data_5Y8B # _entry.id 5Y8B # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5Y8B pdb_00005y8b 10.2210/pdb5y8b/pdb WWPDB D_1300004754 ? ? # _pdbx_database_PDB_obs_spr.id SPRSDE _pdbx_database_PDB_obs_spr.date 2017-10-11 _pdbx_database_PDB_obs_spr.pdb_id 5Y8B _pdbx_database_PDB_obs_spr.replace_pdb_id 5GJ2 _pdbx_database_PDB_obs_spr.details ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB 'same protein in complex with hemes' 5GJ3 unspecified PDB 'homologous protein BhuT in apo form' 5GIZ unspecified PDB 'homologous protein BhuT in complex with one heme' 5Y89 unspecified PDB 'homologous protein BhuT in complex with two hemes' 5Y8A unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5Y8B _pdbx_database_status.recvd_initial_deposition_date 2017-08-20 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Rahman, M.M.' 1 ? 'Naoe, Y.' 2 ? 'Nakamura, N.' 3 ? 'Doi, A.' 4 ? 'Shiro, Y.' 5 ? 'Sugimoto, H.' 6 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Proteins _citation.journal_id_ASTM PSFGEY _citation.journal_id_CSD 0867 _citation.journal_id_ISSN 1097-0134 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 85 _citation.language ? _citation.page_first 2217 _citation.page_last 2230 _citation.title 'Structural basis for binding and transfer of heme in bacterial heme-acquisition systems' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/prot.25386 _citation.pdbx_database_id_PubMed 28913898 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Naoe, Y.' 1 ? primary 'Nakamura, N.' 2 ? primary 'Rahman, M.M.' 3 ? primary 'Tosha, T.' 4 ? primary 'Nagatoishi, S.' 5 ? primary 'Tsumoto, K.' 6 ? primary 'Shiro, Y.' 7 ? primary 'Sugimoto, H.' 8 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 5Y8B _cell.details ? _cell.formula_units_Z ? _cell.length_a 71.039 _cell.length_a_esd ? _cell.length_b 71.039 _cell.length_b_esd ? _cell.length_c 78.206 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Y8B _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Periplasmic binding protein' 28246.318 1 ? ? 'heme binding protein, UNp residues 96-360' ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 3 water nat water 18.015 77 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GPLGSERIVSLNGDITEIIFALGMGEYVVGVDSSATYPPERTKMLPNIGYQRRLSAEGILSLNPTLVIGDEAAGPPETLA QIRAAGVPLAITADPPSLDAPQQKIRFVAQALGIPQRGERLAAQVEAEIAAARDLARRITNPPHVLFLYLRGTDVQQVAG RNTAVDVMIAAAGGINAAADAGIVEFKPLSPEVVIAAQPDVLLVLDKGLESVGGVDGLLKIPGLADTPAGRQRRIIALDD LYLLGMGPRTGQALTDLTIAFYDAAQGSRP ; _entity_poly.pdbx_seq_one_letter_code_can ;GPLGSERIVSLNGDITEIIFALGMGEYVVGVDSSATYPPERTKMLPNIGYQRRLSAEGILSLNPTLVIGDEAAGPPETLA QIRAAGVPLAITADPPSLDAPQQKIRFVAQALGIPQRGERLAAQVEAEIAAARDLARRITNPPHVLFLYLRGTDVQQVAG RNTAVDVMIAAAGGINAAADAGIVEFKPLSPEVVIAAQPDVLLVLDKGLESVGGVDGLLKIPGLADTPAGRQRRIIALDD LYLLGMGPRTGQALTDLTIAFYDAAQGSRP ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 LEU n 1 4 GLY n 1 5 SER n 1 6 GLU n 1 7 ARG n 1 8 ILE n 1 9 VAL n 1 10 SER n 1 11 LEU n 1 12 ASN n 1 13 GLY n 1 14 ASP n 1 15 ILE n 1 16 THR n 1 17 GLU n 1 18 ILE n 1 19 ILE n 1 20 PHE n 1 21 ALA n 1 22 LEU n 1 23 GLY n 1 24 MET n 1 25 GLY n 1 26 GLU n 1 27 TYR n 1 28 VAL n 1 29 VAL n 1 30 GLY n 1 31 VAL n 1 32 ASP n 1 33 SER n 1 34 SER n 1 35 ALA n 1 36 THR n 1 37 TYR n 1 38 PRO n 1 39 PRO n 1 40 GLU n 1 41 ARG n 1 42 THR n 1 43 LYS n 1 44 MET n 1 45 LEU n 1 46 PRO n 1 47 ASN n 1 48 ILE n 1 49 GLY n 1 50 TYR n 1 51 GLN n 1 52 ARG n 1 53 ARG n 1 54 LEU n 1 55 SER n 1 56 ALA n 1 57 GLU n 1 58 GLY n 1 59 ILE n 1 60 LEU n 1 61 SER n 1 62 LEU n 1 63 ASN n 1 64 PRO n 1 65 THR n 1 66 LEU n 1 67 VAL n 1 68 ILE n 1 69 GLY n 1 70 ASP n 1 71 GLU n 1 72 ALA n 1 73 ALA n 1 74 GLY n 1 75 PRO n 1 76 PRO n 1 77 GLU n 1 78 THR n 1 79 LEU n 1 80 ALA n 1 81 GLN n 1 82 ILE n 1 83 ARG n 1 84 ALA n 1 85 ALA n 1 86 GLY n 1 87 VAL n 1 88 PRO n 1 89 LEU n 1 90 ALA n 1 91 ILE n 1 92 THR n 1 93 ALA n 1 94 ASP n 1 95 PRO n 1 96 PRO n 1 97 SER n 1 98 LEU n 1 99 ASP n 1 100 ALA n 1 101 PRO n 1 102 GLN n 1 103 GLN n 1 104 LYS n 1 105 ILE n 1 106 ARG n 1 107 PHE n 1 108 VAL n 1 109 ALA n 1 110 GLN n 1 111 ALA n 1 112 LEU n 1 113 GLY n 1 114 ILE n 1 115 PRO n 1 116 GLN n 1 117 ARG n 1 118 GLY n 1 119 GLU n 1 120 ARG n 1 121 LEU n 1 122 ALA n 1 123 ALA n 1 124 GLN n 1 125 VAL n 1 126 GLU n 1 127 ALA n 1 128 GLU n 1 129 ILE n 1 130 ALA n 1 131 ALA n 1 132 ALA n 1 133 ARG n 1 134 ASP n 1 135 LEU n 1 136 ALA n 1 137 ARG n 1 138 ARG n 1 139 ILE n 1 140 THR n 1 141 ASN n 1 142 PRO n 1 143 PRO n 1 144 HIS n 1 145 VAL n 1 146 LEU n 1 147 PHE n 1 148 LEU n 1 149 TYR n 1 150 LEU n 1 151 ARG n 1 152 GLY n 1 153 THR n 1 154 ASP n 1 155 VAL n 1 156 GLN n 1 157 GLN n 1 158 VAL n 1 159 ALA n 1 160 GLY n 1 161 ARG n 1 162 ASN n 1 163 THR n 1 164 ALA n 1 165 VAL n 1 166 ASP n 1 167 VAL n 1 168 MET n 1 169 ILE n 1 170 ALA n 1 171 ALA n 1 172 ALA n 1 173 GLY n 1 174 GLY n 1 175 ILE n 1 176 ASN n 1 177 ALA n 1 178 ALA n 1 179 ALA n 1 180 ASP n 1 181 ALA n 1 182 GLY n 1 183 ILE n 1 184 VAL n 1 185 GLU n 1 186 PHE n 1 187 LYS n 1 188 PRO n 1 189 LEU n 1 190 SER n 1 191 PRO n 1 192 GLU n 1 193 VAL n 1 194 VAL n 1 195 ILE n 1 196 ALA n 1 197 ALA n 1 198 GLN n 1 199 PRO n 1 200 ASP n 1 201 VAL n 1 202 LEU n 1 203 LEU n 1 204 VAL n 1 205 LEU n 1 206 ASP n 1 207 LYS n 1 208 GLY n 1 209 LEU n 1 210 GLU n 1 211 SER n 1 212 VAL n 1 213 GLY n 1 214 GLY n 1 215 VAL n 1 216 ASP n 1 217 GLY n 1 218 LEU n 1 219 LEU n 1 220 LYS n 1 221 ILE n 1 222 PRO n 1 223 GLY n 1 224 LEU n 1 225 ALA n 1 226 ASP n 1 227 THR n 1 228 PRO n 1 229 ALA n 1 230 GLY n 1 231 ARG n 1 232 GLN n 1 233 ARG n 1 234 ARG n 1 235 ILE n 1 236 ILE n 1 237 