HEADER HYDROLASE 26-AUG-17 5Y9P TITLE STAPHYLOCOCCUS AUREUS RNASE HII COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBONUCLEASE HII; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RNASE HII; COMPND 5 EC: 3.1.26.4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: RNHB, AYM28_06605, AYM37_06605, ERS072738_01674, SOURCE 5 ERS074020_01342, HMPREF3211_01288; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS ENDONUCLEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.HANG,M.WU,X.ZHANG REVDAT 3 22-NOV-23 5Y9P 1 REMARK REVDAT 2 12-SEP-18 5Y9P 1 JRNL REVDAT 1 01-AUG-18 5Y9P 0 JRNL AUTH T.HANG,X.ZHANG,M.WU,C.WANG,S.LING,L.XU,Q.GONG,C.TIAN, JRNL AUTH 2 X.ZHANG,J.ZANG JRNL TITL STRUCTURAL INSIGHTS INTO A NOVEL FUNCTIONAL DIMER OF JRNL TITL 2 STAPHYLOCOCCUS AUREUS RNASE HII JRNL REF BIOCHEM. BIOPHYS. RES. V. 503 1207 2018 JRNL REF 2 COMMUN. JRNL REFN ESSN 1090-2104 JRNL PMID 30005877 JRNL DOI 10.1016/J.BBRC.2018.07.026 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 15960 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.238 REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 849 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1137 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.67 REMARK 3 BIN R VALUE (WORKING SET) : 0.2650 REMARK 3 BIN FREE R VALUE SET COUNT : 60 REMARK 3 BIN FREE R VALUE : 0.3360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1619 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 91 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.51000 REMARK 3 B22 (A**2) : 0.51000 REMARK 3 B33 (A**2) : -1.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.230 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.208 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.147 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.749 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.925 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.881 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1652 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1597 ; 0.007 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2235 ; 1.365 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3670 ; 1.033 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 210 ; 6.032 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 69 ;39.354 ;25.217 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 280 ;15.424 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;18.190 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 263 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1854 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 348 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 846 ; 3.665 ; 3.885 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 845 ; 3.651 ; 3.881 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1054 ; 4.927 ; 5.802 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1055 ; 4.925 ; 5.806 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 806 ; 4.593 ; 4.259 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 806 ; 4.592 ; 4.259 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1182 ; 6.411 ; 6.236 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7244 ; 8.398 ;37.095 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7244 ; 8.398 ;37.094 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5Y9P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1300004899. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-AUG-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16871 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 57.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 14.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2ETJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15M AMMONIUM SULFATE, 0.1M MES, REMARK 280 15%(W/V) PEG 4000, PH 6.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.63000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 30.91500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 30.91500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 122.44500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 30.91500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 30.91500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.81500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 30.91500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 30.91500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 122.44500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 30.91500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 30.91500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 40.81500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 81.63000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 451 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 459 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 LEU A 3 REMARK 465 THR A 4 