HEADER TRANSCRIPTION 21-AUG-17 5Y8T TITLE CRYSTAL STRUCTURE OF BACILLUS SUBTILIS PADR IN COMPLEX WITH P-COUMARIC TITLE 2 ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS SUBSP. SPIZIZENII (STRAIN SOURCE 3 ATCC 23059 / NRRL B-14472 / W23); SOURCE 4 ORGANISM_TAXID: 655816; SOURCE 5 STRAIN: ATCC 23059 / NRRL B-14472 / W23; SOURCE 6 GENE: PADR, BSUW23_04210; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSCRIPTION FACTOR, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR S.C.PARK,Y.M.KWAK,W.S.SONG,M.HONG,S.I.YOON REVDAT 3 22-NOV-23 5Y8T 1 REMARK REVDAT 2 27-DEC-17 5Y8T 1 JRNL REVDAT 1 29-NOV-17 5Y8T 0 JRNL AUTH S.C.PARK,Y.M.KWAK,W.S.SONG,M.HONG,S.I.YOON JRNL TITL STRUCTURAL BASIS OF EFFECTOR AND OPERATOR RECOGNITION BY THE JRNL TITL 2 PHENOLIC ACID-RESPONSIVE TRANSCRIPTIONAL REGULATOR PADR. JRNL REF NUCLEIC ACIDS RES. V. 45 13080 2017 JRNL REFN ESSN 1362-4962 JRNL PMID 29136175 JRNL DOI 10.1093/NAR/GKX1055 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 53676 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 2656 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3921 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2540 REMARK 3 BIN FREE R VALUE SET COUNT : 205 REMARK 3 BIN FREE R VALUE : 0.2730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4060 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 304 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.75000 REMARK 3 B22 (A**2) : -0.86000 REMARK 3 B33 (A**2) : 0.91000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.99000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.139 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.129 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.086 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.937 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4192 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2935 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5635 ; 1.393 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7154 ; 0.866 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 496 ; 5.356 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 185 ;33.479 ;23.946 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 789 ;12.666 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;21.324 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 610 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4511 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 879 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2479 ; 0.783 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1004 ; 0.241 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3971 ; 1.414 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1713 ; 2.180 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1660 ; 3.427 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 3 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : C B A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 C 2 C 87 5 REMARK 3 1 B 2 B 87 5 REMARK 3 1 A 2 A 87 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 422 ; 0.42 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 B (A): 422 ; 0.25 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 C (A): 422 ; 0.25 ; 0.50 REMARK 3 LOOSE POSITIONAL 1 A (A): 579 ; 0.90 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 B (A): 579 ; 0.51 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 C (A): 579 ; 0.50 ; 5.00 REMARK 3 MEDIUM THERMAL 1 A (A**2): 422 ; 0.67 ; 2.00 REMARK 3 MEDIUM THERMAL 1 B (A**2): 422 ; 0.69 ; 2.00 REMARK 3 MEDIUM THERMAL 1 C (A**2): 422 ; 0.59 ; 2.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 579 ; 0.77 ; 10.00 REMARK 3 LOOSE THERMAL 1 B (A**2): 579 ; 0.78 ; 10.00 REMARK 3 LOOSE THERMAL 1 C (A**2): 579 ; 0.60 ; 10.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : C B A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 C 100 C 180 5 REMARK 3 1 B 100 B 181 5 REMARK 3 1 A 100 A 180 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 2 A (A): 458 ; 0.22 ; 0.50 REMARK 3 MEDIUM POSITIONAL 2 B (A): 458 ; 0.18 ; 0.50 REMARK 3 MEDIUM POSITIONAL 2 C (A): 458 ; 0.13 ; 0.50 REMARK 3 LOOSE POSITIONAL 2 A (A): 597 ; 0.38 ; 5.00 REMARK 3 LOOSE POSITIONAL 2 B (A): 597 ; 0.27 ; 5.00 REMARK 3 LOOSE POSITIONAL 2 C (A): 597 ; 0.24 ; 5.00 REMARK 3 MEDIUM THERMAL 2 A (A**2): 458 ; 0.63 ; 2.00 REMARK 3 MEDIUM THERMAL 2 B (A**2): 458 ; 0.65 ; 2.00 REMARK 3 MEDIUM THERMAL 2 C (A**2): 458 ; 0.62 ; 2.00 REMARK 3 LOOSE THERMAL 2 A (A**2): 597 ; 0.80 ; 10.00 REMARK 3 LOOSE THERMAL 2 B (A**2): 597 ; 0.78 ; 10.00 REMARK 3 LOOSE THERMAL 2 C (A**2): 597 ; 0.75 ; 10.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : B A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 88 B 99 5 REMARK 3 1 A 88 A 99 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 3 A (A): 70 ; 0.53 ; 0.50 REMARK 3 LOOSE POSITIONAL 3 A (A): 90 ; 1.11 ; 5.00 REMARK 3 MEDIUM THERMAL 3 A (A**2): 70 ; 1.04 ; 2.00 REMARK 3 LOOSE THERMAL 3 A (A**2): 90 ; 0.83 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 86 REMARK 3 ORIGIN FOR THE GROUP (A): 89.6440 -23.2600 79.2440 REMARK 3 T TENSOR REMARK 3 T11: 0.3151 T22: 0.2001 REMARK 3 T33: 0.2458 T12: -0.0699 REMARK 3 T13: -0.0161 T23: 0.0672 REMARK 3 L TENSOR REMARK 3 L11: 4.2875 L22: 8.7502 REMARK 3 L33: 10.8324 L12: -0.7017 REMARK 3 L13: -3.7288 L23: 3.8060 REMARK 3 S TENSOR REMARK 3 S11: -0.1821 S12: 0.3334 S13: -0.4809 REMARK 3 S21: -0.9483 S22: -0.0135 S23: 0.7513 REMARK 3 S31: 0.0108 S32: -0.6542 S33: 0.1956 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 86 REMARK 3 ORIGIN FOR THE GROUP (A): 102.5510 28.8830 