_555 0.763 -1.016 3.043 -6.449 11.600 45.923 -2.074 -1.398 2.605 14.514 8.069 47.703 7 BB_A11C12:A38U39_BB B 11 ? B 39 ? B 12 ? B 38 ? 1 B C 11 1_555 B A 37 1_555 B C 12 1_555 B G 36 1_555 0.017 -2.349 2.927 13.508 -4.905 17.998 -4.189 4.650 2.804 -13.265 -36.535 22.995 8 BB_C12C13:G37A38_BB B 12 ? B 38 ? B 13 ? B 37 ? 1 B C 12 1_555 B G 36 1_555 B C 13 1_555 B G 35 1_555 -0.197 -1.329 3.156 5.003 5.652 25.747 -4.205 1.610 2.721 12.350 -10.933 26.812 9 BB_C13C14:G36G37_BB B 13 ? B 37 ? B 14 ? B 36 ? 1 B C 13 1_555 B G 35 1_555 B G 14 1_555 B U 34 1_555 2.053 -1.992 3.858 4.139 8.373 24.671 -6.908 -3.248 3.310 18.758 -9.273 26.354 10 BB_C14G15:U35G36_BB B 14 ? B 36 ? B 15 ? B 35 ? 1 B G 14 1_555 B U 34 1_555 B C 15 1_555 B G 33 1_555 -0.309 -1.495 3.054 -1.048 7.067 40.860 -2.788 0.336 2.776 10.030 1.487 41.454 11 BB_G15C16:G34U35_BB B 15 ? B 35 ? B 16 ? B 34 ? 1 B C 15 1_555 B G 33 1_555 B A 16 1_555 B U 32 1_555 0.251 -1.600 3.354 -3.572 13.042 30.815 -4.753 -0.978 2.452 23.194 6.352 33.586 12 BB_C16A17:U33G34_BB B 16 ? B 34 ? B 17 ? B 33 ? 1 B G 20 1_555 B A 31 1_555 B A 21 1_555 B G 30 1_555 -1.684 -1.535 4.669 -5.264 -7.621 -6.723 19.512 -16.606 0.952 44.513 -30.748 -11.440 13 BB_G21A22:G31A32_BB B 21 ? B 32 ? B 22 ? B 31 ? 1 B A 21 1_555 B G 30 1_555 B U 22 1_555 B G 29 1_555 1.399 -0.500 3.347 -10.402 12.190 32.098 -2.461 -3.683 2.450 20.525 17.516 35.782 14 BB_A22U23:G30G31_BB B 22 ? B 31 ? B 23 ? B 30 ? 1 B U 22 1_555 B G 29 1_555 B C 23 1_555 B G 28 1_555 -0.774 0.051 3.394 -10.319 10.996 56.823 -0.555 0.220 3.432 11.336 10.638 58.628 15 BB_U23C24:G29G30_BB B 23 ? B 30 ? B 24 ? B 29 ? 1 B C 23 1_555 B G 28 1_555 B G 24 1_555 B A 27 1_555 -1.956 -0.656 2.657 -6.402 10.512 55.037 -1.189 1.773 2.694 11.219 6.832 56.292 16 BB_C24G25:A28G29_BB B 24 ? B 29 ? B 25 ? B 28 ? 1 D G 1 1_555 D C 50 1_555 D U 2 1_555 D G 49 1_555 -0.504 -1.108 3.224 1.704 1.235 40.678 -1.726 0.908 3.167 1.775 -2.450 40.730 17 DD_G2U3:G50C51_DD D 2 ? D 51 ? D 3 ? D 50 ? 1 D U 2 1_555 D G 49 1_555 D A 3 1_555 D U 46 1_555 0.820 0.119 6.516 -9.179 -4.221 44.132 0.897 -2.679 6.199 -5.532 12.030 45.217 18 DD_U3A4:U47G50_DD D 3 ? D 50 ? D 4 ? D 47 ? 1 D A 3 1_555 D U 46 1_555 D G 5 1_555 D C 45 1_555 2.553 -1.627 3.917 -8.281 4.757 71.386 -1.568 -2.492 3.543 4.059 7.065 71.938 19 DD_A4G6:C46U47_DD D 4 ? D 47 ? D 6 ? D 46 ? 1 D G 5 1_555 D C 45 1_555 D G 6 1_555 D C 44 1_555 0.594 -2.156 3.423 3.988 9.334 30.312 -5.551 -0.383 2.711 17.253 -7.371 31.928 20 DD_G6G7:C45C46_DD D 6 ? D 46 ? D 7 ? D 45 ? 1 D G 6 1_555 D C 44 1_555 D U 7 1_555 D G 43 1_555 -0.216 -1.104 2.960 1.834 1.019 43.242 -1.586 0.454 2.924 1.382 -2.486 43.290 21 DD_G7U8:G44C45_DD D 7 ? D 45 ? D 8 ? D 44 ? 1 D U 7 1_555 D G 43 1_555 D U 8 1_555 D A 42 1_555 2.820 -1.602 -0.624 -68.127 -158.439 -51.784 0.452 1.563 -0.594 81.167 -34.901 -173.222 22 DD_U8U9:A43G44_DD D 8 ? D 44 ? D 9 ? D 43 ? 1 D A 10 1_555 D U 38 1_555 D C 11 1_555 D A 37 1_555 0.817 -1.013 2.614 -4.309 4.363 35.286 -2.129 -1.804 2.363 7.130 7.043 35.798 23 DD_A11C12:A38U39_DD D 11 ? D 39 ? D 12 ? D 38 ? 1 D C 11 1_555 D A 37 1_555 D C 12 1_555 D G 36 1_555 0.095 -1.805 2.947 9.517 7.117 26.964 -4.834 1.526 2.307 14.408 -19.266 29.422 24 DD_C12C13:G37A38_DD D 12 ? D 38 ? D 13 ? D 37 ? 1 D C 12 1_555 D G 36 1_555 D C 13 1_555 D G 35 1_555 0.084 -1.746 3.271 -2.226 4.091 34.585 -3.512 -0.467 3.040 6.843 3.723 34.887 25 DD_C13C14:G36G37_DD D 13 ? D 37 ? D 14 ? D 36 ? 1 D C 13 1_555 D G 35 1_555 D G 14 1_555 D U 34 1_555 0.805 -2.658 3.718 7.190 10.169 15.418 -12.364 0.933 1.835 31.947 -22.589 19.796 26 DD_C14G15:U35G36_DD D 14 ? D 36 ? D 15 ? D 35 ? 1 D G 14 1_555 D U 34 1_555 D C 15 1_555 D G 33 1_555 -0.528 -1.405 3.030 -1.696 2.944 38.676 -2.443 0.605 2.939 4.435 2.554 38.819 27 DD_G15C16:G34U35_DD D 15 ? D 35 ? D 16 ? D 34 ? 1 D C 15 1_555 D G 33 1_555 D A 16 1_555 D U 32 1_555 0.398 -1.551 3.681 -6.427 13.431 32.877 -4.475 -1.584 2.739 22.358 10.698 36.007 28 DD_C16A17:U33G34_DD D 16 ? D 34 ? D 17 ? D 33 ? 1 D G 20 1_555 D A 31 1_555 D A 21 1_555 D G 30 1_555 -1.800 -1.576 4.771 -5.878 -5.016 -5.088 21.474 -24.878 0.630 36.795 -43.122 -9.250 29 DD_G21A22:G31A32_DD D 21 ? D 32 ? D 22 ? D 31 ? 1 D A 21 1_555 D G 30 1_555 D U 22 1_555 D G 29 1_555 1.451 -0.589 3.173 -11.149 9.585 29.013 -2.516 -4.296 2.186 17.764 20.664 32.454 30 DD_A22U23:G30G31_DD D 22 ? D 31 ? D 23 ? D 30 ? 1 D U 22 1_555 D G 29 1_555 D C 23 1_555 D G 28 1_555 -0.591 -0.164 3.375 -7.854 11.145 57.664 -0.759 0.181 3.343 11.380 8.020 59.119 31 DD_U23C24:G29G30_DD D 23 ? D 30 ? D 24 ? D 29 ? 1 D C 23 1_555 D G 28 1_555 D G 24 1_555 D A 27 1_555 -1.855 -0.629 2.736 -5.595 10.707 54.820 -1.188 1.703 2.741 11.473 5.995 56.035 32 DD_C24G25:A28G29_DD D 24 ? D 29 ? D 25 ? D 28 ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2CZW _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 5Y7M _atom_sites.fract_transf_matrix[1][1] 0.008821 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002383 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.005663 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017293 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S # loop_