ALA n 1 238 LEU n 1 239 ASP n 1 240 ASP n 1 241 LEU n 1 242 TYR n 1 243 LEU n 1 244 LEU n 1 245 GLY n 1 246 MET n 1 247 GLY n 1 248 PRO n 1 249 ARG n 1 250 THR n 1 251 GLY n 1 252 GLN n 1 253 ALA n 1 254 LEU n 1 255 THR n 1 256 ASP n 1 257 LEU n 1 258 THR n 1 259 ILE n 1 260 ALA n 1 261 PHE n 1 262 TYR n 1 263 ASP n 1 264 ALA n 1 265 ALA n 1 266 GLN n 1 267 GLY n 1 268 SER n 1 269 ARG n 1 270 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 270 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene RoseRS_3565 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain RS-1 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Roseiflexus sp. (strain RS-1)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 357808 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Rosetta2(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pGEX-6P-1 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A5UZ69_ROSS1 _struct_ref.pdbx_db_accession A5UZ69 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ERIVSLNGDITEIIFALGMGEYVVGVDSSATYPPERTKMLPNIGYQRRLSAEGILSLNPTLVIGDEAAGPPETLAQIRAA GVPLAITADPPSLDAPQQKIRFVAQALGIPQRGERLAAQVEAEIAAARDLARRITNPPHVLFLYLRGTDVQQVAGRNTAV DVMIAAAGGINAAADAGIVEFKPLSPEVVIAAQPDVLLVLDKGLESVGGVDGLLKIPGLADTPAGRQRRIIALDDLYLLG MGPRTGQALTDLTIAFYDAAQGSRP ; _struct_ref.pdbx_align_begin 96 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5Y8B _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 6 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 270 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A5UZ69 _struct_ref_seq.db_align_beg 96 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 360 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 96 _struct_ref_seq.pdbx_auth_seq_align_end 360 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5Y8B GLY A 1 ? UNP A5UZ69 ? ? 'expression tag' 91 1 1 5Y8B PRO A 2 ? UNP A5UZ69 ? ? 'expression tag' 92 2 1 5Y8B LEU A 3 ? UNP A5UZ69 ? ? 'expression tag' 93 3 1 5Y8B GLY A 4 ? UNP A5UZ69 ? ? 'expression tag' 94 4 1 5Y8B SER A 5 ? UNP A5UZ69 ? ? 'expression tag' 95 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5Y8B _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.02 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 39.01 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity 0.587 _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '9% PEG 400, 0.2 M MgCl2, 50 mM glycine' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details mirrors _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RAYONIX MX225-HS' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-06-19 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.00 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SPRING-8 BEAMLINE BL32XU' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.00 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL32XU _diffrn_source.pdbx_synchrotron_site SPring-8 # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5Y8B _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.400 _reflns.d_resolution_low 50.010 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 9202 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.300 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 12.600 _reflns.pdbx_Rmerge_I_obs 0.098 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 8.700 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.956 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.102 _reflns.pdbx_Rpim_I_all 0.028 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 2.400 2.440 ? ? ? ? ? ? 450 94.500 ? ? ? ? 0.501 ? ? ? ? ? ? ? ? 7.000 ? 0.940 ? ? 0.540 0.193 ? 1 1 0.897 ? 2.440 2.490 ? ? ? ? ? ? 425 99.100 ? ? ? ? 0.485 ? ? ? ? ? ? ? ? 8.900 ? 0.916 ? ? 0.515 0.169 ? 2 1 0.866 ? 2.490 2.530 ? ? ? ? ? ? 457 98.300 ? ? ? ? 0.425 ? ? ? ? ? ? ? ? 10.100 ? 0.922 ? ? 0.447 0.138 ? 3 1 0.933 ? 2.530 2.590 ? ? ? ? ? ? 434 100.000 ? ? ? ? 0.386 ? ? ? ? ? ? ? ? 11.600 ? 0.901 ? ? 0.404 0.117 ? 4 1 0.957 ? 2.590 2.640 ? ? ? ? ? ? 471 98.900 ? ? ? ? 0.363 ? ? ? ? ? ? ? ? 12.600 ? 0.953 ? ? 0.378 0.105 ? 5 1 0.966 ? 2.640 2.700 ? ? ? ? ? ? 450 98.900 ? ? ? ? 0.346 ? ? ? ? ? ? ? ? 13.200 ? 0.968 ? ? 0.360 0.098 ? 6 1 0.975 ? 2.700 2.770 ? ? ? ? ? ? 440 100.000 ? ? ? ? 0.288 ? ? ? ? ? ? ? ? 13.500 ? 0.902 ? ? 0.299 0.080 ? 7 1 0.984 ? 2.770 2.850 ? ? ? ? ? ? 471 99.400 ? ? ? ? 0.259 ? ? ? ? ? ? ? ? 13.700 ? 0.925 ? ? 0.269 0.072 ? 8 1 0.985 ? 2.850 2.930 ? ? ? ? ? ? 441 99.300 ? ? ? ? 0.229 ? ? ? ? ? ? ? ? 13.600 ? 0.917 ? ? 0.238 0.064 ? 9 1 0.988 ? 2.930 3.020 ? ? ? ? ? ? 448 99.300 ? ? ? ? 0.186 ? ? ? ? ? ? ? ? 13.700 ? 0.949 ? ? 0.193 0.051 ? 10 1 0.991 ? 3.020 3.130 ? ? ? ? ? ? 456 99.600 ? ? ? ? 0.170 ? ? ? ? ? ? ? ? 13.700 ? 0.999 ? ? 0.176 0.047 ? 11 1 0.993 ? 3.130 3.260 ? ? ? ? ? ? 464 99.600 ? ? ? ? 0.135 ? ? ? ? ? ? ? ? 13.600 ? 0.944 ? ? 0.140 0.037 ? 12 1 0.995 ? 3.260 3.410 ? ? ? ? ? ? 466 99.800 ? ? ? ? 0.114 ? ? ? ? ? ? ? ? 13.600 ? 0.996 ? ? 0.119 0.032 ? 13 1 0.997 ? 3.410 3.580 ? ? ? ? ? ? 447 99.800 ? ? ? ? 0.087 ? ? ? ? ? ? ? ? 13.500 ? 1.035 ? ? 0.090 0.024 ? 14 1 0.998 ? 3.580 3.810 ? ? ? ? ? ? 465 99.800 ? ? ? ? 0.074 ? ? ? ? ? ? ? ? 13.600 ? 1.070 ? ? 0.077 0.021 ? 15 1 0.998 ? 3.810 4.100 ? ? ? ? ? ? 467 99.800 ? ? ? ? 0.060 ? ? ? ? ? ? ? ? 13.300 ? 0.985 ? ? 0.063 0.017 ? 16 1 0.999 ? 4.100 4.520 ? ? ? ? ? ? 471 99.600 ? ? ? ? 0.050 ? ? ? ? ? ? ? ? 13.500 ? 1.010 ? ? 0.052 0.014 ? 17 1 0.999 ? 4.520 5.170 ? ? ? ? ? ? 472 100.000 ? ? ? ? 0.049 ? ? ? ? ? ? ? ? 13.200 ? 0.995 ? ? 0.051 0.014 ? 18 1 0.999 ? 5.170 6.510 ? ? ? ? ? ? 486 100.000 ? ? ? ? 0.052 ? ? ? ? ? ? ? ? 13.000 ? 0.944 ? ? 0.054 0.015 ? 19 1 0.999 ? 6.510 50.000 ? ? ? ? ? ? 521 99.800 ? ? ? ? 0.032 ? ? ? ? ? ? ? ? 12.000 ? 0.791 ? ? 0.034 0.009 ? 20 1 0.999 ? # _refine.aniso_B[1][1] -0.0900 _refine.aniso_B[1][2] -0.0500 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][2] -0.0900 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] 0.3000 _refine.B_iso_max 83.440 _refine.B_iso_mean 36.0420 _refine.B_iso_min 5.960 _refine.correlation_coeff_Fo_to_Fc 0.9510 _refine.correlation_coeff_Fo_to_Fc_free 0.9130 _refine.details 'HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT U VALUES : REFINED INDIVIDUALLY' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5Y8B _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.4000 _refine.ls_d_res_low 50.0100 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 8719 _refine.ls_number_reflns_R_free 447 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.0900 _refine.ls_percent_reflns_R_free 4.9000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1831 _refine.ls_R_factor_R_free 0.2463 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1797 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 5GJ3 _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.7780 _refine.pdbx_overall_ESU_R_Free 0.2910 _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 8.4940 _refine.overall_SU_ML 0.1990 _refine.overall_SU_R_Cruickshank_DPI 0.7782 _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 2.4000 _refine_hist.d_res_low 50.0100 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 77 _refine_hist.number_atoms_total 2018 _refine_hist.pdbx_number_residues_total 263 _refine_hist.pdbx_B_iso_mean_ligand 44.77 _refine_hist.pdbx_B_iso_mean_solvent 38.75 _refine_hist.pdbx_number_atoms_protein 1939 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.010 0.019 1969 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 1.373 1.997 2683 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 5.364 5.000 262 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 38.907 24.103 78 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 13.795 15.000 314 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 21.588 15.000 17 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.084 0.200 321 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.005 0.021 1486 ? r_gen_planes_refined ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.4040 _refine_ls_shell.d_res_low 2.4660 _refine_ls_shell.number_reflns_all 626 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 35 _refine_ls_shell.number_reflns_R_work 591 _refine_ls_shell.percent_reflns_obs 92.0600 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.3830 _refine_ls_shell.R_factor_R_free_error 0.0000 _refine_ls_shell.R_factor_R_work 0.2290 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5Y8B _struct.title 'Periplasmic heme-binding protein RhuT from Roseiflexus sp. RS-1 in apo form' _struct.pdbx_model_details 'Periplasmic heme-binding protein RhuT in ABC heme transporter system' _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5Y8B _struct_keywords.text 'metal transport, TRANSPORT PROTEIN' _struct_keywords.pdbx_keywords 'TRANSPORT PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASN A 12 ? LEU A 22 ? ASN A 102 LEU A 112 1 ? 11 HELX_P HELX_P2 AA2 MET A 24 ? GLU A 26 ? MET A 114 GLU A 116 5 ? 3 HELX_P HELX_P3 AA3 PRO A 38 ? LYS A 43 ? PRO A 128 LYS A 133 1 ? 6 HELX_P HELX_P4 AA4 SER A 55 ? SER A 61 ? SER A 145 SER A 151 1 ? 7 HELX_P HELX_P5 AA5 PRO A 75 ? ALA A 85 ? PRO A 165 ALA A 175 1 ? 11 HELX_P HELX_P6 AA6 ASP A 99 ? LEU A 112 ? ASP A 189 LEU A 202 1 ? 14 HELX_P HELX_P7 AA7 ILE A 114 ? ALA A 136 ? ILE A 204 ALA A 226 1 ? 23 HELX_P HELX_P8 AA8 ARG A 137 ? ILE A 139 ? ARG A 227 ILE A 229 5 ? 3 HELX_P HELX_P9 AA9 THR A 163 ? ALA A 172 ? THR A 253 ALA A 262 1 ? 10 HELX_P HELX_P10 AB1 ALA A 177 ? ALA A 181 ? ALA A 267 ALA A 271 1 ? 5 HELX_P HELX_P11 AB2 SER A 190 ? GLN A 198 ? SER A 280 GLN A 288 1 ? 9 HELX_P HELX_P12 AB3 ASP A 206 ? VAL A 212 ? ASP A 296 VAL A 302 1 ? 7 HELX_P HELX_P13 AB4 GLY A 213 ? LEU A 219 ? GLY A 303 LEU A 309 1 ? 7 HELX_P HELX_P14 AB5 THR A 227 ? GLN A 232 ? THR A 317 GLN A 322 1 ? 6 HELX_P HELX_P15 AB6 ASP A 239 ? GLY A 245 ? ASP A 329 GLY A 335 1 ? 7 HELX_P HELX_P16 AB7 ARG A 249 ? GLN A 266 ? ARG A 339 GLN A 356 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A ASP 14 OD1 ? ? ? 1_555 B MG . MG ? ? A ASP 104 A MG 401 1_555 ? ? ? ? ? ? ? 2.920 ? ? metalc2 metalc ? ? A ASP 14 OD2 ? ? ? 1_555 B MG . MG ? ? A ASP 104 A MG 401 1_555 ? ? ? ? ? ? ? 2.401 ? ? metalc3 metalc ? ? A ASP 70 OD2 ? ? ? 1_555 B MG . MG ? ? A ASP 160 A MG 401 1_555 ? ? ? ? ? ? ? 2.121 ? ? metalc4 metalc ? ? A ASP 94 OD2 ? ? ? 1_555 B MG . MG ? ? A ASP 184 A MG 401 1_555 ? ? ? ? ? ? ? 2.042 ? ? metalc5 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 401 A HOH 537 1_555 ? ? ? ? ? ? ? 2.087 ? ? metalc6 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 401 A HOH 539 1_555 ? ? ? ? ? ? ? 2.247 ? ? metalc7 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 402 A HOH 503 2_565 ? ? ? ? ? ? ? 2.005 ? ? metalc8 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 402 A HOH 504 2_565 ? ? ? ? ? ? ? 2.103 ? ? metalc9 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 402 A HOH 525 1_555 ? ? ? ? ? ? ? 2.280 ? ? metalc10 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 402 A HOH 526 1_555 ? ? ? ? ? ? ? 2.343 ? ? metalc11 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 402 A HOH 548 1_555 ? ? ? ? ? ? ? 