data_5Y95 # _entry.id 5Y95 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.370 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5Y95 pdb_00005y95 10.2210/pdb5y95/pdb WWPDB D_1300004855 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type BMRB . 27227 unspecified PDB . 2CR7 re-refinement # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 5Y95 _pdbx_database_status.recvd_initial_deposition_date 2017-08-22 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Kurita, J.' 1 ? 'Hirao, Y.' 2 ? 'Nishimura, Y.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Bioorg. Med. Chem. Lett.' _citation.journal_id_ASTM BMCLE8 _citation.journal_id_CSD 1127 _citation.journal_id_ISSN 1464-3405 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 27 _citation.language ? _citation.page_first 4705 _citation.page_last 4709 _citation.title 'A mimetic of the mSin3-binding helix of NRSF/REST ameliorates abnormal pain behavior in chronic pain models.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.bmcl.2017.09.006 _citation.pdbx_database_id_PubMed 28927787 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ueda, H.' 1 ? primary 'Kurita, J.I.' 2 ? primary 'Neyama, H.' 3 ? primary 'Hirao, Y.' 4 ? primary 'Kouji, H.' 5 ? primary 'Mishina, T.' 6 ? primary 'Kasai, M.' 7 ? primary 'Nakano, H.' 8 ? primary 'Yoshimori, A.' 9 ? primary 'Nishimura, Y.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Paired amphipathic helix protein Sin3b' 8649.608 1 ? ? 'UNP RESIDUES 32-98' ? 2 non-polymer syn ;propan-2-yl (3R,6S,9aS)-3-ethyl-8-(3-methylbutyl)-6-(2-methylsulfanylethyl)-4,7-bis(oxidanylidene)-9,9a-dihydro-6H-pyrazino[2,1-c][1,2,4]oxadiazine-1-carboxylate ; 429.574 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Histone deacetylase complex subunit Sin3b,Transcriptional corepressor Sin3b' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GSSGSSGVHVEDALTYLDQVKIRFGSDPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFNAFLPSGPSSG _entity_poly.pdbx_seq_one_letter_code_can GSSGSSGVHVEDALTYLDQVKIRFGSDPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFNAFLPSGPSSG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 VAL n 1 9 HIS n 1 10 VAL n 1 11 GLU n 1 12 ASP n 1 13 ALA n 1 14 LEU n 1 15 THR n 1 16 TYR n 1 17 LEU n 1 18 ASP n 1 19 GLN n 1 20 VAL n 1 21 LYS n 1 22 ILE n 1 23 ARG n 1 24 PHE n 1 25 GLY n 1 26 SER n 1 27 ASP n 1 28 PRO n 1 29 ALA n 1 30 THR n 1 31 TYR n 1 32 ASN n 1 33 GLY n 1 34 PHE n 1 35 LEU n 1 36 GLU n 1 37 ILE n 1 38 MET n 1 39 LYS n 1 40 GLU n 1 41 PHE n 1 42 LYS n 1 43 SER n 1 44 GLN n 1 45 SER n 1 46 ILE n 1 47 ASP n 1 48 THR n 1 49 PRO n 1 50 GLY n 1 51 VAL n 1 52 ILE n 1 53 ARG n 1 54 ARG n 1 55 VAL n 1 56 SER n 1 57 GLN n 1 58 LEU n 1 59 PHE n 1 60 HIS n 1 61 GLU n 1 62 HIS n 1 63 PRO n 1 64 ASP n 1 65 LEU n 1 66 ILE n 1 67 VAL n 1 68 GLY n 1 69 PHE n 1 70 ASN n 1 71 ALA n 1 72 PHE n 1 73 LEU n 1 74 PRO n 1 75 SER n 1 76 GLY n 1 77 PRO n 1 78 SER n 1 79 SER n 1 80 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 80 _entity_src_gen.gene_src_common_name Mouse _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'Sin3b, Kiaa0700' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SIN3B_MOUSE _struct_ref.pdbx_db_accession Q62141 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code VHVEDALTYLDQVKIRFGSDPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFNAFLP _struct_ref.pdbx_align_begin 32 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5Y95 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 74 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q62141 _struct_ref_seq.db_align_beg 32 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 98 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 32 _struct_ref_seq.pdbx_auth_seq_align_end 98 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5Y95 GLY A 1 ? UNP Q62141 ? ? 'expression tag' 25 1 1 5Y95 SER A 2 ? UNP Q62141 ? ? 'expression tag' 26 2 1 5Y95 SER A 3 ? UNP Q62141 ? ? 'expression tag' 27 3 1 5Y95 GLY A 4 ? UNP Q62141 ? ? 'expression tag' 28 4 1 5Y95 SER A 5 ? UNP Q62141 ? ? 'expression tag' 29 5 1 5Y95 SER A 6 ? UNP Q62141 ? ? 'expression tag' 30 6 1 5Y95 GLY A 7 ? UNP Q62141 ? ? 'expression tag' 31 7 1 5Y95 SER A 75 ? UNP Q62141 ? ? 'expression tag' 99 8 1 5Y95 GLY A 76 ? UNP Q62141 ? ? 'expression tag' 100 9 1 5Y95 PRO A 77 ? UNP Q62141 ? ? 'expression tag' 101 10 1 5Y95 SER A 78 ? UNP Q62141 ? ? 'expression tag' 102 11 1 5Y95 SER A 79 ? UNP Q62141 ? ? 'expression tag' 103 12 1 5Y95 GLY A 80 ? UNP Q62141 ? ? 'expression tag' 104 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 8TL non-polymer . ;propan-2-yl (3R,6S,9aS)-3-ethyl-8-(3-methylbutyl)-6-(2-methylsulfanylethyl)-4,7-bis(oxidanylidene)-9,9a-dihydro-6H-pyrazino[2,1-c][1,2,4]oxadiazine-1-carboxylate ; ? 'C20 H35 N3 O5 S' 429.574 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _pdbx_nmr_exptl.experiment_id 1 _pdbx_nmr_exptl.conditions_id 1 _pdbx_nmr_exptl.solution_id 1 _pdbx_nmr_exptl.type '2D 1H-15N HSQC' _pdbx_nmr_exptl.spectrometer_id 1 _pdbx_nmr_exptl.sample_state isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 7.2 _pdbx_nmr_exptl_sample_conditions.ionic_strength 100 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label conditions_1 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '100 uM [U-99% 15N] mSin3B, 100 mM sodium phosphate, 95% H2O/5% DMSO' _pdbx_nmr_sample_details.solvent_system '95% H2O/5% DMSO' _pdbx_nmr_sample_details.label 15N_sample _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model 'AVANCE III HD' _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 700 _pdbx_nmr_spectrometer.details ? # _pdbx_nmr_refine.details ? _pdbx_nmr_refine.entry_id 5Y95 _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 5Y95 _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 5Y95 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 refinement HADDOCK ? Bonvin 2 'chemical shift assignment' NMRView ? 'Johnson, One Moon Scientific' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5Y95 _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 5Y95 _struct.title 'Haddock model of mSIN3B PAH1 domain' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5Y95 _struct_keywords.text 'Haddock model, complex, GENE REGULATION' _struct_keywords.pdbx_keywords 'GENE REGULATION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASP A 12 ? PHE A 24 ? ASP A 36 PHE A 48 1 ? 