44.8940 REMARK 3 T TENSOR REMARK 3 T11: 0.1617 T22: 0.0963 REMARK 3 T33: 0.1108 T12: -0.0430 REMARK 3 T13: -0.0591 T23: 0.0473 REMARK 3 L TENSOR REMARK 3 L11: 2.3017 L22: 7.0561 REMARK 3 L33: 0.8639 L12: 1.7290 REMARK 3 L13: -0.1868 L23: -0.3998 REMARK 3 S TENSOR REMARK 3 S11: 0.0651 S12: -0.0496 S13: 0.0319 REMARK 3 S21: 0.2633 S22: -0.1895 S23: -0.3379 REMARK 3 S31: -0.1370 S32: 0.1554 S33: 0.1244 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 86 REMARK 3 ORIGIN FOR THE GROUP (A): 104.5960 -4.3940 23.8750 REMARK 3 T TENSOR REMARK 3 T11: 0.1294 T22: 0.2920 REMARK 3 T33: 0.0684 T12: 0.0325 REMARK 3 T13: 0.0583 T23: -0.0200 REMARK 3 L TENSOR REMARK 3 L11: 5.1307 L22: 1.9211 REMARK 3 L33: 3.4632 L12: -0.6562 REMARK 3 L13: -1.2200 L23: 0.2498 REMARK 3 S TENSOR REMARK 3 S11: 0.1728 S12: 0.8438 S13: 0.0188 REMARK 3 S21: -0.3022 S22: -0.1213 S23: -0.0062 REMARK 3 S31: -0.0658 S32: 0.0917 S33: -0.0514 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 87 A 180 REMARK 3 ORIGIN FOR THE GROUP (A): 106.4010 -5.2850 67.2160 REMARK 3 T TENSOR REMARK 3 T11: 0.0939 T22: 0.0917 REMARK 3 T33: 0.0297 T12: 0.0018 REMARK 3 T13: 0.0325 T23: 0.0138 REMARK 3 L TENSOR REMARK 3 L11: 2.2763 L22: 0.4514 REMARK 3 L33: 1.9562 L12: -0.2897 REMARK 3 L13: -0.3437 L23: 0.2514 REMARK 3 S TENSOR REMARK 3 S11: 0.1018 S12: 0.1993 S13: 0.0069 REMARK 3 S21: -0.0125 S22: 0.0504 S23: 0.0127 REMARK 3 S31: 0.0341 S32: -0.0926 S33: -0.1522 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 87 B 181 REMARK 3 ORIGIN FOR THE GROUP (A): 95.9510 1.4440 48.2880 REMARK 3 T TENSOR REMARK 3 T11: 0.0974 T22: 0.0397 REMARK 3 T33: 0.0140 T12: -0.0031 REMARK 3 T13: 0.0146 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.9659 L22: 1.9225 REMARK 3 L33: 1.9214 L12: -0.2456 REMARK 3 L13: 0.0772 L23: 0.5506 REMARK 3 S TENSOR REMARK 3 S11: -0.0709 S12: -0.0325 S13: -0.0114 REMARK 3 S21: 0.2862 S22: 0.0127 S23: 0.0123 REMARK 3 S31: -0.0659 S32: 0.1027 S33: 0.0582 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 87 C 180 REMARK 3 ORIGIN FOR THE GROUP (A): 87.4160 5.9540 42.0350 REMARK 3 T TENSOR REMARK 3 T11: 0.0710 T22: 0.0603 REMARK 3 T33: 0.0627 T12: 0.0004 REMARK 3 T13: 0.0195 T23: -0.0153 REMARK 3 L TENSOR REMARK 3 L11: 0.9340 L22: 2.1139 REMARK 3 L33: 0.7758 L12: 0.0358 REMARK 3 L13: 0.3649 L23: -0.1677 REMARK 3 S TENSOR REMARK 3 S11: -0.0300 S12: 0.0764 S13: 0.0307 REMARK 3 S21: 0.0084 S22: -0.0634 S23: 0.2668 REMARK 3 S31: -0.0534 S32: -0.0325 S33: 0.0935 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5Y8T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1300004846. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00003 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56648 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.49600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5X12 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG 3350, 0.1 M PHOSPHATE-CITRATE, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 46.60850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 62.65050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 46.60850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 62.65050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 215.36058 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 145.76588 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 478 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -5 REMARK 465 SER A -4 REMARK 465 ALA A -3 REMARK 465 LYS A -2 REMARK 465 ASP A -1 REMARK 465 PRO A 0 REMARK 465 MET A 1 REMARK 465 PHE A 56 REMARK 465 ARG A 57 REMARK 465 THR A 58 REMARK 465 THR A 59 REMARK 465 ILE A 60 REMARK 465 GLN A 61 REMARK 465 GLY A 62 REMARK 465 THR A 63 REMARK 465 LYS A 64 REMARK 465 LEU A 65 REMARK 465 GLU A 66 REMARK 465 LYS A 67 REMARK 465 LYS A 68 REMARK 465 MET A 69 REMARK 465 SER A 141 REMARK 465 ALA A 142 REMARK 465 GLU A 143 REMARK 465 GLU A 181 REMARK 465 ASP A 182 REMARK 465 GLY B -5 REMARK 465 SER B -4 REMARK 465 ALA B -3 REMARK 465 LYS B -2 REMARK 465 ASP B -1 REMARK 465 PRO B 0 REMARK 465 MET B 1 REMARK 465 THR B 59 REMARK 465 ILE B 60 REMARK 465 GLN B 61 REMARK 465 GLY B 62 REMARK 465 THR B 63 REMARK 465 LYS B 64 REMARK 465 LEU B 65 REMARK 465 GLU B 66 REMARK 465 SER B 141 REMARK 465 ALA B 142 REMARK 465 GLU B 143 REMARK 465 ASP B 182 REMARK 465 GLY C -5 REMARK 465 SER C -4 REMARK 465 ALA C -3 REMARK 465 LYS C -2 REMARK 465 ASP C -1 REMARK 465 PRO C 0 REMARK 465 MET C 1 REMARK 465 THR C 58 REMARK 465 THR C 59 REMARK 465 ILE C 60 REMARK 465 GLN C 61 REMARK 465 GLY C 62 REMARK 465 THR C 63 REMARK 465 LYS C 64 REMARK 465 LEU C 65 REMARK 465 GLU C 66 REMARK 465 LYS C 67 REMARK 465 SER C 141 REMARK 465 ALA C 142 REMARK 465 GLU C 143 REMARK 465 GLU C 181 REMARK 465 ASP C 182 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 24 OG REMARK 470 GLU A 28 CG CD OE1 OE2 REMARK 470 THR A 71 OG1 CG2 REMARK 470 VAL A 94 CG1 CG2 REMARK 470 LYS B 37 CG CD CE NZ REMARK 470 LYS B 67 CG CD CE NZ REMARK 470 GLU B 92 CG CD OE1 OE2 REMARK 470 GLU B 181 CG CD OE1 OE2 REMARK 470 VAL C 3 CG1 REMARK 470 ARG C 57 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 127 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 28 -130.68 -98.27 REMARK 500 GLU B 28 -145.86 -98.