HEADER TRANSPORT PROTEIN 18-AUG-17 5Y83 TITLE CRYSTAL STRUCTURE OF YIDC FROM THERMOTOGA MARITIMA COMPND MOL_ID: 1; COMPND 2 MOLECULE: MEMBRANE PROTEIN INSERTASE YIDC; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FOLDASE YIDC,MEMBRANE INTEGRASE YIDC,MEMBRANE PROTEIN YIDC; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA (STRAIN ATCC 43589 / MSB8 / SOURCE 3 DSM 3109 / JCM 10099); SOURCE 4 ORGANISM_TAXID: 243274; SOURCE 5 STRAIN: ATCC 43589 / MSB8 / DSM 3109 / JCM 10099; SOURCE 6 GENE: YIDC, TM_1461; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS YIDC, ALB3, OXA1, SEC, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.HUANG,Y.XIN REVDAT 2 27-MAR-24 5Y83 1 REMARK REVDAT 1 11-JUL-18 5Y83 0 JRNL AUTH Y.XIN,Y.ZHAO,J.ZHENG,H.ZHOU,X.C.ZHANG,C.TIAN,Y.HUANG JRNL TITL STRUCTURE OF YIDC FROM THERMOTOGA MARITIMA AND ITS JRNL TITL 2 IMPLICATIONS FOR YIDC-MEDIATED MEMBRANE PROTEIN INSERTION JRNL REF FASEB J. V. 32 2411 2018 JRNL REFN ESSN 1530-6860 JRNL PMID 29295859 JRNL DOI 10.1096/FJ.201700893RR REMARK 2 REMARK 2 RESOLUTION. 3.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.040 REMARK 3 COMPLETENESS FOR RANGE (%) : 75.2 REMARK 3 NUMBER OF REFLECTIONS : 10459 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.266 REMARK 3 R VALUE (WORKING SET) : 0.264 REMARK 3 FREE R VALUE : 0.312 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.160 REMARK 3 FREE R VALUE TEST SET COUNT : 729 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2679 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.590 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5Y83 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1300004827. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97920 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10459 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.30 REMARK 200 R MERGE FOR SHELL (I) : 0.90200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 81.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES (PH 7.5), 20% PEG1500(W/V), REMARK 280 EVAPORATION, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.87250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.85300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.80000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.85300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.87250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.80000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 LEU A 3 REMARK 465 ARG A 4 REMARK 465 LYS A 5 REMARK 465 VAL A 6 REMARK 465 VAL A 7 REMARK 465 ALA A 8 REMARK 465 ILE A 9 REMARK 465 LEU A 10 REMARK 465 LEU A 11 REMARK 465 ALA A 12 REMARK 465 ILE A 13 REMARK 465 LEU A 14 REMARK 465 PRO A 15 REMARK 465 ILE A 16 REMARK 465 PHE A 17 REMARK 465 LEU A 18 REMARK 465 PHE A 19 REMARK 465 ALA A 20 REMARK 465 VAL A 21 REMARK 465 THR A 271 REMARK 465 LYS A 272 REMARK 465 SER A 273 REMARK 465 LEU A 274 REMARK 465 ILE A 275 REMARK 465 ASN A 276 REMARK 465 MET A 277 REMARK 465 ARG A 278 REMARK 465 LYS A 279 REMARK 465 LEU A 280 REMARK 465 GLN A 281 REMARK 465 PRO A 282 REMARK 465 GLN A 283 REMARK 465 ILE A 284 REMARK 465 GLU A 285 REMARK 465 ALA A 286 REMARK 465 ILE A 287 REMARK 465 LYS A 288 REMARK 465 LYS A 289 REMARK 465 LYS A 290 REMARK 465 TYR A 291 REMARK 465 LYS A 292 REMARK 465 ASP A 293 REMARK 465 PRO A 294 REMARK 465 THR A 295 REMARK 465 LYS A 296 REMARK 465 GLN A 297 REMARK 465 GLN A 298 REMARK 465 GLU A 299 REMARK 465 ALA A 300 REMARK 465 LEU A 301 REMARK 465 LEU A 302 REMARK 465 LYS A 303 REMARK 465 LEU A 304 REMARK 465 TYR A 305 REMARK 465 ARG A 306 REMARK 465 GLU A 307 REMARK 465 ALA A 308 REMARK 465 GLY A 309 REMARK 465 VAL A 310 REMARK 465 ASN A 311 REMARK 465 PRO A 312 REMARK 465 ALA A 313 REMARK 465 SER A 314 REMARK 465 GLY A 315 REMARK 465 THR A 375 REMARK 465 LEU A 376 REMARK 465 LEU A 377 REMARK 465 THR A 378 REMARK 465 SER A 379 REMARK 465 GLN A 380 REMARK 465 ASP A 381 REMARK 465 ALA A 382 REMARK 465 ARG A 383 REMARK 465 THR A 384 REMARK 465 ALA A 385 REMARK 465 TRP A 386 REMARK 465 GLN A 387 REMARK 465 GLY A 388 REMARK 465 TYR A 423 REMARK 465 THR A 424 REMARK 465 TYR A 425 REMARK 465 LYS A 426 REMARK 465 ARG A 427 REMARK 465 TYR A 428 REMARK 465 LYS A 429 REMARK 465 ILE A 430 REMARK 465 LYS A 431 REMARK 465 GLY A 432 REMARK 465 LEU A 433 REMARK 465 THR A 434 REMARK 465 THR A 435 REMARK 465 ARG A 436 REMARK 465 GLU A 437 REMARK 465 LEU A 438 REMARK 465 LEU A 439 REMARK 465 GLY A 440 REMARK 465 LEU A 441 REMARK 465 PRO A 442 REMARK 465 LYS A 443 REMARK 465 LYS A 444 REMARK 465 ALA A 445 REMARK 465 HIS A 446 REMARK 465 HIS A 447 REMARK 465 HIS A 448 REMARK 465 HIS A 449 REMARK 465 HIS A 450 REMARK 465 HIS A 451 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 22 CG CD OE1 OE2 REMARK 470 PRO A 23 CG CD REMARK 470 GLU A 86 CG CD OE1 OE2 REMARK 470 LYS A 94 CG CD CE NZ REMARK 470 ASP A 101 CG OD1 OD2 REMARK 470 LEU A 244 CG CD1 CD2 REMARK 470 THR A 245 OG1 CG2 REMARK 470 LYS A 246 CG CD CE NZ REMARK 470 TRP A 250 CD1 CD2 NE1 CE2 CE3 CZ2 CZ3 REMARK 470 TRP A 250 CH2 REMARK 470 HIS A 268 ND1 CD2 CE1 NE2 REMARK 470 GLN A 270 CG CD OE1 NE2 REMARK 470 CYS A 316 SG REMARK 470 LEU A 319 CG CD1 CD2 REMARK 470 LEU A 329 CD1 CD2 REMARK 470 VAL A 332 CG1 CG2 REMARK 470 TYR A 335 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 TYR A 336 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 TYR A 342 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER A 343 OG REMARK 470 SER A 345 OG REMARK 470 PHE A 346 CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 347 CD1 CD2 REMARK 470 ILE A 348 CG2 CD1 REMARK 470 TRP A 349 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 349 CZ3 CH2 REMARK 470 ASN A 359 OD1 ND2 REMARK 470 ASN A 360 OD1 ND2 REMARK 470 LEU A 362 CD1 CD2 REMARK 470 PHE A 363 CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR A 373 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ILE A 390 CG2 CD1 REMARK 470 PHE A 395 CD1 CD2 CE1 CE2 CZ REMARK 470 PHE A 407 CD1 CD2 CE1 CE2 CZ REMARK 470 THR A 412 CG2 REMARK 470 THR A 414 