13 HELX_P HELX_P2 AA2 ASP A 27 ? SER A 43 ? ASP A 51 SER A 67 1 ? 17 HELX_P HELX_P3 AA3 ASP A 47 ? PHE A 59 ? ASP A 71 PHE A 83 1 ? 13 HELX_P HELX_P4 AA4 HIS A 62 ? PHE A 72 ? HIS A 86 PHE A 96 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id 8TL _struct_site.pdbx_auth_seq_id 201 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 10 _struct_site.details 'binding site for residue 8TL A 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 ALA A 13 ? ALA A 37 . ? 1_555 ? 2 AC1 10 TYR A 16 ? TYR A 40 . ? 1_555 ? 3 AC1 10 LEU A 17 ? LEU A 41 . ? 1_555 ? 4 AC1 10 PHE A 34 ? PHE A 58 . ? 1_555 ? 5 AC1 10 PHE A 41 ? PHE A 65 . ? 1_555 ? 6 AC1 10 THR A 48 ? THR A 72 . ? 1_555 ? 7 AC1 10 VAL A 51 ? VAL A 75 . ? 1_555 ? 8 AC1 10 VAL A 55 ? VAL A 79 . ? 1_555 ? 9 AC1 10 PHE A 69 ? PHE A 93 . ? 1_555 ? 10 AC1 10 PHE A 72 ? PHE A 96 . ? 1_555 ? # _atom_sites.entry_id 5Y95 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 25 25 GLY GLY A . n A 1 2 SER 2 26 26 SER SER A . n A 1 3 SER 3 27 27 SER SER A . n A 1 4 GLY 4 28 28 GLY GLY A . n A 1 5 SER 5 29 29 SER SER A . n A 1 6 SER 6 30 30 SER SER A . n A 1 7 GLY 7 31 31 GLY GLY A . n A 1 8 VAL 8 32 32 VAL VAL A . n A 1 9 HIS 9 33 33 HIS HIS A . n A 1 10 VAL 10 34 34 VAL VAL A . n A 1 11 GLU 11 35 35 GLU GLU A . n A 1 12 ASP 12 36 36 ASP ASP A . n A 1 13 ALA 13 37 37 ALA ALA A . n A 1 14 LEU 14 38 38 LEU LEU A . n A 1 15 THR 15 39 39 THR THR A . n A 1 16 TYR 16 40 40 TYR TYR A . n A 1 17 LEU 17 41 41 LEU LEU A . n A 1 18 ASP 18 42 42 ASP ASP A . n A 1 19 GLN 19 43 43 GLN GLN A . n A 1 20 VAL 20 44 44 VAL VAL A . n A 1 21 LYS 21 45 45 LYS LYS A . n A 1 22 ILE 22 46 46 ILE ILE A . n A 1 23 ARG 23 47 47 ARG ARG A . n A 1 24 PHE 24 48 48 PHE PHE A . n A 1 25 GLY 25 49 49 GLY GLY A . n A 1 26 SER 26 50 50 SER SER A . n A 1 27 ASP 27 51 51 ASP ASP A . n A 1 28 PRO 28 52 52 PRO PRO A . n A 1 29 ALA 29 53 53 ALA ALA A . n A 1 30 THR 30 54 54 THR THR A . n A 1 31 TYR 31 55 55 TYR TYR A . n A 1 32 ASN 32 56 56 ASN ASN A . n A 1 33 GLY 33 57 57 GLY GLY A . n A 1 34 PHE 34 58 58 PHE PHE A . n A 1 35 LEU 35 59 59 LEU LEU A . n A 1 36 GLU 36 60 60 GLU GLU A . n A 1 37 ILE 37 61 61 ILE ILE A . n A 1 38 MET 38 62 62 MET MET A . n A 1 39 LYS 39 63 63 LYS LYS A . n A 1 40 GLU 40 64 64 GLU GLU A . n A 1 41 PHE 41 65 65 PHE PHE A . n A 1 42 LYS 42 66 66 LYS LYS A . n A 1 43 SER 43 67 67 SER SER A . n A 1 44 GLN 44 68 68 GLN GLN A . n A 1 45 SER 45 69 69 SER SER A . n A 1 46 ILE 46 70 70 ILE ILE A . n A 1 47 ASP 47 71 71 ASP ASP A . n A 1 48 THR 48 72 72 THR THR A . n A 1 49 PRO 49 73 73 PRO PRO A . n A 1 50 GLY 50 74 74 GLY GLY A . n A 1 51 VAL 51 75 75 VAL VAL A . n A 1 52 ILE 52 76 76 ILE ILE A . n A 1 53 ARG 53 77 77 ARG ARG A . n A 1 54 ARG 54 78 78 ARG ARG A . n A 1 55 VAL 55 79 79 VAL VAL A . n A 1 56 SER 56 80 80 SER SER A . n A 1 57 GLN 57 81 81 GLN GLN A . n A 1 58 LEU 58 82 82 LEU LEU A . n A 1 59 PHE 59 83 83 PHE PHE A . n A 1 60 HIS 60 84 84 HIS HIS A . n A 1 61 GLU 61 85 85 GLU GLU