2.153 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 TYR 37 A . ? TYR 127 A PRO 38 A ? PRO 128 A 1 -0.75 2 GLY 74 A . ? GLY 164 A PRO 75 A ? PRO 165 A 1 4.93 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 4 ? AA3 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA2 1 2 ? parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA3 1 2 ? parallel AA3 2 3 ? parallel AA3 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 28 ? GLY A 30 ? VAL A 118 GLY A 120 AA1 2 ILE A 8 ? SER A 10 ? ILE A 98 SER A 100 AA1 3 LEU A 66 ? ASP A 70 ? LEU A 156 ASP A 160 AA1 4 LEU A 89 ? THR A 92 ? LEU A 179 THR A 182 AA2 1 ILE A 175 ? ASN A 176 ? ILE A 265 ASN A 266 AA2 2 HIS A 144 ? ARG A 151 ? HIS A 234 ARG A 241 AA2 3 VAL A 155 ? ALA A 159 ? VAL A 245 ALA A 249 AA2 4 PHE A 186 ? PRO A 188 ? PHE A 276 PRO A 278 AA3 1 ILE A 175 ? ASN A 176 ? ILE A 265 ASN A 266 AA3 2 HIS A 144 ? ARG A 151 ? HIS A 234 ARG A 241 AA3 3 VAL A 201 ? LEU A 205 ? VAL A 291 LEU A 295 AA3 4 ILE A 235 ? LEU A 238 ? ILE A 325 LEU A 328 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O VAL A 29 ? O VAL A 119 N ILE A 8 ? N ILE A 98 AA1 2 3 N VAL A 9 ? N VAL A 99 O LEU A 66 ? O LEU A 156 AA1 3 4 N VAL A 67 ? N VAL A 157 O ALA A 90 ? O ALA A 180 AA2 1 2 O ILE A 175 ? O ILE A 265 N VAL A 145 ? N VAL A 235 AA2 2 3 N TYR A 149 ? N TYR A 239 O GLN A 157 ? O GLN A 247 AA2 3 4 N VAL A 158 ? N VAL A 248 O LYS A 187 ? O LYS A 277 AA3 1 2 O ILE A 175 ? O ILE A 265 N VAL A 145 ? N VAL A 235 AA3 2 3 N LEU A 146 ? N LEU A 236 O LEU A 203 ? O LEU A 293 AA3 3 4 N VAL A 204 ? N VAL A 294 O ILE A 236 ? O ILE A 326 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 401 ? 5 'binding site for residue MG A 401' AC2 Software A MG 402 ? 6 'binding site for residue MG A 402' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ASP A 14 ? ASP A 104 . ? 1_555 ? 2 AC1 5 ASP A 70 ? ASP A 160 . ? 1_555 ? 3 AC1 5 ASP A 94 ? ASP A 184 . ? 1_555 ? 4 AC1 5 HOH D . ? HOH A 537 . ? 1_555 ? 5 AC1 5 HOH D . ? HOH A 539 . ? 1_555 ? 6 AC2 6 ASP A 256 ? ASP A 346 . ? 2_565 ? 7 AC2 6 HOH D . ? HOH A 503 . ? 2_565 ? 8 AC2 6 HOH D . ? HOH A 504 . ? 2_565 ? 9 AC2 6 HOH D . ? HOH A 525 . ? 1_555 ? 10 AC2 6 HOH D . ? HOH A 526 . ? 1_555 ? 11 AC2 6 HOH D . ? HOH A 548 . ? 1_555 ? # _atom_sites.entry_id 5Y8B _atom_sites.fract_transf_matrix[1][1] 0.014077 _atom_sites.fract_transf_matrix[1][2] 0.008127 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016254 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012787 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C MG N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 91 ? ? ? A . n A 1 2 PRO 2 92 ? ? ? A . n A 1 3 LEU 3 93 ? ? ? A . n A 1 4 GLY 4 94 94 GLY GLY A . n A 1 5 SER 5 95 95 SER SER A . n A 1 6 GLU 6 96 96 GLU GLU A . n A 1 7 ARG 7 97 97 ARG ARG A . n A 1 8 ILE 8 98 98 ILE ILE A . n A 1 9 VAL 9 99 99 VAL VAL A . n A 1 10 SER 10 100 100 SER SER A . n A 1 11 LEU 11 101 101 LEU LEU A . n A 1 12 ASN 12 102 102 ASN ASN A . n A 1 13 GLY 13 103 103 GLY GLY A . n A 1 14 ASP 14 104 104 ASP ASP A . n A 1 15 ILE 15 105 105 ILE ILE A . n A 1 16 THR 16 106 106 THR THR A . n A 1 17 GLU 17 107 107 GLU GLU A . n A 1 18 ILE 18 108 108 ILE ILE A . n A 1 19 ILE 19 109 109 ILE ILE A . n A 1 20 PHE 20 110 110 PHE PHE A . n A 1 21 ALA 21 111 111 ALA ALA A . n A 1 22 LEU 22 112 112 LEU LEU A . n A 1 23 GLY 23 113 113 GLY GLY A . n A 1 24 MET 24 114 114 MET MET A . n A 1 25 GLY 25 115 115 GLY GLY A . n A 1 26 GLU 26 116 116 GLU GLU A . n A 1 27 TYR 27 117 117 TYR TYR A . n A 1 28 VAL 28 118 118 VAL VAL A . n A 1 29 VAL 29 119 119 VAL VAL A . n A 1 30 GLY 30 120 120 GLY GLY A . n A 1 31 VAL 31 121 121 VAL VAL A . n A 1 32 ASP 32 122 122 ASP ASP A . n A 1 33 SER 33 123 123 SER SER A . n A 1 34 SER 34 124 124 SER SER A . n A 1 35 ALA 35 125 125 ALA ALA A . n A 1 36 THR 36 126 126 THR THR A . n A 1 37 TYR 37 127 127 TYR TYR A . n A 1 38 PRO 38 128 128 PRO PRO A . n A 1 39 PRO 39 129 129 PRO PRO A . n A 1 40 GLU 40 130 130 GLU GLU A . n A 1 41 ARG 41 131 131 ARG ARG A . n A 1 42 THR 42 132 132 THR THR A . n A 1 43 LYS 43 133 133 LYS LYS A . n A 1 44 MET 44 134 134 MET MET A . n A 1 45 LEU 45 135 135 LEU LEU A . n A 1 46 PRO 46 136 136 PRO PRO A . n A 1 47 ASN 47 137 137 ASN ASN A . n A 1 48 ILE 48 138 138 ILE ILE A . n A 1 49 GLY 49 139 139 GLY GLY A . n A 1 50 TYR 50 140 140 TYR TYR A . n A 1 51 GLN 51 141 141 GLN GLN A . n A 1 52 ARG 52 142 142 ARG ARG A . n A 1 53 ARG 53 143 143 ARG ARG A . n A 1 54 LEU 54 144 144 LEU LEU A . n A 1 55 SER 55 145 145 SER SER A . n A 1 56 ALA 56 146 146 ALA ALA A . n A 1 57 GLU 57 147 147 GLU GLU A . n A 1 58 GLY 58 148 148 GLY GLY A . n A 1 59 ILE 59 149 149 ILE ILE A . n A 1 60 LEU 60 150 150 LEU LEU A . n A 1 61 SER 61 151 151 SER SER A . n A 1 62 LEU 62 152 152 LEU LEU A . n A 1 63 ASN 63 153 153 ASN ASN A . n A 1 64 PRO 64 154 154 PRO PRO A . n A 1 65 THR 65 155 155 THR THR A . n A 1 66 LEU 66 156 156 LEU LEU A . n A 1 67 VAL 67 157 157 VAL VAL A . n A 1 68 ILE 68 158 158 ILE ILE A . n A 1 69 GLY 69 159 159 GLY GLY A . n A 1 70 ASP 70 160 160 ASP ASP A . n A 1 71 GLU 71 161 161 GLU GLU A . n A 1 72 ALA 72 162 162 ALA ALA A . n A 1 73 ALA 73 163 163 ALA ALA A . n A 1 74 GLY 74 164 164 GLY GLY A . n A 1 75 PRO 75 165 165 PRO PRO A . n A 1 76 PRO 76 166 166 PRO PRO A . n A 1 77 GLU 77 167 167 GLU GLU A . n A 1 78 THR 78 168 168 THR THR A . n A 1 79 LEU 79 169 169 LEU LEU A . n A 1 80 ALA 80 170 170 ALA ALA A . n A 1 81 GLN 81 171 171 GLN GLN A . n A 1 82 ILE 82 172 172 ILE ILE A . n A 1 83 ARG 83 173 173 ARG ARG A . n A 1 84 ALA 84 174 174 ALA ALA A . n A 1 85 ALA 85 175 175 ALA ALA A . n A 1 86 GLY 86 176 176 GLY GLY A . n A 1 87 VAL 87 