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HC4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HC4 B 301 DBREF 5Y8T A 1 182 UNP E0TW95 E0TW95_BACPZ 1 182 DBREF 5Y8T B 1 182 UNP E0TW95 E0TW95_BACPZ 1 182 DBREF 5Y8T C 1 182 UNP E0TW95 E0TW95_BACPZ 1 182 SEQADV 5Y8T GLY A -5 UNP E0TW95 EXPRESSION TAG SEQADV 5Y8T SER A -4 UNP E0TW95 EXPRESSION TAG SEQADV 5Y8T ALA A -3 UNP E0TW95 EXPRESSION TAG SEQADV 5Y8T LYS A -2 UNP E0TW95 EXPRESSION TAG SEQADV 5Y8T ASP A -1 UNP E0TW95 EXPRESSION TAG SEQADV 5Y8T PRO A 0 UNP E0TW95 EXPRESSION TAG SEQADV 5Y8T GLY B -5 UNP E0TW95 EXPRESSION TAG SEQADV 5Y8T SER B -4 UNP E0TW95 EXPRESSION TAG SEQADV 5Y8T ALA B -3 UNP E0TW95 EXPRESSION TAG SEQADV 5Y8T LYS B -2 UNP E0TW95 EXPRESSION TAG SEQADV 5Y8T ASP B -1 UNP E0TW95 EXPRESSION TAG SEQADV 5Y8T PRO B 0 UNP E0TW95 EXPRESSION TAG SEQADV 5Y8T GLY C -5 UNP E0TW95 EXPRESSION TAG SEQADV 5Y8T SER C -4 UNP E0TW95 EXPRESSION TAG SEQADV 5Y8T ALA C -3 UNP E0TW95 EXPRESSION TAG SEQADV 5Y8T LYS C -2 UNP E0TW95 EXPRESSION TAG SEQADV 5Y8T ASP C -1 UNP E0TW95 EXPRESSION TAG SEQADV 5Y8T PRO C 0 UNP E0TW95 EXPRESSION TAG SEQRES 1 A 188 GLY SER ALA LYS ASP PRO MET ARG VAL LEU LYS TYR ALA SEQRES 2 A 188 ILE LEU GLY LEU LEU ARG LYS GLY GLU LEU SER GLY TYR SEQRES 3 A 188 ASP ILE THR SER TYR PHE LYS GLU GLU LEU GLY GLN PHE SEQRES 4 A 188 TRP SER ALA LYS HIS SER GLN ILE TYR PRO GLU LEU LYS SEQRES 5 A 188 LYS LEU THR ASP GLU GLY PHE ILE THR PHE ARG THR THR SEQRES 6 A 188 ILE GLN GLY THR LYS LEU GLU LYS LYS MET TYR THR LEU SEQRES 7 A 188 THR ASP SER GLY LYS GLN GLU LEU HIS ASP TRP LEU ILE SEQRES 8 A 188 ARG HIS GLN PRO ILE PRO GLU THR VAL LYS ASP GLU PHE SEQRES 9 A 188 MET LEU LYS ALA TYR PHE ILE SER SER LEU SER ARG GLN SEQRES 10 A 188 GLU ALA SER ASP LEU PHE THR ASP GLN LEU LEU LYS ARG SEQRES 11 A 188 LYS ALA LYS LEU SER ASP LEU GLN GLY SER TYR GLU LYS SEQRES 12 A 188 LEU MET ALA SER ALA GLU PRO MET SER PHE SER SER PRO SEQRES 13 A 188 ASP PHE GLY HIS TYR LEU VAL LEU THR LYS ALA LEU GLU SEQRES 14 A 188 ARG GLU LYS ASN TYR VAL SER TRP LEU GLU SER ILE LEU SEQRES 15 A 188 ALA MET ILE ASP GLU ASP SEQRES 1 B 188 GLY SER ALA LYS ASP PRO MET ARG VAL LEU LYS TYR ALA SEQRES 2 B 188 ILE LEU GLY LEU LEU ARG LYS GLY GLU LEU SER GLY TYR SEQRES 3 B 188 ASP ILE THR SER TYR PHE LYS GLU GLU LEU GLY GLN PHE SEQRES 4 B 188 TRP SER ALA LYS HIS SER GLN ILE TYR PRO GLU LEU LYS SEQRES 5 B 188 LYS LEU THR ASP GLU GLY PHE ILE THR PHE ARG THR THR SEQRES 6 B 188 ILE GLN GLY THR LYS LEU GLU LYS LYS MET TYR THR LEU SEQRES 7 B 188 THR ASP SER GLY LYS GLN GLU LEU HIS ASP TRP LEU ILE SEQRES 8 B 188 ARG HIS GLN PRO ILE PRO GLU THR VAL LYS ASP GLU PHE SEQRES 9 B 188 MET LEU LYS ALA TYR PHE ILE SER SER LEU SER ARG GLN SEQRES 10 B 188 GLU ALA SER ASP LEU PHE THR ASP GLN LEU LEU LYS ARG SEQRES 11 B 188 LYS ALA LYS LEU SER ASP LEU GLN GLY SER TYR GLU LYS SEQRES 12 B 188 LEU MET ALA SER ALA GLU PRO MET SER PHE SER SER PRO SEQRES 13 B 188 ASP PHE GLY HIS TYR LEU VAL LEU THR LYS ALA LEU GLU SEQRES 14 B 188 ARG GLU LYS ASN TYR VAL SER TRP LEU GLU SER ILE LEU SEQRES 15 B 188 ALA MET ILE ASP GLU ASP SEQRES 1 C 188 GLY SER ALA LYS ASP PRO MET ARG VAL LEU LYS TYR ALA SEQRES 2 C 188 ILE LEU GLY LEU LEU ARG LYS GLY GLU LEU SER