A . n A 1 62 HIS 62 86 86 HIS HIS A . n A 1 63 PRO 63 87 87 PRO PRO A . n A 1 64 ASP 64 88 88 ASP ASP A . n A 1 65 LEU 65 89 89 LEU LEU A . n A 1 66 ILE 66 90 90 ILE ILE A . n A 1 67 VAL 67 91 91 VAL VAL A . n A 1 68 GLY 68 92 92 GLY GLY A . n A 1 69 PHE 69 93 93 PHE PHE A . n A 1 70 ASN 70 94 94 ASN ASN A . n A 1 71 ALA 71 95 95 ALA ALA A . n A 1 72 PHE 72 96 96 PHE PHE A . n A 1 73 LEU 73 97 97 LEU LEU A . n A 1 74 PRO 74 98 98 PRO PRO A . n A 1 75 SER 75 99 99 SER SER A . n A 1 76 GLY 76 100 100 GLY GLY A . n A 1 77 PRO 77 101 101 PRO PRO A . n A 1 78 SER 78 102 102 SER SER A . n A 1 79 SER 79 103 103 SER SER A . n A 1 80 GLY 80 104 104 GLY GLY A . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id 8TL _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 201 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id 8TL _pdbx_nonpoly_scheme.auth_mon_id LIG _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 6260 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-10-04 2 'Structure model' 1 1 2017-12-06 3 'Structure model' 1 2 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' database_2 3 3 'Structure model' pdbx_database_status 4 3 'Structure model' pdbx_nmr_spectrometer # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 3 'Structure model' '_database_2.pdbx_DOI' 5 3 'Structure model' '_database_2.pdbx_database_accession' 6 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' 7 3 'Structure model' '_pdbx_nmr_spectrometer.model' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 mSin3B 100 ? uM '[U-99% 15N]' 1 'sodium phosphate' 100 ? mM 'natural abundance' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OE2 A GLU 60 ? ? HZ1 A LYS 63 ? ? 1.59 2 3 OD1 A ASP 42 ? ? HZ3 A LYS 45 ? ? 1.59 3 5 OE2 A GLU 60 ? ? HZ1 A LYS 63 ? ? 1.59 4 5 OD1 A ASP 42 ? ? HZ3 A LYS 45 ? ? 1.60 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE A 48 ? ? -106.94 44.18 2 1 ASP A 71 ? ? -110.00 -162.46 3 1 PHE A 83 ? ? -94.96 47.61 4 1 PHE A 96 ? ? -89.35 31.57 5 2 PHE A 48 ? ? -103.59 40.02 6 2 PHE A 83 ? ? -91.50 48.74 7 3 SER A 27 ? ? -101.12 73.17 8 3 ASP A 71 ? ? -136.30 -151.20 9 3 PHE A 83 ? ? -90.89 41.90 10 4 PHE A 48 ? ? -107.19 41.76 11 4 ASP A 71 ? ? -106.85 -163.25 12 5 PHE A 48 ? ? -104.27 54.65 13 5 ASP A 71 ? ? -123.12 -166.48 14 5 PHE A 83 ? ? -97.57 44.52 15 6 ASP A 71 ? ? -119.17 -158.93 16 6 PHE A 83 ? ? -101.18 45.59 17 6 PRO A 101 ? ? -79.98 39.38 18 7 ASP A 71 ? ? -107.37 -164.49 19 7 PHE A 83 ? ? -97.08 32.24 20 8 ASP A 71 ? ? -114.35 -165.55 21 8 PHE A 83 ? ? -93.11 45.27 22 8 PHE A 96 ? ? -97.26 44.50 23 9 GLU A 35 ? ? -102.60 56.75 24 9 PHE A 48 ? ? -102.35 54.03 25 9 PHE A 83 ? ? -103.82 43.77 26 10 SER A 29 ? ? -151.41 85.57 27 10 PHE A 48 ? ? -107.40 58.94 28 10 ASP A 71 ? ? -105.30 -164.35 29 10 PHE A 83 ? ? -91.29 38.90 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name ;propan-2-yl (3R,6S,9aS)-3-ethyl-8-(3-methylbutyl)-6-(2-methylsulfanylethyl)-4,7-bis(oxidanylidene)-9,9a-dihydro-6H-pyrazino[2,1-c][1,2,4]oxadiazine-1-carboxylate ; _pdbx_entity_nonpoly.comp_id 8TL # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #