HEADER TRANSCRIPTION 27-AUG-17 5Y9Q TITLE CRYSTAL STRUCTURE OF THE CCPE REGULATORY DOMAIN AT 1.95 ANGSTROM FROM TITLE 2 STAPHYLOCOCCUS AUREUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBON CATABOLITE RESPONSIVE REGULATOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 91-288; COMPND 5 SYNONYM: LYSR FAMILY TRANSCRIPTIONAL REGULATOR; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: THE LAST TWO RESIDUES WAS REMOVED BECAUSE OF DISORDER COMPND 8 AT C-TERMINAL SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: OXYR, BMF23_07630, ERS073071_00913, ERS073583_00871; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS REGULATORY DOMAIN, DIMER, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR J.CHEN,L.WANG,F.SHANG,Y.XU REVDAT 3 27-MAR-24 5Y9Q 1 REMARK REVDAT 2 12-DEC-18 5Y9Q 1 JRNL REVDAT 1 06-SEP-17 5Y9Q 0 JRNL AUTH J.CHEN,F.SHANG,L.WANG,L.ZOU,T.BU,L.JIN,Y.DONG,N.C.HA,C.QUAN, JRNL AUTH 2 K.H.NAM,Y.XU JRNL TITL STRUCTURAL AND BIOCHEMICAL ANALYSIS OF THE JRNL TITL 2 CITRATE-RESPONSIVE MECHANISM OF THE REGULATORY DOMAIN OF JRNL TITL 3 CATABOLITE CONTROL PROTEIN E FROM STAPHYLOCOCCUS AUREUS JRNL REF BIOCHEMISTRY V. 57 6054 2018 JRNL REFN ISSN 1520-4995 JRNL PMID 30252448 JRNL DOI 10.1021/ACS.BIOCHEM.8B00671 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 3 NUMBER OF REFLECTIONS : 75836 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 3766 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.2092 - 5.8372 0.78 2276 116 0.2525 0.2425 REMARK 3 2 5.8372 - 4.6416 0.96 2797 152 0.1504 0.1966 REMARK 3 3 4.6416 - 4.0573 0.98 2891 148 0.1402 0.1524 REMARK 3 4 4.0573 - 3.6874 1.00 2908 152 0.1431 0.1643 REMARK 3 5 3.6874 - 3.4237 1.00 2961 156 0.1523 0.1636 REMARK 3 6 3.4237 - 3.2223 1.00 2921 152 0.1617 0.2295 REMARK 3 7 3.2223 - 3.0612 1.00 2883 152 0.1680 0.1901 REMARK 3 8 3.0612 - 2.9281 1.00 2924 154 0.1784 0.2401 REMARK 3 9 2.9281 - 2.8155 1.00 2883 150 0.1738 0.1862 REMARK 3 10 2.8155 - 2.7184 1.00 2923 150 0.1756 0.2766 REMARK 3 11 2.7184 - 2.6335 1.00 2923 156 0.1721 0.2760 REMARK 3 12 2.6335 - 2.5583 0.99 2896 156 0.2005 0.2725 REMARK 3 13 2.5583 - 2.4910 0.99 2908 150 0.1862 0.2378 REMARK 3 14 2.4910 - 2.4303 0.99 2912 151 0.1799 0.2895 REMARK 3 15 2.4303 - 2.3751 0.99 2797 149 0.1818 0.2404 REMARK 3 16 2.3751 - 2.3246 0.98 2875 153 0.1855 0.2686 REMARK 3 17 2.3246 - 2.2781 0.97 2875 139 0.1888 0.2165 REMARK 3 18 2.2781 - 2.2351 0.96 2805 146 0.1929 0.2325 REMARK 3 19 2.2351 - 2.1952 0.94 2763 145 0.1967 0.2971 REMARK 3 20 2.1952 - 2.1580 0.93 2723 138 0.1899 0.2757 REMARK 3 21 2.1580 - 2.1232 0.91 2635 132 0.2022 0.2447 REMARK 3 22 2.1232 - 2.0906 0.87 2561 133 0.2072 0.2450 REMARK 3 23 2.0906 - 2.0598 0.84 2453 137 0.2111 0.2422 REMARK 3 24 2.0598 - 2.0308 0.78 2279 127 0.2171 0.2503 REMARK 3 25 2.0308 - 2.0034 0.74 2125 110 0.2265 0.2264 REMARK 3 26 2.0034 - 1.9774 0.62 1830 103 0.2255 0.3016 REMARK 3 27 1.9774 - 1.9527 0.46 1343 59 0.2352 0.2507 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.980 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 3264 REMARK 3 ANGLE : 1.378 4438 REMARK 3 CHIRALITY : 0.058 502 REMARK 3 PLANARITY : 0.007 582 REMARK 3 DIHEDRAL : 17.551 1220 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5Y9Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1300004897. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9826 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75836 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 8.300 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 2.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.30 REMARK 200 R MERGE FOR SHELL (I) : 0.10400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4 M SODIUM FORMATE, PH 8.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 55.83350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.23549 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 41.04000 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 55.83350 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 32.23549 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 41.04000 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 55.83350 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 32.23549 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 41.04000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 64.47097 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 82.08000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 64.47097 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 82.08000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 64.47097 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 82.08000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 197 REMARK 465 ALA A 198 REMARK 465 LYS B 197 REMARK 465 ALA B 198 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE21 GLN B 195 O HOH B 201 1.34 REMARK 500 HH TYR B 98 O HOH B 209 1.48 REMARK 500 HD22 ASN A 24 O HOH A 211 1.58 REMARK 500 O HOH B 356 O HOH B 373 1.84 REMARK 500 O HOH B 288 O HOH B 317 1.86 REMARK 500 O HOH B 372 O HOH B 375 1.93 REMARK 500 O HOH B 220 O HOH B 359 1.95 REMARK 500 OD2 ASP A 82 O HOH A 201 1.99 REMARK 500 O HOH A 268 O HOH A 322 2.00 REMARK 500 O HOH A 279 O HOH B 326 2.06 REMARK 500 O HOH B 322 O HOH B 343 2.07 REMARK 500 O LEU A 110 O HOH A 202 2.07 REMARK 500 O HOH A 263 O HOH A 366 2.07 REMARK 500 NE2 GLN B 195 O HOH B 201 2.08 REMARK 500 O LEU B 110 O HOH B 202 2.09 REMARK 500 O HOH B 278 O HOH B 312 2.09 REMARK 500 ND2 ASN A 57 O HOH A 203 2.09 REMARK 500 O HOH A 254 O HOH A 336 2.10 REMARK 500 O HOH A 353 O HOH A 378 2.11 REMARK 500 O HOH B 294 O HOH B 361 2.12 REMARK 500 OE1 GLU B 40 O HOH B 203 2.12 REMARK 500 O HOH A 293 O HOH A 335 2.12 REMARK 500 O HOH A 234 O HOH A 314 2.14 REMARK 500 O HOH B 257 O HOH B 356 2.14 REMARK 500 O HOH A 345 O HOH A 361 2.14 REMARK 500 O HIS A 115 O HOH A 204 2.15 REMARK 500 O PRO B 196 O HOH B 204 2.17 REMARK 500 O HIS B 115 O HOH B 205 2.17 REMARK 500 OD2 ASP B 121 O HOH B 206 2.18 REMARK 500 O HOH A 369 O HOH A 376 2.18 REMARK 500 O HOH B 267 O HOH B 366 2.18 REMARK 500 O HOH A 223 O HOH A 229 2.19 REMARK 500 O HOH A 293 O HOH A 302 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 299 O HOH B 305 9444 1.73 REMARK 500 O HOH A 311 O HOH B 305 9444 1.93 REMARK 500 O HOH B 257 O HOH B 321 3555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 55 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 61 -1.88 73.32 REMARK 500 ARG A 80 44.51 -167.64 REMARK 500 ARG A 81 -31.33 -175.71 REMARK 500 ASP A 82 3.16 161.79 REMARK 500 ASP A 95 165.53 179.58 REMARK 500 LYS B 78 1.44 -57.95 REMARK 500 ASP B 95 164.64 179.27 REMARK 500 GLU B 111 40.50 -101.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 379 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH B 383 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH B 384 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH B 385 DISTANCE = 6.99 ANGSTROMS DBREF1 5Y9Q A 1 198 UNP A0A122PQF6_STAAU DBREF2 5Y9Q A A0A122PQF6 91 288 DBREF1 5Y9Q B 1 198 UNP A0A122PQF6_STAAU DBREF2 5Y9Q B A0A122PQF6 91 288 SEQRES 1 A 198 GLY THR ILE SER ILE GLY CYS SER SER LEU ILE GLY GLN SEQRES 2 A 198 THR LEU LEU PRO GLU VAL LEU SER LEU TYR ASN ALA GLN SEQRES 3 A 198 PHE PRO ASN VAL GLU ILE GLN VAL GLN VAL GLY SER THR SEQRES 4 A 198 GLU GLN ILE LYS ALA ASN HIS ARG ASP TYR HIS VAL MET SEQRES 5 A 198 ILE THR ARG GLY ASN LYS VAL MET ASN LEU ALA ASN THR SEQRES 6 A 198 HIS LEU PHE ASN ASP ASP HIS TYR PHE ILE PHE PRO LYS SEQRES 7 A 198 ASN ARG ARG ASP ASP VAL THR LYS LEU PRO PHE ILE GLU SEQRES 8 A 198 PHE GLN ALA ASP PRO ILE TYR ILE ASN GLN ILE LYS GLN SEQRES 9 A 198 TRP TYR ASN ASP ASN LEU GLU GLN ASP TYR HIS ALA THR SEQRES 10 A 198 ILE THR VAL ASP GLN VAL ALA THR CYS LYS GLU MET LEU SEQRES 11 A 198 ILE SER GLY VAL GLY VAL THR ILE LEU PRO GLU ILE MET SEQRES 12 A 198 MET LYS ASN ILE SER LYS GLU GLN PHE GLU PHE GLU LYS SEQRES 13 A 198 VAL GLU ILE ASP ASN GLU PRO LEU ILE ARG SER THR PHE SEQRES 14 A 198 MET SER TYR ASP PRO SER MET LEU GLN LEU PRO GLN VAL SEQRES 15 A 198 ASP SER PHE VAL ASN LEU MET ALA SER PHE VAL GLU GLN SEQRES 16 A 198 PRO LYS ALA SEQRES 1 B 198 GLY THR ILE SER ILE GLY CYS SER SER LEU ILE GLY GLN SEQRES 2 B 198 THR LEU LEU PRO GLU VAL LEU SER LEU TYR ASN ALA GLN SEQRES 3 B 198 PHE PRO ASN VAL GLU ILE GLN VAL GLN VAL GLY SER THR SEQRES 4 B 198 GLU GLN ILE LYS ALA ASN HIS ARG ASP TYR HIS VAL MET SEQRES 5 B 198 ILE THR ARG GLY ASN LYS VAL MET ASN LEU ALA ASN THR SEQRES 6 B 198 HIS LEU PHE ASN ASP ASP HIS TYR PHE ILE PHE PRO LYS SEQRES 7 B 198 ASN ARG ARG ASP ASP VAL THR LYS LEU PRO PHE ILE GLU SEQRES 8 B 198 PHE GLN ALA ASP PRO ILE TYR ILE ASN GLN ILE LYS GLN SEQRES 9 B 198 TRP TYR ASN ASP ASN LEU GLU GLN ASP TYR HIS ALA THR SEQRES 10 B 198 ILE THR VAL ASP GLN VAL ALA THR CYS LYS GLU MET LEU SEQRES 11 B 198 ILE SER GLY VAL GLY VAL THR ILE LEU PRO GLU ILE MET SEQRES 12 B 198 MET LYS ASN ILE SER LYS GLU GLN PHE GLU PHE GLU LYS SEQRES 13 B 198 VAL GLU ILE ASP ASN GLU PRO LEU ILE ARG SER THR PHE SEQRES 14 B 198 MET SER TYR ASP PRO SER MET LEU GLN LEU PRO GLN VAL SEQRES 15 B 198 ASP SER PHE VAL ASN LEU MET ALA SER PHE VAL GLU GLN SEQRES 16 B 198 PRO LYS ALA FORMUL 3 HOH *364(H2 O) HELIX 1 AA1 SER A 8 LEU A 15 1 8 HELIX 2 AA2 LEU A 15 PHE A 27 1 13 HELIX 3 AA3 SER A 38 ASN A 45 1 8 HELIX 4 AA4 HIS A 46 TYR A 49 5 4 HELIX 5 AA5 ASP A 83 LEU A 87 5 5 HELIX 6 AA6 ASP A 95 LEU A 110 1 16 HELIX 7 AA7 GLN A 122 SER A 132 1 11 HELIX 8 AA8 ILE A 142 MET A 144 5 3 HELIX 9 AA9 ASP A 173 GLN A 178 5 6 HELIX 10 AB1 LEU A 179 VAL A 193 1 15 HELIX 11 AB2 SER B 8 LEU B 15 1 8 HELIX 12 AB3 LEU B 15 PHE B 27 1 13 HELIX 13 AB4 SER B 38 ASN B 45 1 8 HELIX 14 AB5 HIS B 46 TYR B 49 5 4 HELIX 15 AB6 ASP B 82 LEU B 87 5 6 HELIX 16 AB7 ASP B 95 LEU B 110 1 16 HELIX 17 AB8 GLN B 122 SER B 132 1 11 HELIX 18 AB9 ILE B 142 MET B 144 5 3 HELIX 19 AC1 ASP B 173 GLN B 178 5 6 HELIX 20 AC2 LEU B 179 VAL B 193 1 15 SHEET 1 AA111 PHE A 152 LYS A 156 0 SHEET 2 AA111 ALA A 63 PRO A 77 -1 N PHE A 74 O GLU A 155 SHEET 3 AA111 VAL A 136 PRO A 140 -1 O THR A 137 N ILE A 75 SHEET 4 AA111 PHE A 89 PHE A 92 1 N ILE A 90 O VAL A 136 SHEET 5 AA111 ALA A 116 VAL A 120 1 O ILE A 118 N GLU A 91 SHEET 6 AA111 GLU B 31 VAL B 36 1 O VAL B 34 N THR A 119 SHEET 7 AA111 THR B 2 CYS B 7 1 N ILE B 5 O GLN B 33 SHEET 8 AA111 VAL B 51 ARG B 55 1 O VAL B 51 N GLY B 6 SHEET 9 AA111 ILE B 165 TYR B 172 -1 O PHE B 169 N THR B 54 SHEET 10 AA111 ALA B 63 PRO B 77 -1 N LEU B 67 O THR B 168 SHEET 11 AA111 PHE B 152 LYS B 156 -1 O GLU B 155 N PHE B 74 SHEET 1 AA211 PHE A 152 LYS A 156 0 SHEET 2 AA211 ALA A 63 PRO A 77 -1 N PHE A 74 O GLU A 155 SHEET 3 AA211 ILE A 165 TYR A 172 -1 O THR A 168 N LEU A 67 SHEET 4 AA211 VAL A 51 ARG A 55 -1 N THR A 54 O PHE A 169 SHEET 5 AA211 THR A 2 CYS A 7 1 N GLY A 6 O VAL A 51 SHEET 6 AA211 GLU A 31 VAL A 36 1 O GLN A 33 N ILE A 3 SHEET 7 AA211 ALA B 116 VAL B 120 1 O THR B 119 N VAL A 34 SHEET 8 AA211 PHE B 89 PHE B 92 1 N GLU B 91 O ILE B 118 SHEET 9 AA211 VAL B 136 PRO B 140 1 O VAL B 136 N ILE B 90 SHEET 10 AA211 ALA B 63 PRO B 77 -1 N ILE B 75 O THR B 137 SHEET 11 AA211 PHE B 152 LYS B 156 -1 O GLU B 155 N PHE B 74 SHEET 1 AA3 2 GLU A 158 ILE A 159 0 SHEET 2 AA3 2 GLU A 162 PRO A 163 -1 O GLU A 162 N ILE A 159 SHEET 1 AA4 2 GLU B 158 ILE B 159 0 SHEET 2 AA4 2 GLU B 162 PRO B 163 -1 O GLU B 162 N ILE B 159 CISPEP 1 ARG A 80 ARG A 81 0 4.58 CISPEP 2 ASN B 79 ARG B 80 0 -6.58 CRYST1 111.667 111.667 123.120 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008955 0.005170 0.000000 0.00000 SCALE2 0.000000 0.010341 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008122 0.00000