GLY TYR SEQRES 3 C 188 ASP ILE THR SER TYR PHE LYS GLU GLU LEU GLY GLN PHE SEQRES 4 C 188 TRP SER ALA LYS HIS SER GLN ILE TYR PRO GLU LEU LYS SEQRES 5 C 188 LYS LEU THR ASP GLU GLY PHE ILE THR PHE ARG THR THR SEQRES 6 C 188 ILE GLN GLY THR LYS LEU GLU LYS LYS MET TYR THR LEU SEQRES 7 C 188 THR ASP SER GLY LYS GLN GLU LEU HIS ASP TRP LEU ILE SEQRES 8 C 188 ARG HIS GLN PRO ILE PRO GLU THR VAL LYS ASP GLU PHE SEQRES 9 C 188 MET LEU LYS ALA TYR PHE ILE SER SER LEU SER ARG GLN SEQRES 10 C 188 GLU ALA SER ASP LEU PHE THR ASP GLN LEU LEU LYS ARG SEQRES 11 C 188 LYS ALA LYS LEU SER ASP LEU GLN GLY SER TYR GLU LYS SEQRES 12 C 188 LEU MET ALA SER ALA GLU PRO MET SER PHE SER SER PRO SEQRES 13 C 188 ASP PHE GLY HIS TYR LEU VAL LEU THR LYS ALA LEU GLU SEQRES 14 C 188 ARG GLU LYS ASN TYR VAL SER TRP LEU GLU SER ILE LEU SEQRES 15 C 188 ALA MET ILE ASP GLU ASP HET HC4 A 301 12 HET HC4 B 301 12 HETNAM HC4 4'-HYDROXYCINNAMIC ACID HETSYN HC4 PARA-COUMARIC ACID FORMUL 4 HC4 2(C9 H8 O3) FORMUL 6 HOH *304(H2 O) HELIX 1 AA1 LEU A 4 LEU A 12 1 9 HELIX 2 AA2 ARG A 13 GLY A 15 5 3 HELIX 3 AA3 SER A 18 GLU A 28 1 11 HELIX 4 AA4 GLU A 29 TRP A 34 1 6 HELIX 5 AA5 LYS A 37 GLU A 51 1 15 HELIX 6 AA6 THR A 73 ARG A 86 1 14 HELIX 7 AA7 ASP A 96 PHE A 104 1 9 HELIX 8 AA8 ILE A 105 LEU A 108 5 4 HELIX 9 AA9 SER A 109 ALA A 140 1 32 HELIX 10 AB1 ASP A 151 ASP A 180 1 30 HELIX 11 AB2 LEU B 4 LEU B 12 1 9 HELIX 12 AB3 ARG B 13 GLY B 15 5 3 HELIX 13 AB4 GLY B 19 LYS B 27 1 9 HELIX 14 AB5 GLU B 29 TRP B 34 1 6 HELIX 15 AB6 LYS B 37 SER B 39 5 3 HELIX 16 AB7 GLN B 40 GLU B 51 1 12 HELIX 17 AB8 THR B 73 ARG B 86 1 14 HELIX 18 AB9 ASP B 96 PHE B 104 1 9 HELIX 19 AC1 ILE B 105 LEU B 108 5 4 HELIX 20 AC2 SER B 109 ALA B 140 1 32 HELIX 21 AC3 ASP B 151 GLU B 181 1 31 HELIX 22 AC4 LEU C 4 LEU C 12 1 9 HELIX 23 AC5 GLY C 19 LEU C 30 1 12 HELIX 24 AC6 LYS C 37 GLU C 51 1 15 HELIX 25 AC7 THR C 73 ARG C 86 1 14 HELIX 26 AC8 ASP C 96 PHE C 104 1 9 HELIX 27 AC9 ILE C 105 LEU C 108 5 4 HELIX 28 AD1 SER C 109 ALA C 140 1 32 HELIX 29 AD2 ASP C 151 ASP C 180 1 30 SHEET 1 AA1 3 LEU B 17 SER B 18 0 SHEET 2 AA1 3 MET B 69 LEU B 72 -1 O TYR B 70 N LEU B 17 SHEET 3 AA1 3 ILE B 54 ARG B 57 -1 N ARG B 57 O MET B 69 SHEET 1 AA2 3 LEU C 17 SER C 18 0 SHEET 2 AA2 3 MET C 69 LEU C 72 -1 O TYR C 70 N LEU C 17 SHEET 3 AA2 3 ILE C 54 PHE C 56 -1 N THR C 55 O THR C 71 SITE 1 AC1 8 GLN A 32 PHE A 33 LYS A 127 LEU A 131 SITE 2 AC1 8 HIS A 154 ALA A 161 ARG A 164 HOH A 405 SITE 1 AC2 10 GLU B 29 GLN B 32 PHE B 33 LYS B 127 SITE 2 AC2 10 LEU B 131 HIS B 154 ALA B 161 ARG B 164 SITE 3 AC2 10 HOH B 452 THR C 93 CRYST1 93.217 125.301 79.657 90.00 113.80 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010728 0.000000 0.004731 0.00000 SCALE2 0.000000 0.007981 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013720 0.00000