CG2 REMARK 470 LEU A 415 CD1 CD2 REMARK 470 ILE A 416 CG2 CD1 REMARK 470 GLN A 417 CG CD OE1 NE2 REMARK 470 LEU A 418 CD1 CD2 REMARK 470 VAL A 420 CG1 REMARK 470 TYR A 422 CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE LYS A 198 CB TYR A 336 1.69 REMARK 500 NZ LYS A 198 CB TYR A 336 1.76 REMARK 500 O ASN A 155 CD1 TYR A 156 1.78 REMARK 500 CZ3 TRP A 330 CG PRO A 403 1.83 REMARK 500 CH2 TRP A 330 CD PRO A 403 1.87 REMARK 500 CH2 TRP A 330 CG PRO A 403 1.93 REMARK 500 OD1 ASN A 155 CA GLY A 175 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 23 N - CA - CB ANGL. DEV. = 8.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 76 50.89 -92.43 REMARK 500 GLU A 77 82.16 70.08 REMARK 500 SER A 96 26.26 -73.50 REMARK 500 SER A 100 -52.08 -120.28 REMARK 500 ASP A 101 -74.46 -101.03 REMARK 500 TYR A 152 51.29 -113.08 REMARK 500 LEU A 153 177.00 -54.37 REMARK 500 TYR A 156 146.23 -175.89 REMARK 500 LEU A 176 -19.48 76.55 REMARK 500 PRO A 221 109.12 -42.01 REMARK 500 ASN A 224 -72.48 -127.93 REMARK 500 LYS A 225 77.68 56.85 REMARK 500 ASP A 228 -86.46 -124.59 REMARK 500 LYS A 246 -172.40 36.00 REMARK 500 ASN A 247 -157.30 -74.42 REMARK 500 ARG A 334 88.81 168.54 REMARK 500 TYR A 335 173.69 65.67 REMARK 500 TYR A 336 52.78 -67.86 REMARK 500 VAL A 337 62.91 -155.03 REMARK 500 SER A 343 -7.34 73.99 REMARK 500 ILE A 348 -119.34 55.13 REMARK 500 LEU A 352 -18.65 82.50 REMARK 500 SER A 358 -9.76 -58.45 REMARK 500 TYR A 373 -154.95 -72.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 68 ASN A 69 131.51 REMARK 500 GLU A 174 GLY A 175 -149.40 REMARK 500 REMARK 500 REMARK: NULL DBREF 5Y83 A 1 445 UNP Q9X1H2 YIDC_THEMA 1 445 SEQADV 5Y83 VAL A 24 UNP Q9X1H2 ILE 24 ENGINEERED MUTATION SEQADV 5Y83 VAL A 25 UNP Q9X1H2 LYS 25 ENGINEERED MUTATION SEQADV 5Y83 HIS A 446 UNP Q9X1H2 EXPRESSION TAG SEQADV 5Y83 HIS A 447 UNP Q9X1H2 EXPRESSION TAG SEQADV 5Y83 HIS A 448 UNP Q9X1H2 EXPRESSION TAG SEQADV 5Y83 HIS A 449 UNP Q9X1H2 EXPRESSION TAG SEQADV 5Y83 HIS A 450 UNP Q9X1H2 EXPRESSION TAG SEQADV 5Y83 HIS A 451 UNP Q9X1H2 EXPRESSION TAG SEQRES 1 A 451 MET VAL LEU ARG LYS VAL VAL ALA ILE LEU LEU ALA ILE SEQRES 2 A 451 LEU PRO ILE PHE LEU PHE ALA VAL GLU PRO VAL VAL VAL SEQRES 3 A 451 VAL ARG SER GLU LYS GLU ILE VAL VAL LEU THR ARG PHE SEQRES 4 A 451 GLU GLU TYR HIS PHE ASP LEU GLU LYS GLY ILE LEU LYS SEQRES 5 A 451 ASP PHE TYR THR LEU VAL ASP GLY ARG LYS HIS VAL PHE SEQRES 6 A 451 THR TYR GLY ASN ASP GLY PHE ASP VAL LEU ASP GLU GLY SEQRES 7 A 451 THR PRO LEU THR VAL ILE GLU GLU PRO ILE VAL THR GLY SEQRES 8 A 451 VAL GLY LYS VAL SER GLU GLY PHE SER ASP GLU VAL SER SEQRES 9 A 451 ILE VAL TYR ASN TYR GLY TYR VAL LYS LYS ILE PHE THR SEQRES 10 A 451 ILE LYS ASN ASN GLU ASN TYR THR PHE PHE VAL ASP ILE SEQRES 11 A 451 GLU SER SER LYS PRO VAL ASP VAL THR VAL PRO ARG VAL SEQRES 12 A 451 SER VAL ASP THR SER THR ASP ARG TYR LEU GLU ASN TYR SEQRES 13 A 451 PHE ALA SER PHE ASN PRO LYS THR ARG THR LEU VAL LEU SEQRES 14 A 451 LEU LYS HIS ASP GLU GLY LEU LEU PHE GLU GLY THR LEU SEQRES 15 