177 177 VAL VAL A . n A 1 88 PRO 88 178 178 PRO PRO A . n A 1 89 LEU 89 179 179 LEU LEU A . n A 1 90 ALA 90 180 180 ALA ALA A . n A 1 91 ILE 91 181 181 ILE ILE A . n A 1 92 THR 92 182 182 THR THR A . n A 1 93 ALA 93 183 183 ALA ALA A . n A 1 94 ASP 94 184 184 ASP ASP A . n A 1 95 PRO 95 185 185 PRO PRO A . n A 1 96 PRO 96 186 186 PRO PRO A . n A 1 97 SER 97 187 187 SER SER A . n A 1 98 LEU 98 188 188 LEU LEU A . n A 1 99 ASP 99 189 189 ASP ASP A . n A 1 100 ALA 100 190 190 ALA ALA A . n A 1 101 PRO 101 191 191 PRO PRO A . n A 1 102 GLN 102 192 192 GLN GLN A . n A 1 103 GLN 103 193 193 GLN GLN A . n A 1 104 LYS 104 194 194 LYS LYS A . n A 1 105 ILE 105 195 195 ILE ILE A . n A 1 106 ARG 106 196 196 ARG ARG A . n A 1 107 PHE 107 197 197 PHE PHE A . n A 1 108 VAL 108 198 198 VAL VAL A . n A 1 109 ALA 109 199 199 ALA ALA A . n A 1 110 GLN 110 200 200 GLN GLN A . n A 1 111 ALA 111 201 201 ALA ALA A . n A 1 112 LEU 112 202 202 LEU LEU A . n A 1 113 GLY 113 203 203 GLY GLY A . n A 1 114 ILE 114 204 204 ILE ILE A . n A 1 115 PRO 115 205 205 PRO PRO A . n A 1 116 GLN 116 206 206 GLN GLN A . n A 1 117 ARG 117 207 207 ARG ARG A . n A 1 118 GLY 118 208 208 GLY GLY A . n A 1 119 GLU 119 209 209 GLU GLU A . n A 1 120 ARG 120 210 210 ARG ARG A . n A 1 121 LEU 121 211 211 LEU LEU A . n A 1 122 ALA 122 212 212 ALA ALA A . n A 1 123 ALA 123 213 213 ALA ALA A . n A 1 124 GLN 124 214 214 GLN GLN A . n A 1 125 VAL 125 215 215 VAL VAL A . n A 1 126 GLU 126 216 216 GLU GLU A . n A 1 127 ALA 127 217 217 ALA ALA A . n A 1 128 GLU 128 218 218 GLU GLU A . n A 1 129 ILE 129 219 219 ILE ILE A . n A 1 130 ALA 130 220 220 ALA ALA A . n A 1 131 ALA 131 221 221 ALA ALA A . n A 1 132 ALA 132 222 222 ALA ALA A . n A 1 133 ARG 133 223 223 ARG ARG A . n A 1 134 ASP 134 224 224 ASP ASP A . n A 1 135 LEU 135 225 225 LEU LEU A . n A 1 136 ALA 136 226 226 ALA ALA A . n A 1 137 ARG 137 227 227 ARG ARG A . n A 1 138 ARG 138 228 228 ARG ARG A . n A 1 139 ILE 139 229 229 ILE ILE A . n A 1 140 THR 140 230 230 THR THR A . n A 1 141 ASN 141 231 231 ASN ASN A . n A 1 142 PRO 142 232 232 PRO PRO A . n A 1 143 PRO 143 233 233 PRO PRO A . n A 1 144 HIS 144 234 234 HIS HIS A . n A 1 145 VAL 145 235 235 VAL VAL A . n A 1 146 LEU 146 236 236 LEU LEU A . n A 1 147 PHE 147 237 237 PHE PHE A . n A 1 148 LEU 148 238 238 LEU LEU A . n A 1 149 TYR 149 239 239 TYR TYR A . n A 1 150 LEU 150 240 240 LEU LEU A . n A 1 151 ARG 151 241 241 ARG ARG A . n A 1 152 GLY 152 242 242 GLY GLY A . n A 1 153 THR 153 243 243 THR THR A . n A 1 154 ASP 154 244 244 ASP ASP A . n A 1 155 VAL 155 245 245 VAL VAL A . n A 1 156 GLN 156 246 246 GLN GLN A . n A 1 157 GLN 157 247 247 GLN GLN A . n A 1 158 VAL 158 248 248 VAL VAL A . n A 1 159 ALA 159 249 249 ALA ALA A . n A 1 160 GLY 160 250 250 GLY GLY A . n A 1 161 ARG 161 251 251 ARG ARG A . n A 1 162 ASN 162 252 252 ASN ASN A . n A 1 163 THR 163 253 253 THR THR A . n A 1 164 ALA 164 254 254 ALA ALA A . n A 1 165 VAL 165 255 255 VAL VAL A . n A 1 166 ASP 166 256 256 ASP ASP A . n A 1 167 VAL 167 257 257 VAL VAL A . n A 1 168 MET 168 258 258 MET MET A . n A 1 169 ILE 169 259 259 ILE ILE A . n A 1 170 ALA 170 260 260 ALA ALA A . n A 1 171 ALA 171 261 261 ALA ALA A . n A 1 172 ALA 172 262 262 ALA ALA A . n A 1 173 GLY 173 263 263 GLY GLY A . n A 1 174 GLY 174 264 264 GLY GLY A . n A 1 175 ILE 175 265 265 ILE ILE A . n A 1 176 ASN 176 266 266 ASN ASN A . n A 1 177 ALA 177 267 267 ALA ALA A . n A 1 178 ALA 178 268 268 ALA ALA A . n A 1 179 ALA 179 269 269 ALA ALA A . n A 1 180 ASP 180 270 270 ASP ASP A . n A 1 181 ALA 181 271 271 ALA ALA A . n A 1 182 GLY 182 272 272 GLY GLY A . n A 1 183 ILE 183 273 273 ILE ILE A . n A 1 184 VAL 184 274 274 VAL VAL A . n A 1 185 GLU 185 275 275 GLU GLU A . n A 1 186 PHE 186 276 276 PHE PHE A . n A 1 187 LYS 187 277 277 LYS LYS A . n A 1 188 PRO 188 278 278 PRO PRO A . n A 1 189 LEU 189 279 279 LEU LEU A . n A 1 190 SER 190 280 280 SER SER A . n A 1 191 PRO 191 281 281 PRO PRO A . n A 1 192 GLU 192 282 282 GLU GLU A . n A 1 193 VAL 193 283 283 VAL VAL A . n A 1 194 VAL 194 284 284 VAL VAL A . n A 1 195 ILE 195 285 285 ILE ILE A . n A 1 196 ALA 196 286 286 ALA ALA A . n A 1 197 ALA 197 287 287 ALA ALA A . n A 1 198 GLN 198 288 288 GLN GLN A . n A 1 199 PRO 199 289 289 PRO PRO A . n A 1 200 ASP 200 290 290 ASP ASP A . n A 1 201 VAL 201 291 291 VAL VAL A . n A 1 202 LEU 202 292 292 LEU LEU A . n A 1 203 LEU 203 293 293 LEU LEU A . n A 1 204 VAL 204 294 294 VAL VAL A . n A 1 205 LEU 205 295 295 LEU LEU A . n A 1 206 ASP 206 296 296 ASP ASP A . n A 1 207 LYS 207 297 297 LYS LYS A . n A 1 208 GLY 208 298 298 GLY GLY A . n A 1 209 LEU 209 299 299 LEU LEU A . n A 1 210 GLU 210 300 300 GLU GLU A . n A 1 211 SER 211 301 301 SER SER A . n A 1 212 VAL 212 302 302 VAL VAL A . n A 1 213 GLY 213 303 303 GLY GLY A . n A 1 214 GLY 214 304 304 GLY GLY A . n A 1 215 VAL 215 305 305 VAL VAL A . n A 1 216 ASP 216 306 306 ASP ASP A . n A 1 217 GLY 217 307 307 GLY GLY A . n A 1 218 LEU 218 308 308 LEU LEU A . n A 1 219 LEU 219 309 309 LEU LEU A . n A 1 220 LYS 220 310 310 LYS LYS A . n A 1 221 ILE 221 311 311 ILE ILE A . n A 1 222 PRO 222 312 312 PRO PRO A . n A 1 223 GLY 223 313 313 GLY GLY A . n A 1 224 LEU 224 314 314 LEU LEU A . n A 1 225 ALA 225 315 315 ALA ALA A . n A 1 226 ASP 226 316 316 ASP ASP A . n A 1 227 THR 227 317 317 THR THR A . n A 1 228 PRO 228 318 318 PRO PRO A . n A 1 229 ALA 229 319 319 ALA ALA A . n A 1 230 GLY 230 320 320 GLY GLY A . n A 1 231 ARG 231 321 321 ARG ARG A . n A 1 232 GLN 232 322 322 GLN GLN A . n A 1 233 ARG 233 323 323 ARG ARG A . n A 1 234 ARG 234 324 324 ARG ARG A . n A 1 235 ILE 235 325 325 ILE ILE A . n A 1 236 ILE 236 326 326 ILE ILE A . n A 1 237 ALA 237 327 327 ALA ALA A . n A 1 238 LEU 238 328 328 LEU LEU A . n A 1 239 ASP 239 329 329 ASP ASP A . n A 1 240 ASP 240 330 330 ASP ASP A . n A 1 241 LEU 241 331 331 LEU LEU A . n A 1 242 TYR 242 332 332 TYR TYR A . n A 1 243 LEU 243 333 333 LEU LEU A . n A 1 244 LEU 244 334 334 LEU LEU A . n A 1 245 GLY 245 335 335 GLY GLY A . n A 1 246 MET 246 336 336 MET MET A . n A 1 247 GLY 247 337 337 GLY GLY A . n A 1 248 PRO 248 338 338 PRO PRO A . n A 1 249 ARG 249 339 339 ARG ARG A . n A 1 250 THR 250 340 340 THR THR A . n A 1 251 GLY 251 341 341 GLY GLY A . n A 1 252 GLN 252 342 342 GLN GLN A . n A 1 253 ALA 253 343 343 ALA ALA A . n A 1 254 LEU 254 344 344 LEU LEU A . n A 1 255 THR 255 345 345 THR THR A . n A 1 256 ASP 256 346 346 ASP ASP A . n A 1 257 LEU 257 347 347 LEU LEU A . n A 1 258 THR 258 348 348 THR THR A . n A 1 259 ILE 259 349 349 ILE ILE A . n A 1 260 ALA 260 350 350 ALA ALA A . n A 1 261 PHE 261 351 351 PHE PHE A . n A 1 262 TYR 262 352 352 TYR TYR A . n A 1 263 ASP 263 353 353 ASP ASP A . n A 1 264 ALA 264 354 354 ALA ALA A . n A 1 265 ALA 265 355 355 ALA ALA A . n A 1 266 GLN 266 356 356 GLN GLN A . n A 1 267 GLY 267 357 ? ? ? A . n A 1 268 SER 268 358 ? ? ? A . n A 1 269 ARG 269 359 ? ? ? A . n A 1 270 PRO 270 360 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 401 361 MG MG A . C 2 MG 1 402 362 MG MG A . D 3 HOH 1 501 473 HOH HOH A . D 3 HOH 2 502 466 HOH HOH A . D 3 HOH 3 503 460 HOH HOH A . D 3 HOH 4 504 461 HOH HOH A . D 3 HOH 5 505 469 HOH HOH A . D 3 HOH 6 506 471 HOH HOH A . D 3 HOH 7 507 401 HOH HOH A . D 3 HOH 8 508 428 HOH HOH A . D 3 HOH 9 509 437 HOH HOH A . D 3 HOH 10 510 403 HOH HOH A . D 3 HOH 11 511 409 HOH HOH A . D 3 HOH 12 512 411 HOH HOH A . D 3 HOH 13 513 446 HOH HOH A . D 3 HOH 14 514 470 HOH HOH A . D 3 HOH 15 515 441 HOH HOH A . D 3 HOH 16 516 444 HOH HOH A . D 3 HOH 17 517 416 HOH HOH A . D 3 HOH 18 518 420 HOH HOH A . D 3 HOH 19 519 406 HOH HOH A . D 3 HOH 20 520 468 HOH HOH A . D 3 HOH 21 521 421 HOH HOH A . D 3 HOH 22 522 408 HOH HOH A . D 3 HOH 23 523 426 HOH HOH A . D 3 HOH 24 524 415 HOH HOH A . D 3 HOH 25 525 462 HOH HOH A . D 3 HOH 26 526 463 HOH HOH A . D 3 HOH 27 527 404 HOH HOH A . D 3 HOH 28 528 440 HOH HOH A . D 3 HOH 29 529 431 HOH HOH A . D 3 HOH 30 530 448 HOH HOH A . D 3 HOH 31 531 427 HOH HOH A . D 3 HOH 32 532 477 HOH HOH A . D 3 HOH 33 533 474 HOH HOH A . D 3 HOH 34 534 465 HOH HOH A . D 3 HOH 35 535 418 HOH HOH A . D 3 HOH 36 536 450 HOH HOH A . D 3 HOH 37 537 453 HOH HOH A . D 3 HOH 38 538 405 HOH HOH A . D 3 HOH 39 539 424 HOH HOH A . D 3 HOH 40 540 447 HOH HOH A . D 3 HOH 41 541 417 HOH HOH A . D 3 HOH 42 542 422 HOH HOH A . D 3 HOH 43 543 472 HOH HOH A . D 3 HOH 44 544 434 HOH HOH A . D 3 HOH 45 545 410 HOH HOH A . D 3 HOH 46 546 475 HOH HOH A . D 3 HOH 47 547 443 HOH HOH A . D 3 HOH 48 548 459 HOH HOH A . D 3 HOH 49 549 430 HOH HOH A . D 3 HOH 50 550 438 HOH HOH A . D 3 HOH 51 551 445 HOH HOH A . D 3 HOH 52 552 467 HOH HOH A . D 3 HOH 53 553 414 HOH HOH A . D 3 HOH 54 554 455 HOH HOH A . D 3 HOH 55 555 432 HOH HOH A . D 3 HOH 56 556 423 HOH HOH A . D 3 HOH 57 557 425 HOH HOH A . D 3 HOH 58 558 436 HOH HOH A . D 3 HOH 59 559 429 HOH HOH A . D 3 HOH 60 560 419 HOH HOH A . D 3 HOH 61 561 412 HOH HOH A . D 3 HOH 62 562 433 HOH HOH A . D 3 HOH 63 563 442 HOH HOH A . D 3 HOH 64 564 435 HOH HOH A . D 3 HOH 65 565 449 HOH HOH A . D 3 HOH 66 566 456 HOH HOH A . D 3 HOH 67 567 464 HOH HOH A . D 3 HOH 68 568 402 HOH HOH A . D 3 HOH 69 569 413 HOH HOH A . D 3 HOH 70 570 439 HOH HOH A . D 3 HOH 71 571 407 HOH HOH A . D 3 HOH 72 572 458 HOH HOH A . D 3 HOH 73 573 457 HOH HOH A . D 3 HOH 74 574 454 HOH HOH A . D 3 HOH 75 575 476 HOH HOH A . D 3 HOH 76 576 451 HOH HOH A . D 3 HOH 77 577 452 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 110 ? 1 MORE -9 ? 1 'SSA (A^2)' 12150 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD1 ? A ASP 14 ? A ASP 104 ? 1_555 MG ? B MG . ? A MG 401 ? 1_555 OD2 ? A ASP 14 ? A ASP 104 ? 1_555 46.8 ? 2 OD1 ? A ASP 14 ? A ASP 104 ? 1_555 MG ? B MG . ? A MG 401 ? 1_555 OD2 ? A ASP 70 ? A ASP 160 ? 1_555 76.7 ? 3 OD2 ? A ASP 14 ? A ASP 104 ? 1_555 MG ? B MG . ? A MG 401 ? 1_555 OD2 ? A ASP 70 ? A ASP 160 ? 1_555 82.0 ? 4 OD1 ? A ASP 14 ? A ASP 104 ? 1_555 MG ? B MG . ? A MG 401 ? 1_555 OD2 ? A ASP 94 ? A ASP 184 ? 1_555 132.3 ? 5 OD2 ? A ASP 14 ? A ASP 104 ? 1_555 MG ? B MG . ? A MG 401 ? 1_555 OD2 ? A ASP 94 ? A ASP 184 ? 1_555 86.6 ? 6 OD2 ? A ASP 70 ? A ASP 160 ? 1_555 MG ? B MG . ? A MG 401 ? 1_555 OD2 ? A ASP 94 ? A ASP 184 ? 1_555 88.9 ? 7 OD1 ? A ASP 14 ? A ASP 104 ? 1_555 MG ? B MG . ? A MG 401 ? 1_555 O ? D HOH . ? A HOH 537 ? 1_555 94.4 ? 8 OD2 ? A ASP 14 ? A ASP 104 ? 1_555 MG ? B MG . ? A MG 401 ? 1_555 O ? D HOH . ? A HOH 537 ? 1_555 88.1 ? 9 OD2 ? A ASP 70 ? A ASP 160 ? 1_555 MG ? B MG . ? A MG 401 ? 1_555 O ? D HOH . ? A HOH 537 ? 1_555 169.7 ? 10 OD2 ? A ASP 94 ? A ASP 184 ? 1_555 MG ? B MG . ? A MG 401 ? 1_555 O ? D HOH . ? A HOH 537 ? 1_555 93.4 ? 11 OD1 ? A ASP 14 ? A ASP 104 ? 1_555 MG ? B MG . ? A MG 401 ? 1_555 O ? D HOH . ? A HOH 539 ? 1_555 79.4 ? 12 OD2 ? A ASP 14 ? A ASP 104 ? 1_555 MG ? B MG . ? A MG 401 ? 1_555 O ? D HOH . ? A HOH 539 ? 1_555 126.2 ? 13 OD2 ? A ASP 70 ? A ASP 160 ? 1_555 MG ? B MG . ? A MG 401 ? 1_555 O ? D HOH . ? A HOH 539 ? 1_555 83.6 ? 14 OD2 ? A ASP 94 ? A ASP 184 ? 1_555 MG ? B MG . ? A MG 401 ? 1_555 O ? D HOH . ? A HOH 539 ? 1_555 144.6 ? 15 O ? D HOH . ? A HOH 537 ? 1_555 MG ? B MG . ? A MG 401 ? 1_555 O ? D HOH . ? A HOH 539 ? 1_555 100.0 ? 16 O ? D HOH . ? A HOH 503 ? 2_565 MG ? C MG . ? A MG 402 ? 1_555 O ? D HOH . ? A HOH 504 ? 2_565 94.3 ? 17 O ? D HOH . ? A HOH 503 ? 2_565 MG ? C MG . ? A MG 402 ? 1_555 O ? D HOH . ? A HOH 525 ? 1_555 87.4 ? 18 O ? D HOH . ? A HOH 504 ? 2_565 MG ? C MG . ? A MG 402 ? 1_555 O ? D HOH . ? A HOH 525 ? 1_555 158.8 ? 19 O ? D HOH . ? A HOH 503 ? 2_565 MG ? C MG . ? A MG 402 ? 1_555 O ? D HOH . ? A HOH 526 ? 1_555 78.0 ? 20 O ? D HOH . ? A HOH 504 ? 2_565 MG ? C MG . ? A MG 402 ? 1_555 O ? D HOH . ? A HOH 526 ? 1_555 85.0 ? 21 O ? D HOH . ? A HOH 525 ? 1_555 MG ? C MG . ? A MG 402 ? 1_555 O ? D HOH . ? A HOH 526 ? 1_555 74.6 ? 22 O ? D HOH . ? A HOH 503 ? 2_565 MG ? C MG . ? A MG 402 ? 1_555 O ? D HOH . ? A HOH 548 ? 1_555 165.1 ? 23 O ? D HOH . ? A HOH 504 ? 2_565 MG ? C MG . ? A MG 402 ? 1_555 O ? D HOH . ? A HOH 548 ? 1_555 89.6 ? 24 O ? D HOH . ? A HOH 525 ? 1_555 MG ? C MG . ? A MG 402 ? 1_555 O ? D HOH . ? A HOH 548 ? 1_555 83.8 ? 25 O ? D HOH . ? A HOH 526 ? 1_555 MG ? C MG . ? A MG 402 ? 1_555 O ? D HOH . ? A HOH 548 ? 1_555 88.0 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-10-11 2 'Structure model' 1 1 2017-11-22 3 'Structure model' 1 2 2023-11-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' database_2 5 3 'Structure model' pdbx_initial_refinement_model 6 3 'Structure model' pdbx_struct_conn_angle 7 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 3 'Structure model' '_database_2.pdbx_DOI' 5 3 'Structure model' '_database_2.pdbx_database_accession' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 10 3 'Structure model' '_pdbx_struct_conn_angle.value' 11 3 'Structure model' '_struct_conn.pdbx_dist_value' 12 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 13 3 'Structure model' '_struct_conn.ptnr2_symmetry' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALEPACK ? ? ? . 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0135 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.22 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? MOLREP ? ? ? . 4 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 275 ? ? 56.07 -142.71 2 1 ASP A 316 ? ? -90.82 34.50 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 91 ? A GLY 1 2 1 Y 1 A PRO 92 ? A PRO 2 3 1 Y 1 A LEU 93 ? A LEU 3 4 1 Y 1 A GLY 357 ? A GLY 267 5 1 Y 1 A SER 358 ? A SER 268 6 1 Y 1 A ARG 359 ? A ARG 269 7 1 Y 1 A PRO 360 ? A PRO 270 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 ILE N N N N 147 ILE CA C N S 148 ILE C C N N 149 ILE O O N N 150 ILE CB C N S 151 ILE CG1 C N N 152 ILE CG2 C N N 153 ILE CD1 C N N 154 ILE OXT O N N 155 ILE H H N N 156 ILE H2 H N N 157 ILE HA H N N 158 ILE HB H N N 159 ILE HG12 H N N 160 ILE HG13 H N N 161 ILE HG21 H N N 162 ILE HG22 H N N 163 ILE HG23 H N N 164 ILE HD11 H N N 165 ILE HD12 H N N 166 ILE HD13 H N N 167 ILE HXT H N N 168 LEU N N N N 169 LEU CA C N S 170 LEU C C N N 171 LEU O O N N 172 LEU CB C N N 173 LEU CG C N N 174 LEU CD1 C N N 175 LEU CD2 C N N 176 LEU OXT O N N 177 LEU H H N N 178 LEU H2 H N N 179 LEU HA H N N 180 LEU HB2 H N N 181 LEU HB3 H N N 182 LEU HG H N N 183 LEU HD11 H N N 184 LEU HD12 H N N 185 LEU HD13 H N N 186 LEU HD21 H N N 187 LEU HD22 H N N 188 LEU HD23 H N N 189 LEU HXT H N N 190 LYS N N N N 191 LYS CA C N S 192 LYS C C N N 193 LYS O O N N 194 LYS CB C N N 195 LYS CG C N N 196 LYS CD C N N 197 LYS CE C N N 198 LYS NZ N N N 199 LYS OXT O N N 200 LYS H H N N 201 LYS H2 H N N 202 LYS HA H N N 203 LYS HB2 H N N 204 LYS HB3 H N N 205 LYS HG2 H N N 206 LYS HG3 H N N 207 LYS HD2 H N N 208 LYS HD3 H N N 209 LYS HE2 H N N 210 LYS HE3 H N N 211 LYS HZ1 H N N 212 LYS HZ2 H N N 213 LYS HZ3 H N N 214 LYS HXT H N N 215 MET N N N N 216 MET CA C N S 217 MET C C N N 218 MET O O N N 219 MET CB C N N 220 MET CG C N N 221 MET SD S N N 222 MET CE C N N 223 MET OXT O N N 224 MET H H N N 225 MET H2 H N N 226 MET HA H N N 227 MET HB2 H N N 228 MET HB3 H N N 229 MET HG2 H N N 230 MET HG3 H N N 231 MET HE1 H N N 232 MET HE2 H N N 233 MET HE3 H N N 234 MET HXT H N N 235 MG MG MG N N 236 PHE N N N N 237 PHE CA C N S 238 PHE C C N N 239 PHE O O N N 240 PHE CB C N N 241 PHE CG C Y N 242 PHE CD1 C Y N 243 PHE CD2 C Y N 244 PHE CE1 C Y N 245 PHE CE2 C Y N 246 PHE CZ C Y N 247 PHE OXT O N N 248 PHE H H N N 249 PHE H2 H N N 250 PHE HA H N N 251 PHE HB2 H N N 252 PHE HB3 H N N 253 PHE HD1 H N N 254 PHE HD2 H N N 255 PHE HE1 H N N 256 PHE HE2 H N N 257 PHE HZ H N N 258 PHE HXT H N N 259 PRO N N N N 260 PRO CA C N S 261 PRO C C N N 262 PRO O O N N 263 PRO CB C N N 264 PRO CG C N N 265 PRO CD C N N 266 PRO OXT O N N 267 PRO H H N N 268 PRO HA H N N 269 PRO HB2 H N N 270 PRO HB3 H N N 271 PRO HG2 H N N 272 PRO HG3 H N N 273 PRO HD2 H N N 274 PRO HD3 H N N 275 PRO HXT H N N 276 SER N N N N 277 SER CA C N S 278 SER C C N N 279 SER O O N N 280 SER CB C N N 281 SER OG O N N 282 SER OXT O N N 283 SER H H N N 284 SER H2 H N N 285 SER HA H N N 286 SER HB2 H N N 287 SER HB3 H N N 288 SER HG H N N 289 SER HXT H N N 290 THR N N N N 291 THR CA C N S 292 THR C C N N 293 THR O O N N 294 THR CB C N R 295 THR OG1 O N N 296 THR CG2 C N N 297 THR OXT O N N 298 THR H H N N 299 THR H2 H N N 300 THR HA H N N 301 THR HB H N N 302 THR HG1 H N N 303 THR HG21 H N N 304 THR HG22 H N N 305 THR HG23 H N N 306 THR HXT H N N 307 TYR N N N N 308 TYR CA C N S 309 TYR C C N N 310 TYR O O N N 311 TYR CB C N N 312 TYR CG C Y N 313 TYR CD1 C Y N 314 TYR CD2 C Y N 315 TYR CE1 C Y N 316 TYR CE2 C Y N 317 TYR CZ C Y N 318 TYR OH O N N 319 TYR OXT O N N 320 TYR H H N N 321 TYR H2 H N N 322 TYR HA H N N 323 TYR HB2 H N N 324 TYR HB3 H N N 325 TYR HD1 H N N 