REMARK 465 ILE A 5 REMARK 465 LYS A 6 REMARK 465 GLU A 7 REMARK 465 VAL A 8 REMARK 465 THR A 9 REMARK 465 GLN A 10 REMARK 465 LEU A 11 REMARK 465 ILE A 12 REMARK 465 ASN A 13 REMARK 465 ALA A 14 REMARK 465 VAL A 15 REMARK 465 ASN A 16 REMARK 465 THR A 17 REMARK 465 ILE A 18 REMARK 465 GLU A 19 REMARK 465 GLU A 20 REMARK 465 LEU A 21 REMARK 465 GLU A 22 REMARK 465 ASN A 23 REMARK 465 HIS A 24 REMARK 465 GLU A 25 REMARK 465 CYS A 26 REMARK 465 PHE A 27 REMARK 465 LEU A 28 REMARK 465 ASP A 29 REMARK 465 GLU A 30 REMARK 465 ARG A 31 REMARK 465 LYS A 32 REMARK 465 GLY A 33 REMARK 465 VAL A 34 REMARK 465 GLN A 35 REMARK 465 ASN A 36 REMARK 465 ALA A 37 REMARK 465 ILE A 38 REMARK 465 ALA A 39 REMARK 465 ARG A 40 REMARK 465 ARG A 41 REMARK 465 ARG A 42 REMARK 465 LYS A 43 REMARK 465 ASP A 106 REMARK 465 ASP A 107 REMARK 465 SER A 108 REMARK 465 LYS A 109 REMARK 465 LYS A 110 REMARK 465 HIS A 261 REMARK 465 HIS A 262 REMARK 465 HIS A 263 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 47 CG CD CE NZ REMARK 470 LYS A 54 CE NZ REMARK 470 GLU A 68 CG CD OE1 OE2 REMARK 470 VAL A 111 CG1 CG2 REMARK 470 GLU A 138 CG CD OE1 OE2 REMARK 470 LYS A 147 CE NZ REMARK 470 ASP A 175 CG OD1 OD2 REMARK 470 LYS A 222 CG CD CE NZ REMARK 470 LYS A 242 CD CE NZ REMARK 470 HIS A 259 CG ND1 CD2 CE1 NE2 REMARK 470 HIS A 260 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N ILE A 74 O1 GOL A 302 2.05 REMARK 500 OE2 GLU A 217 O HOH A 401 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 46 -72.56 -79.20 REMARK 500 ASN A 99 31.85 -93.41 REMARK 500 ASN A 101 51.70 -154.99 REMARK 500 ASN A 144 160.60 73.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 302 DBREF1 5Y9P A 1 255 UNP A0A0D6HS53_STAAU DBREF2 5Y9P A A0A0D6HS53 1 255 SEQADV 5Y9P MET A -2 UNP A0A0D6HS5 INITIATING METHIONINE SEQADV 5Y9P GLY A -1 UNP A0A0D6HS5 EXPRESSION TAG SEQADV 5Y9P SER A 0 UNP A0A0D6HS5 EXPRESSION TAG SEQADV 5Y9P LEU A 256 UNP A0A0D6HS5 EXPRESSION TAG SEQADV 5Y9P GLU A 257 UNP A0A0D6HS5 EXPRESSION TAG SEQADV 5Y9P HIS A 258 UNP A0A0D6HS5 EXPRESSION TAG SEQADV 5Y9P HIS A 259 UNP A0A0D6HS5 EXPRESSION TAG SEQADV 5Y9P HIS A 260 UNP A0A0D6HS5 EXPRESSION TAG SEQADV 5Y9P HIS A 261 UNP A0A0D6HS5 EXPRESSION TAG SEQADV 5Y9P HIS A 262 UNP A0A0D6HS5 EXPRESSION TAG SEQADV 5Y9P HIS A 263 UNP A0A0D6HS5 EXPRESSION TAG SEQRES 1 A 266 MET GLY SER MET THR LEU THR ILE LYS GLU VAL THR GLN SEQRES 2 A 266 LEU ILE ASN ALA VAL ASN THR ILE GLU GLU LEU GLU ASN SEQRES 3 A 266 HIS GLU CYS PHE LEU ASP GLU ARG LYS GLY VAL GLN ASN SEQRES 4 A 266 ALA ILE ALA ARG ARG ARG LYS ALA LEU GLU LYS GLU GLN SEQRES 5 A 266 ALA LEU LYS GLU LYS TYR VAL GLU MET THR TYR PHE GLU SEQRES 6 A 266 ASN GLU ILE LEU LYS GLU HIS PRO ASN ALA ILE ILE CYS SEQRES 7 A 266 GLY ILE ASP GLU VAL GLY ARG GLY PRO LEU ALA GLY PRO SEQRES 8 A 266 VAL VAL ALA CYS ALA THR ILE LEU ASN SER ASN HIS ASN SEQRES 9 A 266 TYR LEU GLY LEU ASP ASP SER LYS LYS VAL PRO VAL THR SEQRES 10 A 266 LYS ARG LEU GLU LEU ASN GLU ALA LEU LYS ASN GLU VAL SEQRES 11 A 266 THR ALA PHE ALA TYR GLY ILE ALA THR ALA GLU GLU ILE SEQRES 12 A 266 ASP GLU PHE ASN ILE TYR LYS ALA THR GLN ILE ALA MET SEQRES 13 A 266 GLN ARG ALA ILE ASP GLY LEU SER VAL GLN PRO THR HIS SEQRES 14 A 266 LEU LEU ILE ASP ALA MET THR LEU ASP ASN ALA LEU PRO SEQRES 15 A 266 GLN VAL SER LEU ILE LYS GLY ASP ALA ARG SER VAL SER SEQRES 16 A 266 ILE ALA ALA ALA SER ILE MET ALA LYS VAL PHE ARG ASP SEQRES 17 A 266 ASP TYR MET THR GLN LEU SER LYS ASP TYR PRO GLU TYR SEQRES 18 A 266 GLY PHE GLU LYS ASN ALA GLY TYR GLY THR LYS GLN HIS SEQRES 19 A 266 LEU LEU ALA ILE ASP ASP ILE GLY ILE MET LYS GLU HIS SEQRES 20 A 266 ARG LYS SER PHE GLU PRO ILE LYS SER LEU LEU LEU GLU SEQRES 21 A 266 HIS HIS HIS HIS HIS HIS HET GOL A 301 6 HET GOL A 302 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL 2(C3 H8 O3) FORMUL 4 HOH *91(H2 O) HELIX 1 AA1 ALA A 44 MET A 58 1 15 HELIX 2 AA2 THR A 59 HIS A 69 1 11 HELIX 3 AA3 PRO A 112 VAL A 127 1 16 HELIX 4 AA4 THR A 136 ASN A 144 1 9 HELIX 5 AA5 ASN A 144 GLY A 159 1 16 HELIX 6 AA6 LYS A 185 SER A 190 1 6 HELIX 7 AA7 SER A 190 TYR A 215 1 26 HELIX 8 AA8 PRO A 216 TYR A 218 5 3 HELIX 9 AA9 GLY A 219 ALA A 224 1 6 HELIX 10 AB1 THR A 228 GLY A 239 1 12 HELIX 11 AB2 PRO A 250 HIS A 260 1 11 SHEET 1 AA1 5 ALA A 129 ALA A 135 0 SHEET 2 AA1 5 VAL A 89 ILE A 95 -1 N ALA A 91 O GLY A 133 SHEET 3 AA1 5 ILE A 74 VAL A 80 -1 N GLY A 76 O THR A 94 SHEET 4 AA1 5 HIS A 166 ASP A 170 1 O LEU A 168 N CYS A 75 SHEET 5 AA1 5 GLN A 180 LEU A 183 1 O LEU A 183 N ILE A 169 CISPEP 1 GLU A 249 PRO A 250 0 7.99 SITE 1 AC1 5 ALA A 129 PHE A 130 LEU A 160 SER A 161 SITE 2 AC1 5 HOH A 420 SITE 1 AC2 6 ALA A 72 ILE A 73 ILE A 74 LEU A 96 SITE 2 AC2 6 SER A 98 HOH A 410 CRYST1 61.830 61.830 163.260 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016173 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016173 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006125 0.00000