A 451 LYS VAL ASN GLY GLN LYS ARG PHE ILE VAL PHE MET GLY SEQRES 16 A 451 PRO ASN LYS ARG THR LEU ILE LYS LYS ALA PHE PRO GLU SEQRES 17 A 451 ASP TYR ASP VAL LEU ILE LYS ALA LEU VAL ASN ILE PRO SEQRES 18 A 451 GLY PHE ASN LYS TRP TYR ASP SER VAL PHE TYR GLY LEU SEQRES 19 A 451 VAL TRP PHE PHE TRP TRP LEU LYS ASP LEU THR LYS ASN SEQRES 20 A 451 PHE GLY TRP ALA ILE MET LEU PHE THR LEU ILE VAL ARG SEQRES 21 A 451 LEU ILE LEU TYR PRO LEU TYR HIS ALA GLN THR LYS SER SEQRES 22 A 451 LEU ILE ASN MET ARG LYS LEU GLN PRO GLN ILE GLU ALA SEQRES 23 A 451 ILE LYS LYS LYS TYR LYS ASP PRO THR LYS GLN GLN GLU SEQRES 24 A 451 ALA LEU LEU LYS LEU TYR ARG GLU ALA GLY VAL ASN PRO SEQRES 25 A 451 ALA SER GLY CYS LEU MET LEU LEU ILE GLN LEU PRO ILE SEQRES 26 A 451 PHE MET LEU LEU TRP SER VAL ILE ARG TYR TYR VAL GLU SEQRES 27 A 451 GLU PHE ALA TYR SER GLY SER PHE LEU ILE TRP LYS ASP SEQRES 28 A 451 LEU SER ALA GLY GLY PHE SER ASN ASN TRP LEU PHE LEU SEQRES 29 A 451 VAL ILE THR ILE VAL ALA SER TYR TYR THR THR LEU LEU SEQRES 30 A 451 THR SER GLN ASP ALA ARG THR ALA TRP GLN GLY ILE ILE SEQRES 31 A 451 MET SER VAL ILE PHE PRO PHE LEU PHE VAL GLY LEU PRO SEQRES 32 A 451 SER GLY LEU PHE LEU TYR TYR ALA THR ASN THR LEU ILE SEQRES 33 A 451 GLN LEU ALA VAL THR TYR TYR THR TYR LYS ARG TYR LYS SEQRES 34 A 451 ILE LYS GLY LEU THR THR ARG GLU LEU LEU GLY LEU PRO SEQRES 35 A 451 LYS LYS ALA HIS HIS HIS HIS HIS HIS HELIX 1 AA1 ASP A 146 SER A 148 5 3 HELIX 2 AA2 LYS A 198 PHE A 206 1 9 HELIX 3 AA3 ASP A 209 ASN A 219 1 11 HELIX 4 AA4 GLY A 233 ASP A 243 1 11 HELIX 5 AA5 ILE A 252 ALA A 269 1 18 HELIX 6 AA6 LEU A 317 ILE A 321 1 5 HELIX 7 AA7 ILE A 321 ARG A 334 1 14 HELIX 8 AA8 VAL A 337 ALA A 341 5 5 HELIX 9 AA9 PHE A 357 TYR A 373 1 17 HELIX 10 AB1 ILE A 390 GLY A 401 1 12 HELIX 11 AB2 PRO A 403 TYR A 422 1 20 SHEET 1 AA1 5 VAL A 25 ARG A 28 0 SHEET 2 AA1 5 GLU A 32 LEU A 36 -1 O VAL A 34 N VAL A 27 SHEET 3 AA1 5 GLU A 40 ASP A 45 -1 O PHE A 44 N ILE A 33 SHEET 4 AA1 5 LEU A 51 THR A 56 -1 O TYR A 55 N GLU A 41 SHEET 5 AA1 5 LYS A 62 THR A 66 -1 O LYS A 62 N THR A 56 SHEET 1 AA2 5 VAL A 74 LEU A 75 0 SHEET 2 AA2 5 THR A 125 VAL A 138 -1 O ASP A 137 N LEU A 75 SHEET 3 AA2 5 VAL A 112 LYS A 119 -1 N ILE A 115 O ASP A 129 SHEET 4 AA2 5 GLU A 102 ASN A 108 -1 N TYR A 107 O LYS A 114 SHEET 5 AA2 5 ILE A 88 GLY A 91 -1 N ILE A 88 O VAL A 106 SHEET 1 AA3 6 VAL A 74 LEU A 75 0 SHEET 2 AA3 6 THR A 125 VAL A 138 -1 O ASP A 137 N LEU A 75 SHEET 3 AA3 6 LEU A 182 PRO A 196 -1 O LYS A 188 N ILE A 130 SHEET 4 AA3 6 THR A 166 LYS A 171 -1 N LEU A 169 O PHE A 193 SHEET 5 AA3 6 PHE A 157 ASN A 161 -1 N SER A 159 O VAL A 168 SHEET 6 AA3 6 ASP A 150 ARG A 151 -1 N ARG A 151 O ALA A 158 CISPEP 1 ASP A 243 LEU A 244 0 11.47 CISPEP 2 ARG A 334 TYR A 335 0 0.05 CISPEP 3 ALA A 354 GLY A 355 0 -15.89 CRYST1 75.745 103.600 129.706 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013202 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009653 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007710 0.00000