326 TYR HD2 H N N 327 TYR HE1 H N N 328 TYR HE2 H N N 329 TYR HH H N N 330 TYR HXT H N N 331 VAL N N N N 332 VAL CA C N S 333 VAL C C N N 334 VAL O O N N 335 VAL CB C N N 336 VAL CG1 C N N 337 VAL CG2 C N N 338 VAL OXT O N N 339 VAL H H N N 340 VAL H2 H N N 341 VAL HA H N N 342 VAL HB H N N 343 VAL HG11 H N N 344 VAL HG12 H N N 345 VAL HG13 H N N 346 VAL HG21 H N N 347 VAL HG22 H N N 348 VAL HG23 H N N 349 VAL HXT H N N 350 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 HOH O H1 sing N N 137 HOH O H2 sing N N 138 ILE N CA sing N N 139 ILE N H sing N N 140 ILE N H2 sing N N 141 ILE CA C sing N N 142 ILE CA CB sing N N 143 ILE CA HA sing N N 144 ILE C O doub N N 145 ILE C OXT sing N N 146 ILE CB CG1 sing N N 147 ILE CB CG2 sing N N 148 ILE CB HB sing N N 149 ILE CG1 CD1 sing N N 150 ILE CG1 HG12 sing N N 151 ILE CG1 HG13 sing N N 152 ILE CG2 HG21 sing N N 153 ILE CG2 HG22 sing N N 154 ILE CG2 HG23 sing N N 155 ILE CD1 HD11 sing N N 156 ILE CD1 HD12 sing N N 157 ILE CD1 HD13 sing N N 158 ILE OXT HXT sing N N 159 LEU N CA sing N N 160 LEU N H sing N N 161 LEU N H2 sing N N 162 LEU CA C sing N N 163 LEU CA CB sing N N 164 LEU CA HA sing N N 165 LEU C O doub N N 166 LEU C OXT sing N N 167 LEU CB CG sing N N 168 LEU CB HB2 sing N N 169 LEU CB HB3 sing N N 170 LEU CG CD1 sing N N 171 LEU CG CD2 sing N N 172 LEU CG HG sing N N 173 LEU CD1 HD11 sing N N 174 LEU CD1 HD12 sing N N 175 LEU CD1 HD13 sing N N 176 LEU CD2 HD21 sing N N 177 LEU CD2 HD22 sing N N 178 LEU CD2 HD23 sing N N 179 LEU OXT HXT sing N N 180 LYS N CA sing N N 181 LYS N H sing N N 182 LYS N H2 sing N N 183 LYS CA C sing N N 184 LYS CA CB sing N N 185 LYS CA HA sing N N 186 LYS C O doub N N 187 LYS C OXT sing N N 188 LYS CB CG sing N N 189 LYS CB HB2 sing N N 190 LYS CB HB3 sing N N 191 LYS CG CD sing N N 192 LYS CG HG2 sing N N 193 LYS CG HG3 sing N N 194 LYS CD CE sing N N 195 LYS CD HD2 sing N N 196 LYS CD HD3 sing N N 197 LYS CE NZ sing N N 198 LYS CE HE2 sing N N 199 LYS CE HE3 sing N N 200 LYS NZ HZ1 sing N N 201 LYS NZ HZ2 sing N N 202 LYS NZ HZ3 sing N N 203 LYS OXT HXT sing N N 204 MET N CA sing N N 205 MET N H sing N N 206 MET N H2 sing N N 207 MET CA C sing N N 208 MET CA CB sing N N 209 MET CA HA sing N N 210 MET C O doub N N 211 MET C OXT sing N N 212 MET CB CG sing N N 213 MET CB HB2 sing N N 214 MET CB HB3 sing N N 215 MET CG SD sing N N 216 MET CG HG2 sing N N 217 MET CG HG3 sing N N 218 MET SD CE sing N N 219 MET CE HE1 sing N N 220 MET CE HE2 sing N N 221 MET CE HE3 sing N N 222 MET OXT HXT sing N N 223 PHE N CA sing N N 224 PHE N H sing N N 225 PHE N H2 sing N N 226 PHE CA C sing N N 227 PHE CA CB sing N N 228 PHE CA HA sing N N 229 PHE C O doub N N 230 PHE C OXT sing N N 231 PHE CB CG sing N N 232 PHE CB HB2 sing N N 233 PHE CB HB3 sing N N 234 PHE CG CD1 doub Y N 235 PHE CG CD2 sing Y N 236 PHE CD1 CE1 sing Y N 237 PHE CD1 HD1 sing N N 238 PHE CD2 CE2 doub Y N 239 PHE CD2 HD2 sing N N 240 PHE CE1 CZ doub Y N 241 PHE CE1 HE1 sing N N 242 PHE CE2 CZ sing Y N 243 PHE CE2 HE2 sing N N 244 PHE CZ HZ sing N N 245 PHE OXT HXT sing N N 246 PRO N CA sing N N 247 PRO N CD sing N N 248 PRO N H sing N N 249 PRO CA C sing N N 250 PRO CA CB sing N N 251 PRO CA HA sing N N 252 PRO C O doub N N 253 PRO C OXT sing N N 254 PRO CB CG sing N N 255 PRO CB HB2 sing N N 256 PRO CB HB3 sing N N 257 PRO CG CD sing N N 258 PRO CG HG2 sing N N 259 PRO CG HG3 sing N N 260 PRO CD HD2 sing N N 261 PRO CD HD3 sing N N 262 PRO OXT HXT sing N N 263 SER N CA sing N N 264 SER N H sing N N 265 SER N H2 sing N N 266 SER CA C sing N N 267 SER CA CB sing N N 268 SER CA HA sing N N 269 SER C O doub N N 270 SER C OXT sing N N 271 SER CB OG sing N N 272 SER CB HB2 sing N N 273 SER CB HB3 sing N N 274 SER OG HG sing N N 275 SER OXT HXT sing N N 276 THR N CA sing N N 277 THR N H sing N N 278 THR N H2 sing N N 279 THR CA C sing N N 280 THR CA CB sing N N 281 THR CA HA sing N N 282 THR C O doub N N 283 THR C OXT sing N N 284 THR CB OG1 sing N N 285 THR CB CG2 sing N N 286 THR CB HB sing N N 287 THR OG1 HG1 sing N N 288 THR CG2 HG21 sing N N 289 THR CG2 HG22 sing N N 290 THR CG2 HG23 sing N N 291 THR OXT HXT sing N N 292 TYR N CA sing N N 293 TYR N H sing N N 294 TYR N H2 sing N N 295 TYR CA C sing N N 296 TYR CA CB sing N N 297 TYR CA HA sing N N 298 TYR C O doub N N 299 TYR C OXT sing N N 300 TYR CB CG sing N N 301 TYR CB HB2 sing N N 302 TYR CB HB3 sing N N 303 TYR CG CD1 doub Y N 304 TYR CG CD2 sing Y N 305 TYR CD1 CE1 sing Y N 306 TYR CD1 HD1 sing N N 307 TYR CD2 CE2 doub Y N 308 TYR CD2 HD2 sing N N 309 TYR CE1 CZ doub Y N 310 TYR CE1 HE1 sing N N 311 TYR CE2 CZ sing Y N 312 TYR CE2 HE2 sing N N 313 TYR CZ OH sing N N 314 TYR OH HH sing N N 315 TYR OXT HXT sing N N 316 VAL N CA sing N N 317 VAL N H sing N N 318 VAL N H2 sing N N 319 VAL CA C sing N N 320 VAL CA CB sing N N 321 VAL CA HA sing N N 322 VAL C O doub N N 323 VAL C OXT sing N N 324 VAL CB CG1 sing N N 325 VAL CB CG2 sing N N 326 VAL CB HB sing N N 327 VAL CG1 HG11 sing N N 328 VAL CG1 HG12 sing N N 329 VAL CG1 HG13 sing N N 330 VAL CG2 HG21 sing N N 331 VAL CG2 HG22 sing N N 332 VAL CG2 HG23 sing N N 333 VAL OXT HXT sing N N 334 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Ministry of Education, Culture, Sports, Science and Technology (Japan)' Japan JP23121531 1 'Ministry of Education, Culture, Sports, Science and Technology (Japan)' Japan JP25121739 2 'Ministry of Education, Culture, Sports, Science and Technology (Japan)' Japan JP15H01655 3 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5GJ3 _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #