HEADER TRANSFERASE 28-AUG-17 5Y9W TITLE CRYSTAL 1 FOR ATLURE1.2-ATPRK6LRR COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLLEN RECEPTOR-LIKE KINASE 6; COMPND 3 CHAIN: B, A; COMPND 4 SYNONYM: ATPRK6; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PROTEIN LURE 1.2; COMPND 8 CHAIN: C; COMPND 9 SYNONYM: ATLURE1.2,CYSTEINE-RICH PEPTIDE 810_1.2,CRP810_1.2,DEFENSIN- COMPND 10 LIKE PROTEIN 213; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: PRK6, AT5G20690, T1M15.90; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 10 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 11 ORGANISM_TAXID: 3702; SOURCE 12 GENE: LURE1.2, CRP810_1.2, AT5G43510, MWF20.23; SOURCE 13 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 7111 KEYWDS CYSTEINE-RICH PEPTIDE, LEUCINE-RICH REPEAT RECEPTOR KINASE, RECEPTOR- KEYWDS 2 LIGAND COMPLEX, POLLEN TUBE GUIDANCE, PLANT PROTEIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.CHAI,X.ZHANG REVDAT 2 22-NOV-23 5Y9W 1 REMARK REVDAT 1 27-DEC-17 5Y9W 0 JRNL AUTH X.ZHANG,W.LIU,T.T.NAGAE,H.TAKEUCHI,H.ZHANG,Z.HAN, JRNL AUTH 2 T.HIGASHIYAMA,J.CHAI JRNL TITL STRUCTURAL BASIS FOR RECEPTOR RECOGNITION OF POLLEN TUBE JRNL TITL 2 ATTRACTION PEPTIDES. JRNL REF NAT COMMUN V. 8 1331 2017 JRNL REFN ESSN 2041-1723 JRNL PMID 29109411 JRNL DOI 10.1038/S41467-017-01323-8 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 56074 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2845 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.3892 - 5.0097 0.98 2797 136 0.2204 0.2622 REMARK 3 2 5.0097 - 3.9781 0.98 2696 158 0.1724 0.2064 REMARK 3 3 3.9781 - 3.4757 0.99 2709 138 0.1851 0.2321 REMARK 3 4 3.4757 - 3.1582 1.00 2740 140 0.2028 0.2432 REMARK 3 5 3.1582 - 2.9319 0.99 2713 143 0.2213 0.2485 REMARK 3 6 2.9319 - 2.7591 0.98 2644 150 0.2138 0.2530 REMARK 3 7 2.7591 - 2.6210 0.97 2651 152 0.2220 0.2456 REMARK 3 8 2.6210 - 2.5069 0.99 2665 151 0.2137 0.2790 REMARK 3 9 2.5069 - 2.4104 0.99 2655 145 0.2114 0.2455 REMARK 3 10 2.4104 - 2.3273 0.99 2718 119 0.2074 0.2327 REMARK 3 11 2.3273 - 2.2545 0.99 2666 136 0.1970 0.2310 REMARK 3 12 2.2545 - 2.1901 0.98 2661 145 0.1991 0.2487 REMARK 3 13 2.1901 - 2.1324 0.96 2593 132 0.2032 0.2182 REMARK 3 14 2.1324 - 2.0804 0.98 2567 171 0.2059 0.2387 REMARK 3 15 2.0804 - 2.0331 0.97 2646 140 0.2011 0.2311 REMARK 3 16 2.0331 - 1.9899 0.98 2672 127 0.2076 0.2328 REMARK 3 17 1.9899 - 1.9501 0.99 2651 131 0.2064 0.2360 REMARK 3 18 1.9501 - 1.9133 0.97 2653 149 0.2346 0.2602 REMARK 3 19 1.9133 - 1.8791 0.98 2598 138 0.2457 0.2878 REMARK 3 20 1.8791 - 1.8472 0.94 2534 144 0.2510 0.2783 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.860 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3744 REMARK 3 ANGLE : 0.946 5055 REMARK 3 CHIRALITY : 0.058 564 REMARK 3 PLANARITY : 0.008 646 REMARK 3 DIHEDRAL : 16.842 2287 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5Y9W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1300004901. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56086 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.847 REMARK 200 RESOLUTION RANGE LOW (A) : 35.383 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4MN8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MGCL2, 0.1 M BIS-TRIS PH 5.5, REMARK 280 25% PEG 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 48.34350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.25550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 48.34350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.25550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN B 243 REMARK 465 ASP B 244 REMARK 465 PRO B 245 REMARK 465 GLN B 246 REMARK 465 GLU B 247 REMARK 465 GLY B 248 REMARK 465 GLN B 249 REMARK 465 PRO B 250 REMARK 465 PRO B 251 REMARK 465 SER B 252 REMARK 465 LYS B 253 REMARK 465 PRO B 254 REMARK 465 SER B 255 REMARK 465 SER B 256 REMARK 465 SER B 257 REMARK 465 VAL B 258 REMARK 465 PRO B 259 REMARK 465 GLU B 260 REMARK 465 THR B 261 REMARK 465 SER B 262 REMARK 465 HIS B 263 REMARK 465 HIS B 264 REMARK 465 HIS B 265 REMARK 465 HIS B 266 REMARK 465 HIS B 267 REMARK 465 HIS B 268 REMARK 465 THR C -19 REMARK 465 LEU C -18 REMARK 465 ILE C -17 REMARK 465 ASN C -16 REMARK 465 GLY C -15 REMARK 465 SER C -14 REMARK 465 SER C -13 REMARK 465 ASP C -12 REMARK 465 GLU C -11 REMARK 465 GLU C -10 REMARK 465 ARG C -9 REMARK 465 THR C -8 REMARK 465 TYR C -7 REMARK 465 SER C -6 REMARK 465 PHE C -5 REMARK 465 SER C -4 REMARK 465 PRO C -3 REMARK 465 THR C -2 REMARK 465 THR C -1 REMARK 465 SER C 0 REMARK 465 PRO C 1 REMARK 465 PHE C 2 REMARK 465 ASP C 3 REMARK 465 PRO C 4 REMARK 465 ARG C 5 REMARK 465 SER C 6 REMARK 465 LEU C 7 REMARK 465 ASN C 8 REMARK 465 GLN C 9 REMARK 465 GLU C 10 REMARK 465 LEU C 11 REMARK 465 LYS C 12 REMARK 465 ILE C 13 REMARK 465 LYS C 51 REMARK 465 ILE A 240 REMARK 465 GLU A 241 REMARK 465 LEU A 242 REMARK 465 ASN A 243 REMARK 465 ASP A 244 REMARK 465 PRO A 245 REMARK 465 GLN A 246 REMARK 465 GLU A 247 REMARK 465 GLY A 248 REMARK 465 GLN A 249 REMARK 465 PRO A 250 REMARK 465 PRO A 251 REMARK 465 SER A 252 REMARK 465 LYS A 253 REMARK 465 PRO A 254 REMARK 465 SER A 255 REMARK 465 SER A 256 REMARK 465 SER A 257 REMARK 465 VAL A 258 REMARK 465 PRO A 259 REMARK 465 GLU A 260 REMARK 465 THR A 261 REMARK 465 SER A 262 REMARK 465 HIS A 263 REMARK 465 HIS A 264 REMARK 465 HIS A 265 REMARK 465 HIS A 266 REMARK 465 HIS A 267 REMARK 465 HIS A 268 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE C 50 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG2 VAL A 235 OE1 GLU A 238 1.88 REMARK 500 O HOH B 817 O HOH B 853 2.01 REMARK 500 O HOH B 1072 O HOH B 1073 2.10 REMARK 500 O HOH B 881 O HOH B 1036 2.11 REMARK 500 OD2 ASP B 137 OG SER B 162 2.14 REMARK 500 ND2 ASN B 128 O HOH B 801 2.15 REMARK 500 O HOH B 988 O HOH B 1012 2.15 REMARK 500 O HOH B 801 O HOH B 1041 2.15 REMARK 500 O HOH B 819 O HOH B 855 2.15 REMARK 500 O HOH B 966 O HOH B 1025 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR B 66 OE1 GLU B 241 3545 1.96 REMARK 500 O HOH B 983 O HOH A 866 3555 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 237 CA - CB - SG ANGL. DEV. = 7.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 106 -162.93 -128.50 REMARK 500 ASN B 128 62.20 63.81 REMARK 500 ASN B 129 -163.09 -129.02 REMARK 500 ASN B 154 -156.69 -129.44 REMARK 500 ASN B 202 -157.67 -135.61 REMARK 500 ASN A 129 -163.13 -126.90 REMARK 500 ASN A 154 -157.00 -131.98 REMARK 500 ASN A 178 -155.86 -124.93 REMARK 500 ASN A 202 -156.04 -124.09 REMARK 500 VAL A 233 -155.95 -88.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B1072 DISTANCE = 6.58 ANGSTROMS REMARK 525 HOH B1073 DISTANCE = 7.21 ANGSTROMS REMARK 525 HOH A 885 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A 886 DISTANCE = 6.68 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 701 DBREF 5Y9W B 27 262 UNP Q3E991 PRK6_ARATH 27 262 DBREF 5Y9W C -19 51 UNP Q4VP08 LUR12_ARATH 20 90 DBREF 5Y9W A 27 262 UNP Q3E991 PRK6_ARATH 27 262 SEQADV 5Y9W HIS B 263 UNP Q3E991 EXPRESSION TAG SEQADV 5Y9W HIS B 264 UNP Q3E991 EXPRESSION TAG SEQADV 5Y9W HIS B 265 UNP Q3E991 EXPRESSION TAG SEQADV 5Y9W HIS B 266 UNP Q3E991 EXPRESSION TAG SEQADV 5Y9W HIS B 267 UNP Q3E991 EXPRESSION TAG SEQADV 5Y9W HIS B 268 UNP Q3E991 EXPRESSION TAG SEQADV 5Y9W HIS A 263 UNP Q3E991 EXPRESSION TAG SEQADV 5Y9W HIS A 264 UNP Q3E991 EXPRESSION TAG SEQADV 5Y9W HIS A 265 UNP Q3E991 EXPRESSION TAG SEQADV 5Y9W HIS A 266 UNP Q3E991 EXPRESSION TAG SEQADV 5Y9W HIS A 267 UNP Q3E991 EXPRESSION TAG SEQADV 5Y9W HIS A 268 UNP Q3E991 EXPRESSION TAG SEQRES 1 B 242 TYR VAL SER GLU SER GLU PRO LEU VAL ARG PHE LYS ASN SEQRES 2 B 242 SER VAL LYS ILE THR LYS GLY ASP LEU ASN SER TRP ARG SEQRES 3 B 242 GLU GLY THR ASP PRO CYS SER GLY LYS TRP PHE GLY ILE SEQRES 4 B 242 TYR CYS GLN LYS GLY LEU THR VAL SER GLY ILE HIS VAL SEQRES 5 B 242 THR ARG LEU GLY LEU SER GLY THR ILE THR VAL ASP ASP SEQRES 6 B 242 LEU LYS ASP LEU PRO ASN LEU LYS THR ILE ARG LEU ASP SEQRES 7 B 242 ASN ASN LEU LEU SER GLY PRO LEU PRO HIS PHE PHE LYS SEQRES 8 B 242 LEU ARG GLY LEU LYS SER LEU MET LEU SER ASN ASN SER SEQRES 9 B 242 PHE SER GLY GLU ILE ARG ASP ASP PHE PHE LYS ASP MET SEQRES 10 B 242 SER LYS LEU LYS ARG LEU PHE LEU ASP HIS ASN LYS PHE SEQRES 11 B 242 GLU GLY SER ILE PRO SER SER ILE THR GLN LEU PRO GLN SEQRES 12 B 242 LEU GLU GLU LEU HIS MET GLN SER ASN ASN LEU THR GLY SEQRES 13 B 242 GLU ILE PRO PRO GLU PHE GLY SER MET LYS ASN LEU LYS SEQRES 14 B 242 VAL LEU ASP LEU SER THR ASN SER LEU ASP GLY ILE VAL SEQRES 15 B 242 PRO GLN SER ILE ALA ASP LYS LYS ASN LEU ALA VAL ASN SEQRES 16 B 242 LEU THR GLU ASN GLU TYR LEU CYS GLY PRO VAL VAL ASP SEQRES 17 B 242 VAL GLY CYS GLU ASN ILE GLU LEU ASN ASP PRO GLN GLU SEQRES 18 B 242 GLY GLN PRO PRO SER LYS PRO SER SER SER VAL PRO GLU SEQRES 19 B 242 THR SER HIS HIS HIS HIS HIS HIS SEQRES 1 C 71 THR LEU ILE ASN GLY SER SER ASP GLU GLU ARG THR TYR SEQRES 2 C 71 SER PHE SER PRO THR THR SER PRO PHE ASP PRO ARG SER SEQRES 3 C 71 LEU ASN GLN GLU LEU LYS ILE GLY ARG ILE GLY TYR CYS SEQRES 4 C 71 PHE ASP CYS ALA ARG ALA CYS MET ARG ARG GLY LYS TYR SEQRES 5 C 71 ILE ARG THR CYS SER PHE GLU ARG LYS LEU CYS ARG CYS SEQRES 6 C 71 SER ILE SER ASP ILE LYS SEQRES 1 A 242 TYR VAL SER GLU SER GLU PRO LEU VAL ARG PHE LYS ASN SEQRES 2 A 242 SER VAL LYS ILE THR LYS GLY ASP LEU ASN SER TRP ARG SEQRES 3 A 242 GLU GLY THR ASP PRO CYS SER GLY LYS TRP PHE GLY ILE SEQRES 4 A 242 TYR CYS GLN LYS GLY LEU THR VAL SER GLY ILE HIS VAL SEQRES 5 A 242 THR ARG LEU GLY LEU SER GLY THR ILE THR VAL ASP ASP SEQRES 6 A 242 LEU LYS ASP LEU PRO ASN LEU LYS THR ILE ARG LEU ASP SEQRES 7 A 242 ASN ASN LEU LEU SER GLY PRO LEU PRO HIS PHE PHE LYS SEQRES 8 A 242 LEU ARG GLY LEU LYS SER LEU MET LEU SER ASN ASN SER SEQRES 9 A 242 PHE SER GLY GLU ILE ARG ASP ASP PHE PHE LYS ASP MET SEQRES 10 A 242 SER LYS LEU LYS ARG LEU PHE LEU ASP HIS ASN LYS PHE SEQRES 11 A 242 GLU GLY SER ILE PRO SER SER ILE THR GLN LEU PRO GLN SEQRES 12 A 242 LEU GLU GLU LEU HIS MET GLN SER ASN ASN LEU THR GLY SEQRES 13 A 242 GLU ILE PRO PRO GLU PHE GLY SER MET LYS ASN LEU LYS SEQRES 14 A 242 VAL LEU ASP LEU SER THR ASN SER LEU ASP GLY ILE VAL SEQRES 15 A 242 PRO GLN SER ILE ALA ASP LYS LYS ASN LEU ALA VAL ASN SEQRES 16 A 242 LEU THR GLU ASN GLU TYR LEU CYS GLY PRO VAL VAL ASP SEQRES 17 A 242 VAL GLY CYS GLU ASN ILE GLU LEU ASN ASP PRO GLN GLU SEQRES 18 A 242 GLY GLN PRO PRO SER LYS PRO SER SER SER VAL PRO GLU SEQRES 19 A 242 THR SER HIS HIS HIS HIS HIS HIS HET SO4 B 701 5 HET SO4 B 702 5 HET SO4 B 703 5 HET SO4 B 704 5 HET SO4 B 705 5 HET SO4 C 101 5 HET SO4 A 701 5 HETNAM SO4 SULFATE ION FORMUL 4 SO4 7(O4 S 2-) FORMUL 11 HOH *382(H2 O) HELIX 1 AA1 TYR B 27 SER B 29 5 3 HELIX 2 AA2 GLU B 30 VAL B 41 1 12 HELIX 3 AA3 ASP B 56 GLY B 60 5 5 HELIX 4 AA4 LYS B 69 LEU B 71 5 3 HELIX 5 AA5 ASP B 91 LEU B 95 5 5 HELIX 6 AA6 HIS B 114 LEU B 118 5 5 HELIX 7 AA7 PRO B 161 LEU B 167 5 7 HELIX 8 AA8 PRO B 185 MET B 191 5 7 HELIX 9 AA9 PRO B 209 ASP B 214 1 6 HELIX 10 AB1 ARG C 15 ARG C 29 1 15 HELIX 11 AB2 TYR A 27 SER A 29 5 3 HELIX 12 AB3 GLU A 30 VAL A 41 1 12 HELIX 13 AB4 ASP A 91 LEU A 95 5 5 HELIX 14 AB5 HIS A 114 LEU A 118 5 5 HELIX 15 AB6 PRO A 161 LEU A 167 5 7 HELIX 16 AB7 PRO A 185 MET A 191 5 7 HELIX 17 AB8 PRO A 209 ASP A 214 1 6 HELIX 18 AB9 ASN A 225 CYS A 229 5 5 SHEET 1 AA1 8 ILE B 65 GLN B 68 0 SHEET 2 AA1 8 THR B 72 HIS B 77 -1 O SER B 74 N TYR B 66 SHEET 3 AA1 8 THR B 100 ARG B 102 1 O ARG B 102 N ILE B 76 SHEET 4 AA1 8 SER B 123 MET B 125 1 O MET B 125 N ILE B 101 SHEET 5 AA1 8 ARG B 148 PHE B 150 1 O PHE B 150 N LEU B 124 SHEET 6 AA1 8 GLU B 172 HIS B 174 1 O HIS B 174 N LEU B 149 SHEET 7 AA1 8 VAL B 196 ASP B 198 1 O ASP B 198 N LEU B 173 SHEET 8 AA1 8 ALA B 219 ASN B 221 1 O ALA B 219 N LEU B 197 SHEET 1 AA2 7 SER B 84 GLY B 85 0 SHEET 2 AA2 7 LEU B 107 GLY B 110 1 O SER B 109 N GLY B 85 SHEET 3 AA2 7 SER B 130 GLY B 133 1 O SER B 130 N LEU B 108 SHEET 4 AA2 7 LYS B 155 GLY B 158 1 O LYS B 155 N PHE B 131 SHEET 5 AA2 7 ASN B 179 GLU B 183 1 O ASN B 179 N PHE B 156 SHEET 6 AA2 7 SER B 203 ILE B 207 1 O SER B 203 N LEU B 180 SHEET 7 AA2 7 LEU B 228 CYS B 229 1 O CYS B 229 N GLY B 206 SHEET 1 AA3 2 ILE C 33 SER C 37 0 SHEET 2 AA3 2 LEU C 42 CYS C 45 -1 O LEU C 42 N SER C 37 SHEET 1 AA4 5 LYS A 42 ILE A 43 0 SHEET 2 AA4 5 LEU A 83 GLY A 85 -1 O SER A 84 N LYS A 42 SHEET 3 AA4 5 LEU A 107 GLY A 110 1 O LEU A 107 N LEU A 83 SHEET 4 AA4 5 SER A 130 GLU A 134 1 O SER A 130 N LEU A 108 SHEET 5 AA4 5 LYS A 155 GLU A 157 1 O LYS A 155 N PHE A 131 SHEET 1 AA5 8 ILE A 65 GLN A 68 0 SHEET 2 AA5 8 THR A 72 HIS A 77 -1 O THR A 72 N GLN A 68 SHEET 3 AA5 8 THR A 100 ARG A 102 1 O ARG A 102 N ILE A 76 SHEET 4 AA5 8 SER A 123 MET A 125 1 O MET A 125 N ILE A 101 SHEET 5 AA5 8 ARG A 148 PHE A 150 1 O PHE A 150 N LEU A 124 SHEET 6 AA5 8 GLU A 172 HIS A 174 1 O HIS A 174 N LEU A 149 SHEET 7 AA5 8 VAL A 196 ASP A 198 1 O ASP A 198 N LEU A 173 SHEET 8 AA5 8 ALA A 219 ASN A 221 1 O ALA A 219 N LEU A 197 SSBOND 1 CYS B 58 CYS B 67 1555 1555 2.06 SSBOND 2 CYS B 229 CYS B 237 1555 1555 2.05 SSBOND 3 CYS C 19 CYS C 36 1555 1555 2.04 SSBOND 4 CYS C 22 CYS C 43 1555 1555 2.04 SSBOND 5 CYS C 26 CYS C 45 1555 1555 2.04 SSBOND 6 CYS A 58 CYS A 67 1555 1555 2.06 SITE 1 AC1 10 PHE A 63 THR B 88 VAL B 89 ASP B 90 SITE 2 AC1 10 HIS B 114 LYS B 117 HOH B 816 HOH B 864 SITE 3 AC1 10 HOH B 961 HOH B 971 SITE 1 AC2 2 PRO B 111 HIS B 114 SITE 1 AC3 4 THR B 79 ARG B 80 ARG B 102 ASN B 105 SITE 1 AC4 2 LYS B 147 SO4 B 705 SITE 1 AC5 4 LYS B 122 LYS B 147 ARG B 148 SO4 B 704 SITE 1 AC6 5 ARG C 15 SER C 37 PHE C 38 GLU C 39 SITE 2 AC6 5 HOH C 202 SITE 1 AC7 5 THR A 88 VAL A 89 ASP A 90 HIS A 114 SITE 2 AC7 5 LYS A 117 CRYST1 96.687 48.511 146.310 90.00 102.67 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010343 0.000000 0.002325 0.00000 SCALE2 0.000000 0.020614 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007005 0.00000