HEADER OXIDOREDUCTASE 17-AUG-17 5Y7R TITLE QUATERNARY COMPLEX OF ASQJ-FE3+-2OG-CYCLOPEPTIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: IRON/ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE ASQJ; COMPND 3 CHAIN: B; COMPND 4 FRAGMENT: UNP RESIDUES 109-416; COMPND 5 SYNONYM: 4'-METHOXYVIRIDICATIN/ASPOQUINOLONE BIOSYNTHESIS CLUSTER COMPND 6 PROTEIN ASQJ,ASPOQUINOLONE BIOSYNTHESIS PROTEIN J; COMPND 7 EC: 1.14.-.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EMERICELLA NIDULANS (STRAIN FGSC A4 / ATCC SOURCE 3 38163 / CBS 112.46 / NRRL 194 / M139); SOURCE 4 ORGANISM_TAXID: 227321; SOURCE 5 STRAIN: FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139; SOURCE 6 GENE: ASQJ, AN9227; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INITIAL STEP FOR OLEFINATION, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR H.J.LIAO,T.S.LIN REVDAT 4 27-MAR-24 5Y7R 1 LINK REVDAT 3 21-FEB-18 5Y7R 1 JRNL REVDAT 2 31-JAN-18 5Y7R 1 JRNL REVDAT 1 24-JAN-18 5Y7R 0 JRNL AUTH H.J.LIAO,J.LI,J.L.HUANG,M.DAVIDSON,I.KURNIKOV,T.S.LIN, JRNL AUTH 2 J.L.LEE,M.KURNIKOVA,Y.GUO,N.L.CHAN,W.C.CHANG JRNL TITL INSIGHTS INTO THE DESATURATION OF CYCLOPEPTIN AND ITS C3 JRNL TITL 2 EPIMER CATALYZED BY A NON-HEME IRON ENZYME: STRUCTURAL JRNL TITL 3 CHARACTERIZATION AND MECHANISM ELUCIDATION. JRNL REF ANGEW. CHEM. INT. ED. ENGL. V. 57 1831 2018 JRNL REFN ESSN 1521-3773 JRNL PMID 29314482 JRNL DOI 10.1002/ANIE.201710567 REMARK 2 REMARK 2 RESOLUTION. 1.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.26 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.1 REMARK 3 NUMBER OF REFLECTIONS : 20769 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1039 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.2668 - 3.6777 0.97 3110 153 0.1364 0.1740 REMARK 3 2 3.6777 - 2.9200 0.99 3011 181 0.1756 0.2291 REMARK 3 3 2.9200 - 2.5511 0.97 2967 156 0.1863 0.2364 REMARK 3 4 2.5511 - 2.3180 0.93 2820 150 0.1867 0.2451 REMARK 3 5 2.3180 - 2.1519 0.92 2795 142 0.1857 0.2487 REMARK 3 6 2.1519 - 2.0250 0.93 2785 159 0.2093 0.2503 REMARK 3 7 2.0250 - 1.9236 0.73 2242 98 0.2264 0.3044 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2305 REMARK 3 ANGLE : 1.203 3145 REMARK 3 CHIRALITY : 0.071 370 REMARK 3 PLANARITY : 0.010 406 REMARK 3 DIHEDRAL : 9.170 1887 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 9 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.5464 -27.0894 -20.2068 REMARK 3 T TENSOR REMARK 3 T11: 0.3094 T22: 0.4585 REMARK 3 T33: 0.4177 T12: 0.0671 REMARK 3 T13: 0.0543 T23: -0.0422 REMARK 3 L TENSOR REMARK 3 L11: 1.8097 L22: 1.2671 REMARK 3 L33: 1.9394 L12: -0.4027 REMARK 3 L13: 0.4947 L23: 0.6358 REMARK 3 S TENSOR REMARK 3 S11: -0.0640 S12: 0.2109 S13: -0.0364 REMARK 3 S21: -0.2022 S22: 0.0607 S23: -0.4625 REMARK 3 S31: 0.3105 S32: 0.5270 S33: -0.0221 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 41 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.5741 -5.0276 -8.4256 REMARK 3 T TENSOR REMARK 3 T11: 0.3805 T22: 0.3570 REMARK 3 T33: 0.5721 T12: -0.0915 REMARK 3 T13: -0.0583 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 4.5185 L22: 2.5521 REMARK 3 L33: 4.2493 L12: -0.9800 REMARK 3 L13: -2.0509 L23: 0.8963 REMARK 3 S TENSOR REMARK 3 S11: -0.2130 S12: -0.2684 S13: 0.9376 REMARK 3 S21: -0.2744 S22: 0.2147 S23: -0.3321 REMARK 3 S31: -0.7781 S32: 0.8280 S33: 0.0346 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 58 THROUGH 146 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.5032 -17.0205 -9.3349 REMARK 3 T TENSOR REMARK 3 T11: 0.2601 T22: 0.2749 REMARK 3 T33: 0.2618 T12: 0.0254 REMARK 3 T13: 0.0030 T23: -0.0160 REMARK 3 L TENSOR REMARK 3 L11: 1.9532 L22: 2.1960 REMARK 3 L33: 1.2300 L12: 0.4134 REMARK 3 L13: 0.8554 L23: -0.3247 REMARK 3 S TENSOR REMARK 3 S11: -0.0601 S12: -0.1037 S13: 0.0804 REMARK 3 S21: 0.2214 S22: 0.0139 S23: -0.1373 REMARK 3 S31: -0.1208 S32: 0.0817 S33: 0.0427 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 147 THROUGH 161 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.6804 -27.5361 -16.1157 REMARK 3 T TENSOR REMARK 3 T11: 0.3149 T22: 0.2714 REMARK 3 T33: 0.2806 T12: 0.0105 REMARK 3 T13: 0.0236 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 2.7608 L22: 0.9636 REMARK 3 L33: 0.5286 L12: 1.1674 REMARK 3 L13: 0.0329 L23: -0.2361 REMARK 3 S TENSOR REMARK 3 S11: 0.0106 S12: 0.2488 S13: -0.2161 REMARK 3 S21: 0.0835 S22: 0.0629 S23: -0.2006 REMARK 3 S31: 0.0526 S32: 0.1651 S33: -0.0812 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 162 THROUGH 191 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.0415 -32.2774 -5.6117 REMARK 3 T TENSOR REMARK 3 T11: 0.4094 T22: 0.3265 REMARK 3 T33: 0.3800 T12: 0.0811 REMARK 3 T13: -0.0283 T23: -0.0124 REMARK 3 L TENSOR REMARK 3 L11: 1.8276 L22: 1.3091 REMARK 3 L33: 2.1532 L12: -0.7522 REMARK 3 L13: 1.2034 L23: -0.4038 REMARK 3 S TENSOR REMARK 3 S11: 0.1519 S12: -0.1616 S13: -0.4568 REMARK 3 S21: 0.2798 S22: 0.0749 S23: -0.2681 REMARK 3 S31: 0.5163 S32: 0.1238 S33: -0.1627 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 192 THROUGH 232 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.4741 -22.5961 -7.1266 REMARK 3 T TENSOR REMARK 3 T11: 0.2888 T22: 0.3345 REMARK 3 T33: 0.3151 T12: 0.0259 REMARK 3 T13: -0.0233 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.5098 L22: 1.2928 REMARK 3 L33: 0.6524 L12: -0.3741 REMARK 3 L13: -0.2554 L23: -0.1957 REMARK 3 S TENSOR REMARK 3 S11: -0.0606 S12: 0.0008 S13: -0.0223 REMARK 3 S21: 0.0844 S22: 0.0156 S23: -0.4445 REMARK 3 S31: 0.0904 S32: 0.2932 S33: 0.0431 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 233 THROUGH 260 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.7772 -7.2393 -18.9793 REMARK 3 T TENSOR REMARK 3 T11: 0.3579 T22: 0.2885 REMARK 3 T33: 0.3519 T12: -0.0203 REMARK 3 T13: -0.0414 T23: 0.0400 REMARK 3 L TENSOR REMARK 3 L11: 1.4317 L22: 1.2325 REMARK 3 L33: 1.1444 L12: 0.6269 REMARK 3 L13: -0.4597 L23: 0.0946 REMARK 3 S TENSOR REMARK 3 S11: -0.1394 S12: 0.0871 S13: 0.5361 REMARK 3 S21: -0.2297 S22: 0.1292 S23: 0.0294 REMARK 3 S31: -0.2781 S32: 0.0522 S33: 0.0546 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 261 THROUGH 295 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.1435 -8.2382 -27.7937 REMARK 3 T TENSOR REMARK 3 T11: 0.3240 T22: 0.3638 REMARK 3 T33: 0.3453 T12: -0.0259 REMARK 3 T13: -0.0354 T23: 0.0853 REMARK 3 L TENSOR REMARK 3 L11: 2.6521 L22: 0.8699 REMARK 3 L33: 1.9281 L12: 0.2388 REMARK 3 L13: -0.0034 L23: -0.4337 REMARK 3 S TENSOR REMARK 3 S11: -0.1779 S12: 0.6216 S13: 0.5534 REMARK 3 S21: -0.2007 S22: 0.0249 S23: 0.1074 REMARK 3 S31: -0.2326 S32: 0.2944 S33: 0.1154 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5Y7R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1300004662. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13C1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20780 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.960 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 1000, IMIDAZOLE, CALCIUM ACETATE, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.10350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.10350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.72050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.84450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.72050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.84450 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.10350 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.72050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 59.84450 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 33.10350 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.72050 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 59.84450 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 604 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 687 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 690 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 693 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 SER B 3 REMARK 465 LYS B 4 REMARK 465 ASP B 5 REMARK 465 HIS B 6 REMARK 465 VAL B 7 REMARK 465 LYS B 8 REMARK 465 HIS B 296 REMARK 465 ASP B 297 REMARK 465 ASP B 298 REMARK 465 GLU B 299 REMARK 465 ALA B 300 REMARK 465 GLU B 301 REMARK 465 PRO B 302 REMARK 465 LEU B 303 REMARK 465 CYS B 304 REMARK 465 ARG B 305 REMARK 465 GLU B 306 REMARK 465 THR B 307 REMARK 465 ILE B 308 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 136 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 81 -169.37 -112.11 REMARK 500 GLU B 92 -62.55 -99.69 REMARK 500 MET B 137 -7.70 82.40 REMARK 500 SER B 140 -46.73 -134.66 REMARK 500 ARG B 271 30.59 -99.26 REMARK 500 ASP B 272 130.01 -37.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 693 DISTANCE = 6.08 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 134 NE2 REMARK 620 2 ASP B 136 OD1 90.1 REMARK 620 3 HIS B 211 NE2 90.2 89.4 REMARK 620 4 AKG B 402 O5 90.5 179.4 90.3 REMARK 620 5 AKG B 402 O1 90.5 93.6 176.9 86.7 REMARK 620 6 HOH B 584 O 179.7 90.0 89.5 89.4 89.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AKG B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 58K B 403 DBREF 5Y7R B 1 308 UNP Q5AR53 ASQJ_EMENI 109 416 SEQRES 1 B 308 MET THR SER LYS ASP HIS VAL LYS SER GLN ILE PRO ARG SEQRES 2 B 308 LEU SER ALA ILE ASN ASP LEU HIS LYS ILE TRP PRO THR SEQRES 3 B 308 VAL GLU GLU HIS GLY ALA ALA ILE ILE GLU SER PHE LEU SEQRES 4 B 308 SER LEU ASP ILE VAL ARG ARG LEU ASN GLU GLU VAL ASP SEQRES 5 B 308 PRO PHE VAL LYS ILE GLU PRO ILE PRO ALA ALA LYS THR SEQRES 6 B 308 LYS ASP HIS PRO ASN HIS VAL LEU SER THR THR THR ARG SEQRES 7 B 308 LEU VAL ASN VAL LEU ALA PRO ILE SER LYS ALA TYR ARG SEQRES 8 B 308 GLU ASP VAL LEU ASN SER LYS VAL LEU HIS ARG ILE CYS SEQRES 9 B 308 SER ASP ALA PHE HIS VAL TYR GLY ASP TYR TRP VAL LEU SEQRES 10 B 308 MET GLY ALA VAL MET GLU LEU ALA PRO SER ASN PRO ALA SEQRES 11 B 308 GLN PRO LEU HIS ARG ASP MET ARG PHE SER HIS PRO ILE SEQRES 12 B 308 VAL GLU TYR LEU LYS PRO ASP ALA PRO ALA THR SER ILE SEQRES 13 B 308 ASN PHE LEU VAL ALA LEU SER PRO PHE THR ALA GLU ASN SEQRES 14 B 308 GLY ALA THR HIS VAL ILE LEU GLY SER HIS LYS TRP GLN SEQRES 15 B 308 ASN LEU SER ASN VAL SER MET ASP ALA THR VAL ARG ALA SEQRES 16 B 308 LEU MET ASN PRO GLY ASP ALA LEU LEU ILE THR ASP SER SEQRES 17 B 308 THR ILE HIS CYS GLY GLY ALA GLU THR THR GLY THR GLU SEQRES 18 B 308 THR ARG ARG LEU LEU THR ILE THR MET GLY ILE SER GLN SEQRES 19 B 308 LEU THR PRO LEU GLU SER ASN LEU ALA VAL PRO ARG PRO SEQRES 20 B 308 VAL ILE GLU SER LEU THR PRO LEU ALA GLN ARG LEU LEU SEQRES 21 B 308 GLY TRP ALA SER GLN ARG SER ALA ALA PRO ARG ASP ILE SEQRES 22 B 308 GLY LEU LEU THR ILE ARG GLY ASN SER ILE GLU LYS THR SEQRES 23 B 308 MET ASN LEU LYS ALA GLU GLN PRO LEU HIS ASP ASP GLU SEQRES 24 B 308 ALA GLU PRO LEU CYS ARG GLU THR ILE HET FE B 401 1 HET AKG B 402 14 HET 58K B 403 37 HETNAM FE FE (III) ION HETNAM AKG 2-OXOGLUTARIC ACID HETNAM 58K CYCLOPEPTIN FORMUL 2 FE FE 3+ FORMUL 3 AKG C5 H6 O5 FORMUL 4 58K C17 H16 N2 O2 FORMUL 5 HOH *193(H2 O) HELIX 1 AA1 ASP B 19 HIS B 21 5 3 HELIX 2 AA2 LYS B 22 GLY B 31 1 10 HELIX 3 AA3 SER B 40 GLU B 58 1 19 HELIX 4 AA4 SER B 87 ASP B 93 1 7 HELIX 5 AA5 SER B 97 HIS B 109 1 13 HELIX 6 AA6 HIS B 141 LEU B 147 5 7 HELIX 7 AA7 GLY B 177 TRP B 181 5 5 HELIX 8 AA8 SER B 188 THR B 192 5 5 HELIX 9 AA9 PRO B 245 SER B 251 1 7 HELIX 10 AB1 THR B 253 LEU B 260 1 8 HELIX 11 AB2 SER B 282 ASN B 288 1 7 SHEET 1 AA1 7 ARG B 13 SER B 15 0 SHEET 2 AA1 7 ALA B 32 GLU B 36 1 O GLU B 36 N LEU B 14 SHEET 3 AA1 7 ALA B 202 THR B 206 -1 O ALA B 202 N ILE B 35 SHEET 4 AA1 7 SER B 155 ALA B 161 -1 N LEU B 159 O LEU B 203 SHEET 5 AA1 7 ARG B 223 ILE B 232 -1 O LEU B 226 N VAL B 160 SHEET 6 AA1 7 TYR B 114 LEU B 124 -1 N TRP B 115 O GLY B 231 SHEET 7 AA1 7 THR B 77 VAL B 80 -1 N VAL B 80 O VAL B 121 SHEET 1 AA2 3 VAL B 193 ARG B 194 0 SHEET 2 AA2 3 HIS B 173 VAL B 174 -1 N VAL B 174 O VAL B 193 SHEET 3 AA2 3 HIS B 211 CYS B 212 -1 O CYS B 212 N HIS B 173 LINK NE2 HIS B 134 FE FE B 401 1555 1555 2.24 LINK OD1 ASP B 136 FE FE B 401 1555 1555 2.16 LINK NE2 HIS B 211 FE FE B 401 1555 1555 2.21 LINK FE FE B 401 O5 AKG B 402 1555 1555 2.22 LINK FE FE B 401 O1 AKG B 402 1555 1555 2.00 LINK FE FE B 401 O HOH B 584 1555 1555 1.92 SITE 1 AC1 5 HIS B 134 ASP B 136 HIS B 211 AKG B 402 SITE 2 AC1 5 HOH B 584 SITE 1 AC2 15 MET B 122 GLN B 131 HIS B 134 ASP B 136 SITE 2 AC2 15 LEU B 159 THR B 172 HIS B 211 GLY B 213 SITE 3 AC2 15 ARG B 223 LEU B 225 FE B 401 58K B 403 SITE 4 AC2 15 HOH B 533 HOH B 584 HOH B 669 SITE 1 AC3 16 ASN B 70 VAL B 72 LEU B 79 MET B 118 SITE 2 AC3 16 GLN B 131 PRO B 132 HIS B 134 ASP B 136 SITE 3 AC3 16 MET B 137 PHE B 139 THR B 227 AKG B 402 SITE 4 AC3 16 HOH B 555 HOH B 563 HOH B 615 HOH B 629 CRYST1 73.441 119.689 66.207 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013616 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008355 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015104 0.00000